TCONS_00068321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068321
Unique NameTCONS_00068321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068321 ID=TCONS_00068321|Name=TCONS_00068321|organism=Clytia hemisphaerica|type=transcript|length=1534bp
catgttcttacgatgttcttaatttttcgacgaatttcagcctcaatgtt
cttataaactgggttttaataaaaaaacgtgtagttctTTTAAGTTAGGT
CTTTATTTCTCGATACTTACAATCTCAGAtaaattatttacaaattaata
GCGAATTTTTAATTACATCAATCTTTTTAACGTATTAATCTTTTTAACAG
ACAGTCTCAACTTTCTAATGACCATCATCTTTCATCTTTGAGTGATTCTT
GAAATAATCGAAGAGGACGAGTCCAAAAAAGATGAACAGTTCAAAGACTG
AAAGAATGGAGAGACCATTCATGAGACCAACGCAACCACCAAAATTCGCA
AACAAATCCACCCATTTTTCTCTTGGTGTTTCTTCGTACACTTTCACCAA
AAAGTATTCGTATCCAAAAGCTAATGAAANCGGTGTTTCTTCGTAAACTT
TGACCAAAAAGTTTTCGTATCCAAAAGCTAATGAAAGAAGATTGTTCTGA
TTCTTTGTGGTGTGATGTTTTAAAGACATTTTGATGTCTTCTTCGTAGCA
TGGTTGTAGCCTACAAAAAGCGTTGCACTTATTGTATACCTCGTGGTCTT
CTTCCACTCTTTTTAAGCAAGTCTCTGCCTCAGTATCATTCAAATGAAGC
TTGTTCTCAAACTTGCGTGGTTCTCGCATGTGTTTCTTATACATGTGTGG
AATAGCTCCACATTTTTCGAACACTTTCTCCCAAAAACAACCTTTCTTGC
ATTTATTAACAGTATAGTTCcctttgaatttgttttgtgCATAAGTACCT
TGACCTTCAACGCAATCAGTATAAGGAAGACCCAGTCTGGTGATTATTCT
TTTGCGGATGTCGACACGATAGTCTCCTTCACTGGCCCAATAAATACGAG
ATGACGCTTCTTGAAAGCCTTCAGATGTTGGGTTGATGTAAAGCTCACTC
CACGTGTCAACAGATCGATCCGCAACAGCATTCAAGTTAAGACGTTTGGC
CGTTGATCTCTGCGTGTATCCACTTAATGTCAAACAGTTTGTTGTATTGT
CGAATTCAATGAATTGGTTTTGTAGAACATGATTTGAGTAATCTCCCTTA
GCACTGTAAGCTTTCATCAACGTTGTTCCGTTATAACCACACTTTGTTAA
GTTGAAGCTGCATGCAACCAAGTCAAAGCTGTCGTCTACCAGTATTGGAC
GCTTAAACGTTGGCTTACCACCACCGAAAGATCGTCTTTCTCTGTTGATA
CCATAATAACTACATATAGTGATGGCTGGATATTCCATCGTTTTTTCTCT
GACAACTTTCAATGTGATGATACTTTGGTCGTCTAAGTATTCCACCCAAT
GATGTCTGGAAATGTAGCCAGCAAGAATAACAGAAGTAACTACGAGGATA
GACCAAATGACCTTGCTTTTGATTCCACCAGTTGCAATTCGACTTGCTCC
ATGAATGGTAAGTCCTTCAGCATAACTCTGTTTCTcacttttgatacttt
ttattgctttcTCAATAATATTGATAGCTTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00068321-protein

>TCONS_00068321-protein ID=TCONS_00068321-protein|Name=TCONS_00068321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
VEAINIIEKAIKSIKSEKQSYAEGLTIHGASRIATGGIKSKVIWSILVVT
SVILAGYISRHHWVEYLDDQSIITLKVVREKTMEYPAITICSYYGINRER
RSFGGGKPTFKRPILVDDSFDLVACSFNLTKCGYNGTTLMKAYSAKGDYS
NHVLQNQFIEFDNTTNCLTLSGYTQRSTAKRLNLNAVADRSVDTWSELYI
NPTSEGFQEASSRIYWASEGDYRVDIRKRIITRLGLPYTDCVEGQGTYAQ
NKFKGNYTVNKCKKGCFWEKVFEKCGAIPHMYKKHMREPRKFENKLHLND
TEAETCLKRVEEDHEVYNKCNAFCRLQPCYEEDIKMSLKHHTTKNQNNLL
SLAFGYENFLVKVYEETPXSLAFGYEYFLVKVYEETPREKWVDLFANFGG
CVGLMNGLSILSVFELFIFFGLVLFDYFKNHSKMKDDGH
Run BLAST on NCBI

transcript from alignment at scaffold_482:73657..75190

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068321 ID=TCONS_00068321|Name=TCONS_00068321|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_482:73657..75190 (Clytia hemisphaerica)
GTTGAAGCTATCAATATTATTGAgaaagcaataaaaagtatcaaaagtgA GAAACAGAGTTATGCTGAAGGACTTACCATTCATGGAGCAAGTCGAATTG CAACTGGTGGAATCAAAAGCAAGGTCATTTGGTCTATCCTCGTAGTTACT TCTGTTATTCTTGCTGGCTACATTTCCAGACATCATTGGGTGGAATACTT AGACGACCAAAGTATCATCACATTGAAAGTTGTCAGAGAAAAAACGATGG AATATCCAGCCATCACTATATGTAGTTATTATGGTATCAACAGAGAAAGA CGATCTTTCGGTGGTGGTAAGCCAACGTTTAAGCGTCCAATACTGGTAGA CGACAGCTTTGACTTGGTTGCATGCAGCTTCAACTTAACAAAGTGTGGTT ATAACGGAACAACGTTGATGAAAGCTTACAGTGCTAAGGGAGATTACTCA AATCATGTTCTACAAAACCAATTCATTGAATTCGACAATACAACAAACTG TTTGACATTAAGTGGATACACGCAGAGATCAACGGCCAAACGTCTTAACT TGAATGCTGTTGCGGATCGATCTGTTGACACGTGGAGTGAGCTTTACATC AACCCAACATCTGAAGGCTTTCAAGAAGCGTCATCTCGTATTTATTGGGC CAGTGAAGGAGACTATCGTGTCGACATCCGCAAAAGAATAATCACCAGAC TGGGTCTTCCTTATACTGATTGCGTTGAAGGTCAAGGTACTTATGcacaa aacaaattcaaaggGAACTATACTGTTAATAAATGCAAGAAAGGTTGTTT TTGGGAGAAAGTGTTCGAAAAATGTGGAGCTATTCCACACATGTATAAGA AACACATGCGAGAACCACGCAAGTTTGAGAACAAGCTTCATTTGAATGAT ACTGAGGCAGAGACTTGCTTAAAAAGAGTGGAAGAAGACCACGAGGTATA CAATAAGTGCAACGCTTTTTGTAGGCTACAACCATGCTACGAAGAAGACA TCAAAATGTCTTTAAAACATCACACCACAAAGAATCAGAACAATCTTCTT TCATTAGCTTTTGGATACGAAAACTTTTTGGTCAAAGTTTACGAAGAAAC ACCGNTTTCATTAGCTTTTGGATACGAATACTTTTTGGTGAAAGTGTACG AAGAAACACCAAGAGAAAAATGGGTGGATTTGTTTGCGAATTTTGGTGGT TGCGTTGGTCTCATGAATGGTCTCTCCATTCTTTCAGTCTTTGAACTGTT CATCTTTTTTGGACTCGTCCTCTTCGATTATTTCAAGAATCACTCAAAGA TGAAAGATGATGGTCATTAGAAAGTTGAGACTGTCTGTTAAAAAGATTAA TACGTTAAAAAGATTGATGTAATTAAAAATTCGCtattaatttgtaaata atttaTCTGAGATTGTAAGTATCGAGAAATAAAGACCTAACTTAAAagaa ctacacgtttttttattaaaacccagtttataagaacattgaggctgaaa ttcgtcgaaaaattaagaacatcgtaagaacatg

Coding sequence (CDS) from alignment at scaffold_482:73657..75190

>TCONS_00068321 ID=TCONS_00068321|Name=TCONS_00068321|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_482:73657..75190 (Clytia hemisphaerica)
GTTGAAGCTATCAATATTATTGAgaaagcaataaaaagtatcaaaagtgA
GAAACAGAGTTATGCTGAAGGACTTACCATTCATGGAGCAAGTCGAATTG
CAACTGGTGGAATCAAAAGCAAGGTCATTTGGTCTATCCTCGTAGTTACT
TCTGTTATTCTTGCTGGCTACATTTCCAGACATCATTGGGTGGAATACTT
AGACGACCAAAGTATCATCACATTGAAAGTTGTCAGAGAAAAAACGATGG
AATATCCAGCCATCACTATATGTAGTTATTATGGTATCAACAGAGAAAGA
CGATCTTTCGGTGGTGGTAAGCCAACGTTTAAGCGTCCAATACTGGTAGA
CGACAGCTTTGACTTGGTTGCATGCAGCTTCAACTTAACAAAGTGTGGTT
ATAACGGAACAACGTTGATGAAAGCTTACAGTGCTAAGGGAGATTACTCA
AATCATGTTCTACAAAACCAATTCATTGAATTCGACAATACAACAAACTG
TTTGACATTAAGTGGATACACGCAGAGATCAACGGCCAAACGTCTTAACT
TGAATGCTGTTGCGGATCGATCTGTTGACACGTGGAGTGAGCTTTACATC
AACCCAACATCTGAAGGCTTTCAAGAAGCGTCATCTCGTATTTATTGGGC
CAGTGAAGGAGACTATCGTGTCGACATCCGCAAAAGAATAATCACCAGAC
TGGGTCTTCCTTATACTGATTGCGTTGAAGGTCAAGGTACTTATGcacaa
aacaaattcaaaggGAACTATACTGTTAATAAATGCAAGAAAGGTTGTTT
TTGGGAGAAAGTGTTCGAAAAATGTGGAGCTATTCCACACATGTATAAGA
AACACATGCGAGAACCACGCAAGTTTGAGAACAAGCTTCATTTGAATGAT
ACTGAGGCAGAGACTTGCTTAAAAAGAGTGGAAGAAGACCACGAGGTATA
CAATAAGTGCAACGCTTTTTGTAGGCTACAACCATGCTACGAAGAAGACA
TCAAAATGTCTTTAAAACATCACACCACAAAGAATCAGAACAATCTTCTT
TCATTAGCTTTTGGATACGAAAACTTTTTGGTCAAAGTTTACGAAGAAAC
ACCGNTTTCATTAGCTTTTGGATACGAATACTTTTTGGTGAAAGTGTACG
AAGAAACACCAAGAGAAAAATGGGTGGATTTGTTTGCGAATTTTGGTGGT
TGCGTTGGTCTCATGAATGGTCTCTCCATTCTTTCAGTCTTTGAACTGTT
CATCTTTTTTGGACTCGTCCTCTTCGATTATTTCAAGAATCACTCAAAGA
TGAAAGATGATGGTCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042636XLOC_042636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068321-exon-scaffold_482-1491911889:73657..75190TCONS_00068321-exon-scaffold_482-1491911889:73657..75190Clytia hemisphaericaexon
TCONS_00068321-exon-scaffold_482-1510915933:73657..75190TCONS_00068321-exon-scaffold_482-1510915933:73657..75190Clytia hemisphaericaexon
TCONS_00068321-exon-scaffold_482-1575043694:73657..75190TCONS_00068321-exon-scaffold_482-1575043694:73657..75190Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068321-proteinTCONS_00068321-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:73657..75190 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0273278 0 0.0618611 0 0 0 0 0.0646647 0.112851 0.0841419 0.162945 0.0536138 0.0179109 0 0 0 0.244962 0.165265 0.711942 0.358017 0.767919 0.867861 0.384275 0.869362 0.620196 1.47938 0.112022 0.119577 0.0298182 0.0911476
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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