TCONS_00068309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068309
Unique NameTCONS_00068309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1150

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068309 ID=TCONS_00068309|Name=TCONS_00068309|organism=Clytia hemisphaerica|type=transcript|length=1150bp
GATGGAAATCGTGGAATCGAATGGGGAGCTGACTCCAGGAAATTCAAACG
TGTGCACTCAATCGCACTTTGAGTCCTACTTGACAACGATCACTCTGTCA
AGAACAGTTTATCAGCAATACCAAATCTCTTGTGGATGGTGGGGCTCGTC
GACCTGTTACAGAACAAGAACTCAACGTATCTCTTATTATCAACAAGTAA
CGAGGTACAGAGTTGTATACCAGGATATTTGTTGCCCTGGTTGGGCCCAG
CAAGGTGATAGCTGTCCAATTCCGGTGTGCAACCCTGTTTGTGTGAATGG
AGAATGTGCAGCACCTTCCACTTGTTCTTGTCAACCTGGCTTTGATGGAA
GTCAGTGTGAAAGTGATATTGACGAGTGTGCGTTAGGATCCGACGGATGC
CAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTAATCC
TGGATACTTTTTGTCTTCTGATAACACAACATGCGAAGATATTGACGAGT
GTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACCGAAGGG
TCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTCTGATAACAA
AACTTGTGAAGATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAAC
AAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTAATCCTGGA
TACCGATTTTCTTCTGATAACACAGCTTGTGAAGTTGATATATTGGCTAT
GATTGCACCATGGTCGAATTGGACAGATTGGGATAAGCCCTGCGGAGGAG
GTTTTCAGTTCAGAACATGAACTTGTGACCCTCCACCGCCGTTTCAAGCA
TTGTGTGCAGAACACGGGGGTGATGAAGAAAAACGTCTTTGTAACACAGA
TATCCTATGTCCAGaaatgtgtTCGAAAATGAAATCAATTGATTGTTCGA
GTGTTGTTGACATTTATGATATGGCCATCCTTAAAACGAACCACTCATAT
ATTGGAATGAACGAGACATCAGTCAATTCGTCTTTGGTTGCCATAGCAAC
ATGGAAtactcaaaaaattcaaagtcttTGTAAAGGTAttgttttttcta
catcaatatGATGGACGCTATAGAATAACTTATCTGTTATTATACATAAA
Run BLAST on NCBI

protein sequence of TCONS_00068309-protein

>TCONS_00068309-protein ID=TCONS_00068309-protein|Name=TCONS_00068309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MEIVESNGELTPGNSNVCTQSHFESYLTTITLSRTVYQQYQISCGWWGSS
TCYRTRTQRISYYQQVTRYRVVYQDICCPGWAQQGDSCPIPVCNPVCVNG
ECAAPSTCSCQPGFDGSQCESDIDECALGSDGCQQNCVNTEGSFNCTCNP
GYFLSSDNTTCEDIDECALGSDGCQQNCVNTEGSFNCTCNPGYFLSSDNK
TCEDIDECALGSDGCQQNCVNTEGSFNCTCNPGYRFSSDNTACEVDILAM
IAPWSNWTDWDKPCGGGFQFRT
Run BLAST on NCBI

transcript from alignment at scaffold_482:393956..402382-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068309 ID=TCONS_00068309|Name=TCONS_00068309|organism=Clytia hemisphaerica|type=transcript|length=8427bp|location=Sequence derived from alignment at scaffold_482:393956..402382- (Clytia hemisphaerica)
GATGGAAATCGTGGAATCGAATGGGGAGCTGACTCCAGGAAAGTTAGTCC
AGTTAATCTTTTTCAGCCATATTTTGAACATATTACTTGATGAAAATACT
CCTTCGGAAAAGATAATTAACCTAATAGTCTAGCAAGCTAGACGACTAAT
TCAGAAATAGTAGAAATAAAGCAAAAAGTAATTATCATATAACGCCTATA
CTACTGTATTACATGCATTATAAACGACTCCAGTCTATTAACCTAATAAA
CTGTGATTTATGTTATAGTTCAAACGTGTGCACTCAATCGCACTTTGAGT
CCTACTTGACAACGATCACTCTGTCAAGAACAGTTTATCAGCAATACCAA
ATCTCTTGTGGATGGTGGGGCTCGTCGACCTGTTACAGAACAAGGTACTG
ATAAACTCATTTACTTTGTCTCTCACTACTGTCAGCAGAATTTAAAATAC
AAGTTCTCAAATCGCACAGGAAAAGATATTTTACAAAAGTTTTCTGCTTT
TTAAATTTTAAACTTTAGCCTGCTTTAGCTTCTCTACTTTTTTTTAAAAT
AACAAATCAATGAAATGTAAAGCGAAAATATTAGTTTTCATATCGGGAGG
GGGGTGTTGATTGTTGGAGCACGACAGTACGTTCAACCCAAAATTAGGCC
TTTGAAAAGGGACCGTTCAAATTTTAGTAAATTTTGTCGAAAAATCGACC
CTTTGGTGCATTTTATGCAAAATGTGGTTAGATTTTCCAAATTTTACACC
CTTAGAGTGCAATTTCTCTCGTCTTTGCTCATTTCGACCCTTACAGTGCA
CTTTGGGAAGCTTGAAAAAAGGACCATTAAGTGCCGCACGCACAGTAGGT
TGTTCACCTTGAGTGCCCCCCCCCCCCGGTTTTTATCCCCTTATAAAGGT
AAATCAGCGAAAAAGTGAGCCTTACCTCTGTAAGGCTCACCTCTGTAACA
ATCTTCGTTCTAACCTCAGAGAGAGAGTTTTTTGACTTTTCATTGTTTTC
GTATCCTTAAAAGTAACAGCAAAATATCCGACCCTTAGATAGACTATTTT
GACTAATTGTTGTTTTTTGTAATCGTGTTAGAGACATTGGAAAAGTCAAA
AACCGACCCTTACCGTCCGCACATACCTAGCATTCATTTTTTCCTTCCCG
TTCCACTTGACTTGACTTGACTTCACTTTTTCAATGCCTTTTCAGAACTC
AACGTATCTCTTATTATCAACAAGTAACGAGGTACAGAGTTGTATACCAG
GATATTTGTTGCCCTGGTTGGGCCCAGCAAGGTGATAGCTGTCCAATTCG
TAAGTAACCAGCATCTTGATATATCTTGATCAGATGAGATTAAAGTCATT
TATACTGAAACTTTTTTTAGTATGTAATACTTGGCTCAGTGTAATTTAGA
AGACTCCATTTTTGGTTCTGCTTGATGTGGTAGCTAATTCATACCACTAG
ATCCAGTCCCTTTTTGCGTAAAATGAATAGAAAACTACTAGACGGTTCCC
GTCGTCGCAAACGCCGGTTAACGGTTTTGCTTGCACATCAAAAGCCTTTA
AAATACTATAATGTGGGTTAATGCCTGACATCGTTTTGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTAATAGGGGTTCAGTTCTTACATCTACGCACACTTCTC
TTAGCAATTTGGACGTAATGTCTCTAATTTCATTGTGTCTCAAAGACACG
AATCCTCCCTTCTTGTCCGATCTTTTAATCCGAGTTTTCTACGCTTGTCA
AACTTAGCGCGAGACTTTTTGTATCAAAGGTGGATAGGTTTTCCAGCCGC
GGCGTTCAAATTTTAGAAACCTTAACATATGTTACTGGGCTAGCGTTACA
GACATTTTTCATAAACTCATTTAGTATAGAAGATATCTAAGGGGTTTTCA
AAGTTTGGGGAGATATTTTTGTGTTTTAATTATCGTTTCATATAATTTGA
ACGGATTTTAGAATATTTTATTGTTTTGTTGTGTTCATATAAATTTTGAT
AAACCGAAAGTGAAAAGATTCAAGATGGTGATATTTTATCTACTATATAT
ACTTCACTTGACTCAGCGTCATCAAAAAACAACTTTTTATCAAATCTTTT
TCCGTAATACTTTTTCGGCAGGATTCTAAATTTCATCTTATCTCCGCAAG
TAAAACTTATTGCTAGCCGGGGAGGCGAGATTCCCTGGAATTAATACGCC
GTAATTTCAACTTTGTTGTTTTACCCTGATTTTTTTCAGCGGTGTGCAAC
CCTGTTTGTGTGAATGGAGAATGTGCAGCACCTTCCACTTGTTCTTGTCA
ACCTGGCTTTGATGGAAGTCAGTGTGAAAGTGGTAAATTTCTTCATGTCA
TCTAAATTCACTCATTTCTGTTAAAACAAAACTGTTGCTATTATGGAAGC
AATTGTCGCAACAAAGGGCCGTAGAAATAGTTTAAACTTGTTTTTATCAG
ACATCTATTAAGCTTCTTGGAGAGTGCTCGATTCGATCTTCATTTTCTTA
TTTTTCCCCTTCCTTCCAGATATTGACGAGTGTGCGTTAGGATCCGACGG
ATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTA
ATCCTGGATACTTTTTGTCTTCTGATAACACAACATGCGAAGGTAAAGGA
AGAAGACGTGTCTCTCTTGTTTTAATTTTACTTGTCAACAATACAACTTT
TCGACCGTAGCCGGCAATTGCCGCGCGGGCATTTTTTGCTCGCTTTATCC
CACTAAAACCGTCTCAGTCTTTTTTCCGCACCTTTAGACAATAGAAAAAG
GTGTAAAAAAAGGATTGGATCGAGTTTAGGTGGATAATTAAACATTAAAT
CGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGGTGTATTACTAATC
GTAAAAACCAAACTAAATCGCATGCACTAATCTATTCACTGCATAACCAA
ATAAATAATGAGAGGATTTACAAATCTCGGACTTTAATGATCAAAATATA
TATTGAAGGCTCATCTTCTAGCCCTTAATCAACATGTCTGTTTTAGAAAC
TAAATTTTTAAAGCTTTCCCCGGAAGGTAATAAGTTTAGTCTGGATTTGC
ATTTCAGAGATTATATTTATCAATTTCAATCGAATGCTTACCGTTTAGGT
CGATGCTCGATTCGATCTTCATTTCTTATTTTTCCCCTTCCTTCAGATAT
TGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACA
CCGAAGGGTCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTCT
GATAACAAAACTTGTGAAGGTAAAGGAAGAAGACGTGTCTCCCTTGTTTT
TATTTTACTTGTCAAGAATACTACTTTTCGACCGTAGCCGCCAATTGCCG
CGCGGGCATTTTTCGTCCGATTTATCCCACCAAAACAGTCTCAGTCTTTT
TTCCGCACCTTGAGACAATAGAAAAAGGTGTAAAAAAAGGATTGGATCGA
GTTTAGGTGGATAATTAAACATTAAATTGGCACGCGCCTGACCGCGTGAC
TACTGTCGAAAAGGTAGGTGTATTACTAATCGTAAAAACCAAACTAAATC
GCATGCACTAATCTATTCACTGCATAACCAAATTAATAATGAGAGGATTT
ACAAATCTCGGACTTTAATGATCAAAATATATATTGAAGGCTCATCTTCT
AGCCCTTAATCAACATGTCTGTTTTAGCATGGAGGTATAAAGAAACAGGA
GAAGTATGCTATTGTAACCAAGCTCGCCCTACGATTAAAAAAGTTACGAT
GTATGCATGCTCATAATCTCATATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGCTTAGAATTTCTTTTGATACATTTTATAAAAGA
AATCAAAAGACTTTAACGACCAATTACCGACACATTCAACTCCTGTTTTT
CTTTATACCTCTATGGTTTTAGAAACAAAATTTTTAAAGCTTTCCCCGGA
AGGCAATAAGTTTTGTCTGGATTTGCATTTCAGAGATTATATTTATCAAT
TTCAATCGAATGCAATTTACACCTGTTCATCGTTTACCGTTTAGGTCGAT
GCTCGATTCGATCTTCATTTTCTTATTTTTCCCCTTCCTTCAGATATTGA
CGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACTG
AAGGCTCGTTCAATTGTACTTGTAATCCTGGATACCGATTTTCTTCTGAT
AACACAGCTTGTGAAGGTCTGTAATTATGATTCAAATTTCGCCCGTGTTT
GAAAAGTGCTTATTTTTTGCTTAATGTCCCCAGCGAACTTTTCGACGCTC
TGTTTAAGAAACCAGTGTTGCTTCTTTTCTGCGATAAAACCGCTGACGGC
TGATTTGTCCCATATAGAGCCCCTTGTCTTTAATTTAATTATTGATTCTC
TTTTTAGTTGATATATTGGCTATGATTGCACCATGGTCGAATTGGACAGA
TTGGGATAAGCCCTGCGGAGGAGGTTTTCAGTTCAGAACATGAACTTGTG
ACCCTCCACCGCCGTTTCAAGCATTGTGTGCAGAACACGGGGGTGATGAA
GAAAAACGTCTTTGTAACACAGATATCCTATGTCCAGGTGCGTCTCTCGT
ATTTTTTGATCTCCTACTCAGAGTCACTTGCACCACTTAGTAATTTTACT
GGTGGACGTTATACATACCATTGGTAAACGCTATCATAACAAAGTAAACA
ACTAAAGGCCTGGTGGGCTAGACACGAGTCTGGTAATATTAAAGTTATAA
TAAAACTAACTTTTCTGATCGATAGTTCTGATGAGGAACAAGGTTACTTC
ATTGTTTTAAGCTGTTAAGATCGACTAGTCACCGATCACCTGTCACTGAT
CTGAATTTTTCTACGATGAGATATTTTGCTTTCGCATCGTATCGGTTAGT
ATAGTTTAAGTTAATTTATACTTTTGCACGGTTTTCAAGAGTTCTACTCA
TTGAGATGGGAACGCCAACCACTATATCAGATCATTAGAAACTGCAATCA
AAGTCATAATATTTGAGAAAAAAGGGAAATTCCCACGAAATCTTACAACC
ACAAACGATTTAGAAGCGCTCTAAAGTAGGTTGGACGGGTAGAGTTTTAA
CTCTGAGTTTTAACGCTAGACTTAAGACTTAGGGCCTTAGGATCTGAGGA
ACTAAAAATTCAAGAATGGTCCAATAGGGCTCAGAATATAGCCTGGAAGT
CTATAAACCCCTCCCGAATTGAAATATTCGAATAAATTTATCAATTTGCC
CAAAAGTGACTTTTTCGCCCGACTTTAAATTGCTGAAAACAAAGAATTAA
CCAAAATTCCCAATATATTTTGACCGAGATTGTGGCTCTAGCAAGAAATG
TTCGCTTCACTTGAGATTCTAGACATTTCGAGGTGGGGGGTGGGGGGTTG
GTGCATGAAAAACAGTATCGACATTTCAACAAGTTTACTTAGGGATGATT
TTTATGTGAAAAGAAATCATCTCATTATTTGAATTTTGTAGAAATGTGTT
CGAAAATGAAATCAATTGATTGTTCGAGTGTTGTTGACATTTATGATATG
GCCATCCTTAAAACGAACCACTCATATATTGGAATGAACGAGACATCAGT
CAATTCGTCTTTGGTTGCCATAGCAACATGGAATACTCAAAAAATTCAAA
GTCTTTGTAAAGGTATTGTTTTTTCTACATCAATATGATGGACGCTATAG
AATAACTTATCTGTTATTATACATAAA

Coding sequence (CDS) from alignment at scaffold_482:393956..402382-

>TCONS_00068309 ID=TCONS_00068309|Name=TCONS_00068309|organism=Clytia hemisphaerica|type=CDS|length=6552bp|location=Sequence derived from alignment at scaffold_482:393956..402382- (Clytia hemisphaerica)
TTGATATATTGGCTATGATTGCACCATGGTCGAATTGGACAGATTGGGAT
AAGCCCTGCGGAGGAGGTTTTCAGTTCAGAACATGAATATTGACGAGTGT
GCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACTGAAGGCTC
GTTCAATTGTACTTGTAATCCTGGATACCGATTTTCTTCTGATAACACAG
CTTGTGAAGATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAA
AATTGTGTAAACACCGAAGGGTCGTTCAATTGTACTTGTAATCCTGGATA
CTTTTTGTCTTCTGATAACAAAACTTGTGAAGATATTGACGAGTGTGCGT
TAGGATCCGACGGATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTC
AATTGTACTTGTAATCCTGGATACTTTTTGTCTTCTGATAACACAACATG
CGAAGCGGTGTGCAACCCTGTTTGTGTGAATGGAGAATGTGCAGCACCTT
CCACTTGTTCTTGTCAACCTGGCTTTGATGGAAGTCAGTGTGAAAGTGAA
CTCAACGTATCTCTTATTATCAACAAGTAACGAGGTACAGAGTTGTATAC
CAGGATATTTGTTGCCCTGGTTGGGCCCAGCAAGGTGATAGCTGTCCAAT
TCTTCAAACGTGTGCACTCAATCGCACTTTGAGTCCTACTTGACAACGAT
CACTCTGTCAAGAACAGTTTATCAGCAATACCAAATCTCTTGTGGATGGT
GGGGCTCGTCGACCTGTTACAGAACAAGATGGAAATCGTGGAATCGAATG
GGGAGCTGACTCCAGGAAATTGATATATTGGCTATGATTGCACCATGGTC
GAATTGGACAGATTGGGATAAGCCCTGCGGAGGAGGTTTTCAGTTCAGAA
CATGAATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATT
GTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTAATCCTGGATACCGA
TTTTCTTCTGATAACACAGCTTGTGAAGATATTGACGAGTGTGCGTTAGG
ATCCGACGGATGCCAACAAAATTGTGTAAACACCGAAGGGTCGTTCAATT
GTACTTGTAATCCTGGATACTTTTTGTCTTCTGATAACAAAACTTGTGAA
GATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGT
AAACACTGAAGGCTCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGT
CTTCTGATAACACAACATGCGAAGCGGTGTGCAACCCTGTTTGTGTGAAT
GGAGAATGTGCAGCACCTTCCACTTGTTCTTGTCAACCTGGCTTTGATGG
AAGTCAGTGTGAAAGTGAACTCAACGTATCTCTTATTATCAACAAGTAAC
GAGGTACAGAGTTGTATACCAGGATATTTGTTGCCCTGGTTGGGCCCAGC
AAGGTGATAGCTGTCCAATTCTTCAAACGTGTGCACTCAATCGCACTTTG
AGTCCTACTTGACAACGATCACTCTGTCAAGAACAGTTTATCAGCAATAC
CAAATCTCTTGTGGATGGTGGGGCTCGTCGACCTGTTACAGAACAAGATG
GAAATCGTGGAATCGAATGGGGAGCTGACTCCAGGAAATTGATATATTGG
CTATGATTGCACCATGGTCGAATTGGACAGATTGGGATAAGCCCTGCGGA
GGAGGTTTTCAGTTCAGAACATGAATATTGACGAGTGTGCGTTAGGATCC
GACGGATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTAC
TTGTAATCCTGGATACCGATTTTCTTCTGATAACACAGCTTGTGAAGATA
TTGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAAC
ACCGAAGGGTCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTC
TGATAACAAAACTTGTGAAGATATTGACGAGTGTGCGTTAGGATCCGACG
GATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGT
AATCCTGGATACTTTTTGTCTTCTGATAACACAACATGCGAAGCGGTGTG
CAACCCTGTTTGTGTGAATGGAGAATGTGCAGCACCTTCCACTTGTTCTT
GTCAACCTGGCTTTGATGGAAGTCAGTGTGAAAGTGAACTCAACGTATCT
CTTATTATCAACAAGTAACGAGGTACAGAGTTGTATACCAGGATATTTGT
TGCCCTGGTTGGGCCCAGCAAGGTGATAGCTGTCCAATTCTTCAAACGTG
TGCACTCAATCGCACTTTGAGTCCTACTTGACAACGATCACTCTGTCAAG
AACAGTTTATCAGCAATACCAAATCTCTTGTGGATGGTGGGGCTCGTCGA
CCTGTTACAGAACAAGATGGAAATCGTGGAATCGAATGGGGAGCTGACTC
CAGGAAATTGATATATTGGCTATGATTGCACCATGGTCGAATTGGACAGA
TTGGGATAAGCCCTGCGGAGGAGGTTTTCAGTTCAGAACATGAATATTGA
CGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACTG
AAGGCTCGTTCAATTGTACTTGTAATCCTGGATACCGATTTTCTTCTGAT
AACACAGCTTGTGAAGATATTGACGAGTGTGCGTTAGGATCCGACGGATG
CCAACAAAATTGTGTAAACACCGAAGGGTCGTTCAATTGTACTTGTAATC
CTGGATACTTTTTGTCTTCTGATAACAAAACTTGTGAAGATATTGACGAG
TGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACTGAAGG
CTCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTCTGATAACA
CAACATGCGAAGCGGTGTGCAACCCTGTTTGTGTGAATGGAGAATGTGCA
GCACCTTCCACTTGTTCTTGTCAACCTGGCTTTGATGGAAGTCAGTGTGA
AAGTGAACTCAACGTATCTCTTATTATCAACAAGTAACGAGGTACAGAGT
TGTATACCAGGATATTTGTTGCCCTGGTTGGGCCCAGCAAGGTGATAGCT
GTCCAATTCTTCAAACGTGTGCACTCAATCGCACTTTGAGTCCTACTTGA
CAACGATCACTCTGTCAAGAACAGTTTATCAGCAATACCAAATCTCTTGT
GGATGGTGGGGCTCGTCGACCTGTTACAGAACAAGATGGAAATCGTGGAA
TCGAATGGGGAGCTGACTCCAGGAAATTGATATATTGGCTATGATTGCAC
CATGGTCGAATTGGACAGATTGGGATAAGCCCTGCGGAGGAGGTTTTCAG
TTCAGAACATGAATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAA
CAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTAATCCTGG
ATACCGATTTTCTTCTGATAACACAGCTTGTGAAGATATTGACGAGTGTG
CGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACCGAAGGGTCG
TTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTCTGATAACAAAAC
TTGTGAAGATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAA
ATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTAATCCTGGATAC
TTTTTGTCTTCTGATAACACAACATGCGAAGCGGTGTGCAACCCTGTTTG
TGTGAATGGAGAATGTGCAGCACCTTCCACTTGTTCTTGTCAACCTGGCT
TTGATGGAAGTCAGTGTGAAAGTGAACTCAACGTATCTCTTATTATCAAC
AAGTAACGAGGTACAGAGTTGTATACCAGGATATTTGTTGCCCTGGTTGG
GCCCAGCAAGGTGATAGCTGTCCAATTCTTCAAACGTGTGCACTCAATCG
CACTTTGAGTCCTACTTGACAACGATCACTCTGTCAAGAACAGTTTATCA
GCAATACCAAATCTCTTGTGGATGGTGGGGCTCGTCGACCTGTTACAGAA
CAAGATGGAAATCGTGGAATCGAATGGGGAGCTGACTCCAGGAAATTGAT
ATATTGGCTATGATTGCACCATGGTCGAATTGGACAGATTGGGATAAGCC
CTGCGGAGGAGGTTTTCAGTTCAGAACATGAATATTGACGAGTGTGCGTT
AGGATCCGACGGATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTCA
ATTGTACTTGTAATCCTGGATACCGATTTTCTTCTGATAACACAGCTTGT
GAAGATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTG
TGTAAACACCGAAGGGTCGTTCAATTGTACTTGTAATCCTGGATACTTTT
TGTCTTCTGATAACAAAACTTGTGAAGATATTGACGAGTGTGCGTTAGGA
TCCGACGGATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTG
TACTTGTAATCCTGGATACTTTTTGTCTTCTGATAACACAACATGCGAAG
CGGTGTGCAACCCTGTTTGTGTGAATGGAGAATGTGCAGCACCTTCCACT
TGTTCTTGTCAACCTGGCTTTGATGGAAGTCAGTGTGAAAGTGAACTCAA
CGTATCTCTTATTATCAACAAGTAACGAGGTACAGAGTTGTATACCAGGA
TATTTGTTGCCCTGGTTGGGCCCAGCAAGGTGATAGCTGTCCAATTCTTC
AAACGTGTGCACTCAATCGCACTTTGAGTCCTACTTGACAACGATCACTC
TGTCAAGAACAGTTTATCAGCAATACCAAATCTCTTGTGGATGGTGGGGC
TCGTCGACCTGTTACAGAACAAGATGGAAATCGTGGAATCGAATGGGGAG
CTGACTCCAGGAAATTGATATATTGGCTATGATTGCACCATGGTCGAATT
GGACAGATTGGGATAAGCCCTGCGGAGGAGGTTTTCAGTTCAGAACATGA
ATATTGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTA
AACACTGAAGGCTCGTTCAATTGTACTTGTAATCCTGGATACCGATTTTC
TTCTGATAACACAGCTTGTGAAGATATTGACGAGTGTGCGTTAGGATCCG
ACGGATGCCAACAAAATTGTGTAAACACCGAAGGGTCGTTCAATTGTACT
TGTAATCCTGGATACTTTTTGTCTTCTGATAACAAAACTTGTGAAGATAT
TGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACA
CTGAAGGCTCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTCT
GATAACACAACATGCGAAGCGGTGTGCAACCCTGTTTGTGTGAATGGAGA
ATGTGCAGCACCTTCCACTTGTTCTTGTCAACCTGGCTTTGATGGAAGTC
AGTGTGAAAGTGAACTCAACGTATCTCTTATTATCAACAAGTAACGAGGT
ACAGAGTTGTATACCAGGATATTTGTTGCCCTGGTTGGGCCCAGCAAGGT
GATAGCTGTCCAATTCTTCAAACGTGTGCACTCAATCGCACTTTGAGTCC
TACTTGACAACGATCACTCTGTCAAGAACAGTTTATCAGCAATACCAAAT
CTCTTGTGGATGGTGGGGCTCGTCGACCTGTTACAGAACAAGATGGAAAT
CGTGGAATCGAATGGGGAGCTGACTCCAGGAAATTGATATATTGGCTATG
ATTGCACCATGGTCGAATTGGACAGATTGGGATAAGCCCTGCGGAGGAGG
TTTTCAGTTCAGAACATGAATATTGACGAGTGTGCGTTAGGATCCGACGG
ATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTA
ATCCTGGATACCGATTTTCTTCTGATAACACAGCTTGTGAAGATATTGAC
GAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACCGA
AGGGTCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTCTGATA
ACAAAACTTGTGAAGATATTGACGAGTGTGCGTTAGGATCCGACGGATGC
CAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTAATCC
TGGATACTTTTTGTCTTCTGATAACACAACATGCGAAGCGGTGTGCAACC
CTGTTTGTGTGAATGGAGAATGTGCAGCACCTTCCACTTGTTCTTGTCAA
CCTGGCTTTGATGGAAGTCAGTGTGAAAGTGAACTCAACGTATCTCTTAT
TATCAACAAGTAACGAGGTACAGAGTTGTATACCAGGATATTTGTTGCCC
TGGTTGGGCCCAGCAAGGTGATAGCTGTCCAATTCTTCAAACGTGTGCAC
TCAATCGCACTTTGAGTCCTACTTGACAACGATCACTCTGTCAAGAACAG
TTTATCAGCAATACCAAATCTCTTGTGGATGGTGGGGCTCGTCGACCTGT
TACAGAACAAGATGGAAATCGTGGAATCGAATGGGGAGCTGACTCCAGGA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042630XLOC_042630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068309-exon-scaffold_482-1575043694:402341..402382TCONS_00068309-exon-scaffold_482-1575043694:402341..402382Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:401989..402114TCONS_00068309-exon-scaffold_482-1575043694:401989..402114Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:401084..401187TCONS_00068309-exon-scaffold_482-1575043694:401084..401187Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:398601..398693TCONS_00068309-exon-scaffold_482-1575043694:398601..398693Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:398291..398413TCONS_00068309-exon-scaffold_482-1575043694:398291..398413Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:397614..397736TCONS_00068309-exon-scaffold_482-1575043694:397614..397736Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:395467..395589TCONS_00068309-exon-scaffold_482-1575043694:395467..395589Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:395096..395275TCONS_00068309-exon-scaffold_482-1575043694:395096..395275Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1575043694:393956..394191TCONS_00068309-exon-scaffold_482-1575043694:393956..394191Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:402341..402382TCONS_00068309-exon-scaffold_482-1510915933:402341..402382Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:401989..402114TCONS_00068309-exon-scaffold_482-1510915933:401989..402114Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:401084..401187TCONS_00068309-exon-scaffold_482-1510915933:401084..401187Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:398601..398693TCONS_00068309-exon-scaffold_482-1510915933:398601..398693Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:398291..398413TCONS_00068309-exon-scaffold_482-1510915933:398291..398413Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:397614..397736TCONS_00068309-exon-scaffold_482-1510915933:397614..397736Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:395467..395589TCONS_00068309-exon-scaffold_482-1510915933:395467..395589Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:395096..395275TCONS_00068309-exon-scaffold_482-1510915933:395096..395275Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1510915933:393956..394191TCONS_00068309-exon-scaffold_482-1510915933:393956..394191Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:402341..402382TCONS_00068309-exon-scaffold_482-1491911889:402341..402382Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:401989..402114TCONS_00068309-exon-scaffold_482-1491911889:401989..402114Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:401084..401187TCONS_00068309-exon-scaffold_482-1491911889:401084..401187Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:398601..398693TCONS_00068309-exon-scaffold_482-1491911889:398601..398693Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:398291..398413TCONS_00068309-exon-scaffold_482-1491911889:398291..398413Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:397614..397736TCONS_00068309-exon-scaffold_482-1491911889:397614..397736Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:395467..395589TCONS_00068309-exon-scaffold_482-1491911889:395467..395589Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:395096..395275TCONS_00068309-exon-scaffold_482-1491911889:395096..395275Clytia hemisphaericaexon
TCONS_00068309-exon-scaffold_482-1491911889:393956..394191TCONS_00068309-exon-scaffold_482-1491911889:393956..394191Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068309-proteinTCONS_00068309-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:393956..402382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.205758	0	0	0	0	0	0	0.361306	0	0	0	0.299847	0.436978	0.358418	1.24905	0	0.652581	0	0.393381	0	0	0.869485	0.0367719	0.103211	1.00666	0.0101996	0	0.885899	1.05257
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR000742EGF-like_dom
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR018097EGF_Ca-bd_CS
IPR013032EGF-like_CS
IPR011489EMI_domain
IPR009030Growth_fac_rcpt_
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00068309 vs. Swiss-Prot (Human)
Match: VWCE (von Willebrand factor C and EGF domain-containing protein OS=Homo sapiens GN=VWCE PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 3.935e-33
Identity = 86/233 (36.91%), Postives = 114/233 (48.93%), Query Frame = 2 
Query:  230 CCPGWAQQ--GDSCPIPVCNPVCVNGECAAPSTCSCQPGFDGSQCE------------------------------------------SDIDECALGSDGCQQNCVNTEGSFNCTCNPGYFLSSDNTTCEDIDECALGSDGCQQNCVNTEGSFNCTCNPGYFLSSDNKTCEDIDEC--ALGSDGCQQNCVNTEGSFNCTCNPGYRFSSDNTACEVDILAMIAPWSNWTDWDKP 790
            CCPGWA    G  C +P+C+  C +G C AP+ CSCQ G  G+ C                                           +DIDEC   S  C+ +CVNTEG F C C PG  LS+D  +C+D DEC LG+  CQQ C N+ GS+ C+C  G+ L  +  +C D++EC   L    C  +C NT GSF CTC PG+R  +D  +CE    A++AP +       P
Sbjct:   53 CCPGWAPSMGGGHCTLPLCSFGCGSGICIAPNVCSCQDGEQGATCPETHGPCGEYGCDLTCNHGGCQEVARVCPVGFSMTETAVGIRCTDIDECVTSS--CEGHCVNTEGGFVCECGPGMQLSADRHSCQDTDEC-LGTP-CQQRCKNSIGSYKCSCRTGFHLHGNRHSCVDVNECRRPLERRVCHHSCHNTVGSFLCTCRPGFRLRADRVSCEAFPKAVLAPSAILQPRQHP 281
The following BLAST results are available for this feature:
BLAST of TCONS_00068309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VWCE3.935e-3336.91von Willebrand factor C and EGF domain-containing ... [more]
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