TCONS_00068326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068326
Unique NameTCONS_00068326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068326 ID=TCONS_00068326|Name=TCONS_00068326|organism=Clytia hemisphaerica|type=transcript|length=550bp
TATAGAAAAGCAGAAAACAATAATTACCGAAAAAACTCAAAAGAGAAGCG
TAAAAATGGATAGTTCAAAAGAGATTTCGAATGAAAATCGGTATATTGAT
CTTGGATTGCCAGCGGATAAACAACCAATGTCTTTGTTGGACTACAAAGC
AGGCAAGAGATGGGGTTGGGTGAAGCAATGTACAATGTTTGAAGTTGATT
ATGATATAGATATCAAGGAAGGAGAACGAGATATTGGGGATCAACCGGAA
AACTGTCCCAAAAGTGCATCAAGCTGGATGGAAGAGTATGCAGCAATTGC
TGAAAAGAAGGAATCCAACAAAGGAACATCGTTTGGTGCTAATCCAAAGA
AAAGTGTTttcgaaaaagagaaaaaggagCCAATTGTAGGCGATAAAACT
GTCGCTTTGGGAACAAAAGATGAAGTTTATGCGACTGGTGATGCAGGGTT
GCTTGGAGCTGTTTTGGAAGCATATAATCATCAttggaatctcaaaattt
ctCCTGATGATTTTTGGATCCCTGTTGCAATTCGTGTTGGTAGGAAAATC
Run BLAST on NCBI

protein sequence of TCONS_00068326-protein

>TCONS_00068326-protein ID=TCONS_00068326-protein|Name=TCONS_00068326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
IEKQKTIITEKTQKRSVKMDSSKEISNENRYIDLGLPADKQPMSLLDYKA
GKRWGWVKQCTMFEVDYDIDIKEGERDIGDQPENCPKSASSWMEEYAAIA
EKKESNKGTSFGANPKKSVFEKEKKEPIVGDKTVALGTKDEVYATGDAGL
LGAVLEAYNHHWNLKISPDDFWIPVAIRVGRKI
Run BLAST on NCBI

transcript from alignment at scaffold_482:185761..186310

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068326 ID=TCONS_00068326|Name=TCONS_00068326|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at scaffold_482:185761..186310 (Clytia hemisphaerica)
GATTTTCCTACCAACACGAATTGCAACAGGGATCCAAAAATCATCAGGag
aaattttgagattccaaTGATGATTATATGCTTCCAAAACAGCTCCAAGC
AACCCTGCATCACCAGTCGCATAAACTTCATCTTTTGTTCCCAAAGCGAC
AGTTTTATCGCCTACAATTGGctcctttttctctttttcgaaAACACTTT
TCTTTGGATTAGCACCAAACGATGTTCCTTTGTTGGATTCCTTCTTTTCA
GCAATTGCTGCATACTCTTCCATCCAGCTTGATGCACTTTTGGGACAGTT
TTCCGGTTGATCCCCAATATCTCGTTCTCCTTCCTTGATATCTATATCAT
AATCAACTTCAAACATTGTACATTGCTTCACCCAACCCCATCTCTTGCCT
GCTTTGTAGTCCAACAAAGACATTGGTTGTTTATCCGCTGGCAATCCAAG
ATCAATATACCGATTTTCATTCGAAATCTCTTTTGAACTATCCATTTTTA
CGCTTCTCTTTTGAGTTTTTTCGGTAATTATTGTTTTCTGCTTTTCTATA

Coding sequence (CDS) from alignment at scaffold_482:185761..186310

>TCONS_00068326 ID=TCONS_00068326|Name=TCONS_00068326|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_482:185761..186310 (Clytia hemisphaerica)
GATTTTCCTACCAACACGAATTGCAACAGGGATCCAAAAATCATCAGGag
aaattttgagattccaaTGATGATTATATGCTTCCAAAACAGCTCCAAGC
AACCCTGCATCACCAGTCGCATAAACTTCATCTTTTGTTCCCAAAGCGAC
AGTTTTATCGCCTACAATTGGctcctttttctctttttcgaaAACACTTT
TCTTTGGATTAGCACCAAACGATGTTCCTTTGTTGGATTCCTTCTTTTCA
GCAATTGCTGCATACTCTTCCATCCAGCTTGATGCACTTTTGGGACAGTT
TTCCGGTTGATCCCCAATATCTCGTTCTCCTTCCTTGATATCTATATCAT
AATCAACTTCAAACATTGTACATTGCTTCACCCAACCCCATCTCTTGCCT
GCTTTGTAGTCCAACAAAGACATTGGTTGTTTATCCGCTGGCAATCCAAG
ATCAATATACCGATTTTCATTCGAAATCTCTTTTGAACTATCCATTTTTA
CGCTTCTCTTTTGAGTTTTTTCGGTAATTATTGTTTTCTGCTTTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042641XLOC_042641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068326-exon-scaffold_482-1491911889:185761..186310TCONS_00068326-exon-scaffold_482-1491911889:185761..186310Clytia hemisphaericaexon
TCONS_00068326-exon-scaffold_482-1510915933:185761..186310TCONS_00068326-exon-scaffold_482-1510915933:185761..186310Clytia hemisphaericaexon
TCONS_00068326-exon-scaffold_482-1575043694:185761..186310TCONS_00068326-exon-scaffold_482-1575043694:185761..186310Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068326-proteinTCONS_00068326-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:185761..186310 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47769	1.73129	1.22207	1.57082	2.79401	3.95555	15.8627	20.7753	16.3414	30.6008	28.5284	10.86	34.0688	27.5236	32.3445	30.1964	8.31886	16.9844	22.5645	43.7252	3.32786	1.3568	2.41931	3.22462	7.39423	8.12645	80.3816	95.9402	14.7422	7.46494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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