TCONS_00068323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068323
Unique NameTCONS_00068323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068323 ID=TCONS_00068323|Name=TCONS_00068323|organism=Clytia hemisphaerica|type=transcript|length=492bp
GTGGTATGCGTTTTCAGGTTGTATGCGTTTTCAGGTTGTATGCGTTTTCA
AGTTGTATACGTTTTCGGGTTACATACGTTTTCAAGTTGTATACGTTTTC
AGGTTGTATGCGTTTTCAGGTTGTATGCGTTTTCAGGTTACAAACGTTTT
CAAGTTGTATACGTTTTCAGATTATATACGTTTTCAAGTTGTATACGTTT
TCGGGTTACATACGTTTTCAAGTTGTATACGTTTTTAGGTGGTATGCGTT
TTCAGGTTGTATACGTTTTCAGATTATATACGTTTTCAAGTTGTATACGT
TTTCGGGTTACATACGTTTTCAAGTTGTATACGTTTTTAGGTGGTATGCG
TTTTCAGGTTGTATGCGTTTTCAGGTTACAAACGTTTTCAAGTTGTATAC
GTTTTCGGGTTACATACGTTTTCAAGTTGTATACGTTTTTAGGTGGTATG
CGTTTTCAGGTTGTATGCGTTTTCAGGTTGTATGCGTTTTCA
Run BLAST on NCBI

protein sequence of TCONS_00068323-protein

>TCONS_00068323-protein ID=TCONS_00068323-protein|Name=TCONS_00068323-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
VVCVFRLYAFSGCMRFQVVYVFGLHTFSSCIRFQVVCVFRLYAFSGYKRF
QVVYVFRLYTFSSCIRFRVTYVFKLYTFLGGMRFQVVYVFRLYTFSSCIR
FRVTYVFKLYTFLGGMRFQVVCVFRLQTFSSCIRFRVTYVFKLYTFLGGM
RFQVVCVFRLYAFS
Run BLAST on NCBI

transcript from alignment at scaffold_482:128894..129385

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068323 ID=TCONS_00068323|Name=TCONS_00068323|organism=Clytia hemisphaerica|type=transcript|length=492bp|location=Sequence derived from alignment at scaffold_482:128894..129385 (Clytia hemisphaerica)
TGAAAACGCATACAACCTGAAAACGCATACAACCTGAAAACGCATACCAC
CTAAAAACGTATACAACTTGAAAACGTATGTAACCCGAAAACGTATACAA
CTTGAAAACGTTTGTAACCTGAAAACGCATACAACCTGAAAACGCATACC
ACCTAAAAACGTATACAACTTGAAAACGTATGTAACCCGAAAACGTATAC
AACTTGAAAACGTATATAATCTGAAAACGTATACAACCTGAAAACGCATA
CCACCTAAAAACGTATACAACTTGAAAACGTATGTAACCCGAAAACGTAT
ACAACTTGAAAACGTATATAATCTGAAAACGTATACAACTTGAAAACGTT
TGTAACCTGAAAACGCATACAACCTGAAAACGCATACAACCTGAAAACGT
ATACAACTTGAAAACGTATGTAACCCGAAAACGTATACAACTTGAAAACG
CATACAACCTGAAAACGCATACAACCTGAAAACGCATACCAC

Coding sequence (CDS) from alignment at scaffold_482:128894..129385

>TCONS_00068323 ID=TCONS_00068323|Name=TCONS_00068323|organism=Clytia hemisphaerica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_482:128894..129385 (Clytia hemisphaerica)
TGAAAACGCATACAACCTGAAAACGCATACAACCTGAAAACGCATACCAC
CTAAAAACGTATACAACTTGAAAACGTATGTAACCCGAAAACGTATACAA
CTTGAAAACGTTTGTAACCTGAAAACGCATACAACCTGAAAACGCATACC
ACCTAAAAACGTATACAACTTGAAAACGTATGTAACCCGAAAACGTATAC
AACTTGAAAACGTATATAATCTGAAAACGTATACAACCTGAAAACGCATA
CCACCTAAAAACGTATACAACTTGAAAACGTATGTAACCCGAAAACGTAT
ACAACTTGAAAACGTATATAATCTGAAAACGTATACAACTTGAAAACGTT
TGTAACCTGAAAACGCATACAACCTGAAAACGCATACAACCTGAAAACGT
ATACAACTTGAAAACGTATGTAACCCGAAAACGTATACAACTTGAAAACG
CATACAACCTGAAAACGCATACAACCTGAAAACGCATACCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042638XLOC_042638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068323-exon-scaffold_482-1491911889:128894..129385TCONS_00068323-exon-scaffold_482-1491911889:128894..129385Clytia hemisphaericaexon
TCONS_00068323-exon-scaffold_482-1510915933:128894..129385TCONS_00068323-exon-scaffold_482-1510915933:128894..129385Clytia hemisphaericaexon
TCONS_00068323-exon-scaffold_482-1575043694:128894..129385TCONS_00068323-exon-scaffold_482-1575043694:128894..129385Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068323-proteinTCONS_00068323-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:128894..129385 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.527376	1.35653	0.425827	0.555474	0	0	0	0	0.105641	0	0	0	0.16675	0	0	0	0	0.0964593	0.133264	0	0.121208	0	0.464718	0.261359	0	0	0	0.183454	0.278286	0.141765
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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