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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068321 ID=TCONS_00068321|Name=TCONS_00068321|organism=Clytia hemisphaerica|type=transcript|length=1534bp catgttcttacgatgttcttaatttttcgacgaatttcagcctcaatgtt cttataaactgggttttaataaaaaaacgtgtagttctTTTAAGTTAGGT CTTTATTTCTCGATACTTACAATCTCAGAtaaattatttacaaattaata GCGAATTTTTAATTACATCAATCTTTTTAACGTATTAATCTTTTTAACAG ACAGTCTCAACTTTCTAATGACCATCATCTTTCATCTTTGAGTGATTCTT GAAATAATCGAAGAGGACGAGTCCAAAAAAGATGAACAGTTCAAAGACTG AAAGAATGGAGAGACCATTCATGAGACCAACGCAACCACCAAAATTCGCA AACAAATCCACCCATTTTTCTCTTGGTGTTTCTTCGTACACTTTCACCAA AAAGTATTCGTATCCAAAAGCTAATGAAANCGGTGTTTCTTCGTAAACTT TGACCAAAAAGTTTTCGTATCCAAAAGCTAATGAAAGAAGATTGTTCTGA TTCTTTGTGGTGTGATGTTTTAAAGACATTTTGATGTCTTCTTCGTAGCA TGGTTGTAGCCTACAAAAAGCGTTGCACTTATTGTATACCTCGTGGTCTT CTTCCACTCTTTTTAAGCAAGTCTCTGCCTCAGTATCATTCAAATGAAGC TTGTTCTCAAACTTGCGTGGTTCTCGCATGTGTTTCTTATACATGTGTGG AATAGCTCCACATTTTTCGAACACTTTCTCCCAAAAACAACCTTTCTTGC ATTTATTAACAGTATAGTTCcctttgaatttgttttgtgCATAAGTACCT TGACCTTCAACGCAATCAGTATAAGGAAGACCCAGTCTGGTGATTATTCT TTTGCGGATGTCGACACGATAGTCTCCTTCACTGGCCCAATAAATACGAG ATGACGCTTCTTGAAAGCCTTCAGATGTTGGGTTGATGTAAAGCTCACTC CACGTGTCAACAGATCGATCCGCAACAGCATTCAAGTTAAGACGTTTGGC CGTTGATCTCTGCGTGTATCCACTTAATGTCAAACAGTTTGTTGTATTGT CGAATTCAATGAATTGGTTTTGTAGAACATGATTTGAGTAATCTCCCTTA GCACTGTAAGCTTTCATCAACGTTGTTCCGTTATAACCACACTTTGTTAA GTTGAAGCTGCATGCAACCAAGTCAAAGCTGTCGTCTACCAGTATTGGAC GCTTAAACGTTGGCTTACCACCACCGAAAGATCGTCTTTCTCTGTTGATA CCATAATAACTACATATAGTGATGGCTGGATATTCCATCGTTTTTTCTCT GACAACTTTCAATGTGATGATACTTTGGTCGTCTAAGTATTCCACCCAAT GATGTCTGGAAATGTAGCCAGCAAGAATAACAGAAGTAACTACGAGGATA GACCAAATGACCTTGCTTTTGATTCCACCAGTTGCAATTCGACTTGCTCC ATGAATGGTAAGTCCTTCAGCATAACTCTGTTTCTcacttttgatacttt ttattgctttcTCAATAATATTGATAGCTTCAAC Run BLAST on NCBI protein sequence of TCONS_00068321-protein >TCONS_00068321-protein ID=TCONS_00068321-protein|Name=TCONS_00068321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
VEAINIIEKAIKSIKSEKQSYAEGLTIHGASRIATGGIKSKVIWSILVVT SVILAGYISRHHWVEYLDDQSIITLKVVREKTMEYPAITICSYYGINRER RSFGGGKPTFKRPILVDDSFDLVACSFNLTKCGYNGTTLMKAYSAKGDYS NHVLQNQFIEFDNTTNCLTLSGYTQRSTAKRLNLNAVADRSVDTWSELYI NPTSEGFQEASSRIYWASEGDYRVDIRKRIITRLGLPYTDCVEGQGTYAQ NKFKGNYTVNKCKKGCFWEKVFEKCGAIPHMYKKHMREPRKFENKLHLND TEAETCLKRVEEDHEVYNKCNAFCRLQPCYEEDIKMSLKHHTTKNQNNLL SLAFGYENFLVKVYEETPXSLAFGYEYFLVKVYEETPREKWVDLFANFGG CVGLMNGLSILSVFELFIFFGLVLFDYFKNHSKMKDDGH Run BLAST on NCBI transcript from alignment at scaffold_482:73657..75190 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068321 ID=TCONS_00068321|Name=TCONS_00068321|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_482:73657..75190 (Clytia hemisphaerica) GTTGAAGCTATCAATATTATTGAgaaagcaataaaaagtatcaaaagtgA
GAAACAGAGTTATGCTGAAGGACTTACCATTCATGGAGCAAGTCGAATTG
CAACTGGTGGAATCAAAAGCAAGGTCATTTGGTCTATCCTCGTAGTTACT
TCTGTTATTCTTGCTGGCTACATTTCCAGACATCATTGGGTGGAATACTT
AGACGACCAAAGTATCATCACATTGAAAGTTGTCAGAGAAAAAACGATGG
AATATCCAGCCATCACTATATGTAGTTATTATGGTATCAACAGAGAAAGA
CGATCTTTCGGTGGTGGTAAGCCAACGTTTAAGCGTCCAATACTGGTAGA
CGACAGCTTTGACTTGGTTGCATGCAGCTTCAACTTAACAAAGTGTGGTT
ATAACGGAACAACGTTGATGAAAGCTTACAGTGCTAAGGGAGATTACTCA
AATCATGTTCTACAAAACCAATTCATTGAATTCGACAATACAACAAACTG
TTTGACATTAAGTGGATACACGCAGAGATCAACGGCCAAACGTCTTAACT
TGAATGCTGTTGCGGATCGATCTGTTGACACGTGGAGTGAGCTTTACATC
AACCCAACATCTGAAGGCTTTCAAGAAGCGTCATCTCGTATTTATTGGGC
CAGTGAAGGAGACTATCGTGTCGACATCCGCAAAAGAATAATCACCAGAC
TGGGTCTTCCTTATACTGATTGCGTTGAAGGTCAAGGTACTTATGcacaa
aacaaattcaaaggGAACTATACTGTTAATAAATGCAAGAAAGGTTGTTT
TTGGGAGAAAGTGTTCGAAAAATGTGGAGCTATTCCACACATGTATAAGA
AACACATGCGAGAACCACGCAAGTTTGAGAACAAGCTTCATTTGAATGAT
ACTGAGGCAGAGACTTGCTTAAAAAGAGTGGAAGAAGACCACGAGGTATA
CAATAAGTGCAACGCTTTTTGTAGGCTACAACCATGCTACGAAGAAGACA
TCAAAATGTCTTTAAAACATCACACCACAAAGAATCAGAACAATCTTCTT
TCATTAGCTTTTGGATACGAAAACTTTTTGGTCAAAGTTTACGAAGAAAC
ACCGNTTTCATTAGCTTTTGGATACGAATACTTTTTGGTGAAAGTGTACG
AAGAAACACCAAGAGAAAAATGGGTGGATTTGTTTGCGAATTTTGGTGGT
TGCGTTGGTCTCATGAATGGTCTCTCCATTCTTTCAGTCTTTGAACTGTT
CATCTTTTTTGGACTCGTCCTCTTCGATTATTTCAAGAATCACTCAAAGA
TGAAAGATGATGGTCATTAGAAAGTTGAGACTGTCTGTTAAAAAGATTAA
TACGTTAAAAAGATTGATGTAATTAAAAATTCGCtattaatttgtaaata
atttaTCTGAGATTGTAAGTATCGAGAAATAAAGACCTAACTTAAAagaa
ctacacgtttttttattaaaacccagtttataagaacattgaggctgaaa
ttcgtcgaaaaattaagaacatcgtaagaacatg Coding sequence (CDS) from alignment at scaffold_482:73657..75190 >TCONS_00068321 ID=TCONS_00068321|Name=TCONS_00068321|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_482:73657..75190 (Clytia hemisphaerica) GTTGAAGCTATCAATATTATTGAgaaagcaataaaaagtatcaaaagtgA GAAACAGAGTTATGCTGAAGGACTTACCATTCATGGAGCAAGTCGAATTG CAACTGGTGGAATCAAAAGCAAGGTCATTTGGTCTATCCTCGTAGTTACT TCTGTTATTCTTGCTGGCTACATTTCCAGACATCATTGGGTGGAATACTT AGACGACCAAAGTATCATCACATTGAAAGTTGTCAGAGAAAAAACGATGG AATATCCAGCCATCACTATATGTAGTTATTATGGTATCAACAGAGAAAGA CGATCTTTCGGTGGTGGTAAGCCAACGTTTAAGCGTCCAATACTGGTAGA CGACAGCTTTGACTTGGTTGCATGCAGCTTCAACTTAACAAAGTGTGGTT ATAACGGAACAACGTTGATGAAAGCTTACAGTGCTAAGGGAGATTACTCA AATCATGTTCTACAAAACCAATTCATTGAATTCGACAATACAACAAACTG TTTGACATTAAGTGGATACACGCAGAGATCAACGGCCAAACGTCTTAACT TGAATGCTGTTGCGGATCGATCTGTTGACACGTGGAGTGAGCTTTACATC AACCCAACATCTGAAGGCTTTCAAGAAGCGTCATCTCGTATTTATTGGGC CAGTGAAGGAGACTATCGTGTCGACATCCGCAAAAGAATAATCACCAGAC TGGGTCTTCCTTATACTGATTGCGTTGAAGGTCAAGGTACTTATGcacaa aacaaattcaaaggGAACTATACTGTTAATAAATGCAAGAAAGGTTGTTT TTGGGAGAAAGTGTTCGAAAAATGTGGAGCTATTCCACACATGTATAAGA AACACATGCGAGAACCACGCAAGTTTGAGAACAAGCTTCATTTGAATGAT ACTGAGGCAGAGACTTGCTTAAAAAGAGTGGAAGAAGACCACGAGGTATA CAATAAGTGCAACGCTTTTTGTAGGCTACAACCATGCTACGAAGAAGACA TCAAAATGTCTTTAAAACATCACACCACAAAGAATCAGAACAATCTTCTT TCATTAGCTTTTGGATACGAAAACTTTTTGGTCAAAGTTTACGAAGAAAC ACCGNTTTCATTAGCTTTTGGATACGAATACTTTTTGGTGAAAGTGTACG AAGAAACACCAAGAGAAAAATGGGTGGATTTGTTTGCGAATTTTGGTGGT TGCGTTGGTCTCATGAATGGTCTCTCCATTCTTTCAGTCTTTGAACTGTT CATCTTTTTTGGACTCGTCCTCTTCGATTATTTCAAGAATCACTCAAAGA TGAAAGATGATGGTCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068321-exon-scaffold_482-1491911889:73657..75190 | TCONS_00068321-exon-scaffold_482-1491911889:73657..75190 | Clytia hemisphaerica | exon |
TCONS_00068321-exon-scaffold_482-1510915933:73657..75190 | TCONS_00068321-exon-scaffold_482-1510915933:73657..75190 | Clytia hemisphaerica | exon |
TCONS_00068321-exon-scaffold_482-1575043694:73657..75190 | TCONS_00068321-exon-scaffold_482-1575043694:73657..75190 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_482 | supercontig | scaffold_482:73657..75190 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR001873 | ENaC |
Vocabulary: Biological Process
Term | Definition |
GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
Vocabulary: Molecular Function
Term | Definition |
GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006814 |
sodium ion transport |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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