|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068324 ID=TCONS_00068324|Name=TCONS_00068324|organism=Clytia hemisphaerica|type=transcript|length=1263bp
CTGTTTTCTTatcaaaatctgtaaaactcACCCTATAGGCTATTCTTAGG
GCATTCTTACGATTTGTCCAATtgtcaccctgatattcttatagaagata
atCCAAATACCACATTTAAGAAACTTCCTGTTCCGTGGTTCTTTTCACAG
TCAAAAAAATTGTATTGTCTAATGGGAAATATTGCTGTCTGTCCCATTAC
TGATTACCATTCGCAAAGCTAACTCTTGTATTGAAGGGAGAAGTTAAGAA
TTGTTTGATCCTTTTAGCATAAATGTTGGCTGATGGGTTTATCATGACAA
AGGTTATCGCATTGACCGATCCGAAGAGTGTTGGGAGCAGACCAATCACA
TTTTGGAGTATCAAATGCTGATTCTCGGTCAACTGGGTCCGATTAAGGAC
AATTTGATAAATGACAGTGAATCCGATTACAATGATGAAGAGATAGAGAT
AAACCAAGGTCACCTTTAAAGCTGCTTTGGTAGCATCCGATAAACTTTGG
TTCATGCGTCGGTAATATCTTAACTTAACAATGGAAAGGATGTAGAAAAC
GATGACCAGAATGGTTACAATGACGTTTGCCGGCGTGGTATATTTCCCGG
CGTATCCGATATAATTGTTGAAGTTGAGATGAGCACCAACACCAGCTTGA
ATGAACACCATTACCAGGTATGACACCATCAGAATGAAGAACCGAGACGT
GGTGAATTTGTTGCTGTACTCTTCTAGATAAAAGACACGAAGGAAACGAT
CGAATCCAGTCAACGCGAAGAGATAATTTGTACAATAGATGGATACCAAA
TATAAGAAATATGTCCATCCAAGAACATTGCATTCCACTTCTTTGCCAAT
GTAAACCAGGGCTAATCTAATAAAAGTAGCTATACTACTAAATAAATCAG
CAAATGACAAAAACATCAATAACTTGATGGATTGATTTTGAACCTGATTG
GTGACTTTGATGACAAAGATGACAAAAATGTTACAAATGGCGCCCGATAC
ACCACACACGATGTACAAAGCCACAAAGATTCCTTTGATGGTTTCATCTt
caattgaaatgttttttcgtTCTTGCTGACAGAATTTAGATTCCATCTCT
GCACCGCTGTCGATGACTTTTGCTGTTTTACTAAAGAGGGGAAAAGCTAA
ATCCCTTTTTATATCGTTATGTTCAAAATTCACCTGCGTCAGTATATgca
ggtataaagaaaaacaaaaagaggtaTCTATTATATAAAAGGAGTGTAAA
GAGATGAAACAAC Run BLAST on NCBI protein sequence of TCONS_00068324-protein >TCONS_00068324-protein ID=TCONS_00068324-protein|Name=TCONS_00068324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
CFISLHSFYIIDTSFCFSLYLHILTQVNFEHNDIKRDLAFPLFSKTAKVI
DSGAEMESKFCQQERKNISIEDETIKGIFVALYIVCGVSGAICNIFVIFV
IKVTNQVQNQSIKLLMFLSFADLFSSIATFIRLALVYIGKEVECNVLGWT
YFLYLVSIYCTNYLFALTGFDRFLRVFYLEEYSNKFTTSRFFILMVSYLV
MVFIQAGVGAHLNFNNYIGYAGKYTTPANVIVTILVIVFYILSIVKLRYY
RRMNQSLSDATKAALKVTLVYLYLFIIVIGFTVIYQIVLNRTQLTENQHL
ILQNVIGLLPTLFGSVNAITFVMINPSANIYAKRIKQFLTSPFNTRVSFA
NGNQ Run BLAST on NCBI transcript from alignment at scaffold_482:132118..133380 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068324 ID=TCONS_00068324|Name=TCONS_00068324|organism=Clytia hemisphaerica|type=transcript|length=1263bp|location=Sequence derived from alignment at scaffold_482:132118..133380 (Clytia hemisphaerica)
GTTGTTTCATCTCTTTACACTCCTTTTATATAATAGAtacctctttttgt
ttttctttatacctgcATATACTGACGCAGGTGAATTTTGAACATAACGA
TATAAAAAGGGATTTAGCTTTTCCCCTCTTTAGTAAAACAGCAAAAGTCA
TCGACAGCGGTGCAGAGATGGAATCTAAATTCTGTCAGCAAGAacgaaaa
aacatttcaattgaAGATGAAACCATCAAAGGAATCTTTGTGGCTTTGTA
CATCGTGTGTGGTGTATCGGGCGCCATTTGTAACATTTTTGTCATCTTTG
TCATCAAAGTCACCAATCAGGTTCAAAATCAATCCATCAAGTTATTGATG
TTTTTGTCATTTGCTGATTTATTTAGTAGTATAGCTACTTTTATTAGATT
AGCCCTGGTTTACATTGGCAAAGAAGTGGAATGCAATGTTCTTGGATGGA
CATATTTCTTATATTTGGTATCCATCTATTGTACAAATTATCTCTTCGCG
TTGACTGGATTCGATCGTTTCCTTCGTGTCTTTTATCTAGAAGAGTACAG
CAACAAATTCACCACGTCTCGGTTCTTCATTCTGATGGTGTCATACCTGG
TAATGGTGTTCATTCAAGCTGGTGTTGGTGCTCATCTCAACTTCAACAAT
TATATCGGATACGCCGGGAAATATACCACGCCGGCAAACGTCATTGTAAC
CATTCTGGTCATCGTTTTCTACATCCTTTCCATTGTTAAGTTAAGATATT
ACCGACGCATGAACCAAAGTTTATCGGATGCTACCAAAGCAGCTTTAAAG
GTGACCTTGGTTTATCTCTATCTCTTCATCATTGTAATCGGATTCACTGT
CATTTATCAAATTGTCCTTAATCGGACCCAGTTGACCGAGAATCAGCATT
TGATACTCCAAAATGTGATTGGTCTGCTCCCAACACTCTTCGGATCGGTC
AATGCGATAACCTTTGTCATGATAAACCCATCAGCCAACATTTATGCTAA
AAGGATCAAACAATTCTTAACTTCTCCCTTCAATACAAGAGTTAGCTTTG
CGAATGGTAATCAGTAATGGGACAGACAGCAATATTTCCCATTAGACAAT
ACAATTTTTTTGACTGTGAAAAGAACCACGGAACAGGAAGTTTCTTAAAT
GTGGTATTTGGattatcttctataagaatatcagggtgacaATTGGACAA
ATCGTAAGAATGCCCTAAGAATAGCCTATAGGGTgagttttacagatttt
gatAAGAAAACAG Coding sequence (CDS) from alignment at scaffold_482:132118..133380 >TCONS_00068324 ID=TCONS_00068324|Name=TCONS_00068324|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_482:132118..133380 (Clytia hemisphaerica)
TGTTTCATCTCTTTACACTCCTTTTATATAATAGAtacctctttttgttt
ttctttatacctgcATATACTGACGCAGGTGAATTTTGAACATAACGATA
TAAAAAGGGATTTAGCTTTTCCCCTCTTTAGTAAAACAGCAAAAGTCATC
GACAGCGGTGCAGAGATGGAATCTAAATTCTGTCAGCAAGAacgaaaaaa
catttcaattgaAGATGAAACCATCAAAGGAATCTTTGTGGCTTTGTACA
TCGTGTGTGGTGTATCGGGCGCCATTTGTAACATTTTTGTCATCTTTGTC
ATCAAAGTCACCAATCAGGTTCAAAATCAATCCATCAAGTTATTGATGTT
TTTGTCATTTGCTGATTTATTTAGTAGTATAGCTACTTTTATTAGATTAG
CCCTGGTTTACATTGGCAAAGAAGTGGAATGCAATGTTCTTGGATGGACA
TATTTCTTATATTTGGTATCCATCTATTGTACAAATTATCTCTTCGCGTT
GACTGGATTCGATCGTTTCCTTCGTGTCTTTTATCTAGAAGAGTACAGCA
ACAAATTCACCACGTCTCGGTTCTTCATTCTGATGGTGTCATACCTGGTA
ATGGTGTTCATTCAAGCTGGTGTTGGTGCTCATCTCAACTTCAACAATTA
TATCGGATACGCCGGGAAATATACCACGCCGGCAAACGTCATTGTAACCA
TTCTGGTCATCGTTTTCTACATCCTTTCCATTGTTAAGTTAAGATATTAC
CGACGCATGAACCAAAGTTTATCGGATGCTACCAAAGCAGCTTTAAAGGT
GACCTTGGTTTATCTCTATCTCTTCATCATTGTAATCGGATTCACTGTCA
TTTATCAAATTGTCCTTAATCGGACCCAGTTGACCGAGAATCAGCATTTG
ATACTCCAAAATGTGATTGGTCTGCTCCCAACACTCTTCGGATCGGTCAA
TGCGATAACCTTTGTCATGATAAACCCATCAGCCAACATTTATGCTAAAA
GGATCAAACAATTCTTAACTTCTCCCTTCAATACAAGAGTTAGCTTTGCG
AATGGTAATCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068324-exon-scaffold_482-1491911889:132118..133380 | TCONS_00068324-exon-scaffold_482-1491911889:132118..133380 | Clytia hemisphaerica | exon |
| TCONS_00068324-exon-scaffold_482-1510915933:132118..133380 | TCONS_00068324-exon-scaffold_482-1510915933:132118..133380 | Clytia hemisphaerica | exon |
| TCONS_00068324-exon-scaffold_482-1575043694:132118..133380 | TCONS_00068324-exon-scaffold_482-1575043694:132118..133380 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:132118..133380 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
