TCONS_00068308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068308
Unique NameTCONS_00068308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length904

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068308 ID=TCONS_00068308|Name=TCONS_00068308|organism=Clytia hemisphaerica|type=transcript|length=904bp
GATGGAAATCGTGGAATCGAATGGGGAGCTGACTCCAGGAAATTCAAACG
TGTGCACTCAATCGCACTTTGAGTCCTACTTGACAACGATCACTCTGTCA
AGAACAGTTTATCAGCAATACCAAATCTCTTGTGGATGGTGGGGCTCGTC
GACCTGTTACAGAACAAGAACTCAACGTATCTCTTATTATCAACAAGTAA
CGAGGTACAGAGTTGTATACCAGGATATTTGTTGCCCTGGTTGGGCCCAG
CAAGGTGATAGCTGTCCAATTCCGGTGTGCAACCCTGTTTGTGTGAATGG
AGAATGTGCAGCACCTTCCACTTGTTCTTGTCAACCTGGCTTTGATGGAA
GTCAGTGTGAAAGTGATATTGACGAGTGTGCGTTAGGATCCGACGGATGC
CAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTAATCC
TGGATACCGATTTTCTTCTGATAACACAGCTTGTGAAGTTGATATATTGG
CTATGATTGCACCATGGTCGAATTGGACAGATTGGGATAAGCCCTGCGGA
GGAGGTTTTCAGTTCAGAACATGAACTTGTGACCCTCCACCGCCGTTTCA
AGCATTGTGTGCAGAACACGGGGGTGATGAAGAAAAACGTCTTTGTAACA
CAGATATCCTATGTCCAGaaatgtgtTCGAAAATGAAATCAATTGATTGT
TCGAGTGTTGTTGACATTTATGATATGGCCATCCTTAAAACGAACCACTC
ATATATTGGAATGAACGAGACATCAGTCAATTCGTCTTTGGTTGCCATAG
CAACATGGAAtactcaaaaaattcaaagtcttTGTAAAGGTAttgttttt
tctacatcaatatGATGGACGCTATAGAATAACTTATCTGTTATTATACA
TAAA
Run BLAST on NCBI

transcript from alignment at scaffold_482:393956..402382-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068308 ID=TCONS_00068308|Name=TCONS_00068308|organism=Clytia hemisphaerica|type=transcript|length=8427bp|location=Sequence derived from alignment at scaffold_482:393956..402382- (Clytia hemisphaerica)
GATGGAAATCGTGGAATCGAATGGGGAGCTGACTCCAGGAAAGTTAGTCC
AGTTAATCTTTTTCAGCCATATTTTGAACATATTACTTGATGAAAATACT
CCTTCGGAAAAGATAATTAACCTAATAGTCTAGCAAGCTAGACGACTAAT
TCAGAAATAGTAGAAATAAAGCAAAAAGTAATTATCATATAACGCCTATA
CTACTGTATTACATGCATTATAAACGACTCCAGTCTATTAACCTAATAAA
CTGTGATTTATGTTATAGTTCAAACGTGTGCACTCAATCGCACTTTGAGT
CCTACTTGACAACGATCACTCTGTCAAGAACAGTTTATCAGCAATACCAA
ATCTCTTGTGGATGGTGGGGCTCGTCGACCTGTTACAGAACAAGGTACTG
ATAAACTCATTTACTTTGTCTCTCACTACTGTCAGCAGAATTTAAAATAC
AAGTTCTCAAATCGCACAGGAAAAGATATTTTACAAAAGTTTTCTGCTTT
TTAAATTTTAAACTTTAGCCTGCTTTAGCTTCTCTACTTTTTTTTAAAAT
AACAAATCAATGAAATGTAAAGCGAAAATATTAGTTTTCATATCGGGAGG
GGGGTGTTGATTGTTGGAGCACGACAGTACGTTCAACCCAAAATTAGGCC
TTTGAAAAGGGACCGTTCAAATTTTAGTAAATTTTGTCGAAAAATCGACC
CTTTGGTGCATTTTATGCAAAATGTGGTTAGATTTTCCAAATTTTACACC
CTTAGAGTGCAATTTCTCTCGTCTTTGCTCATTTCGACCCTTACAGTGCA
CTTTGGGAAGCTTGAAAAAAGGACCATTAAGTGCCGCACGCACAGTAGGT
TGTTCACCTTGAGTGCCCCCCCCCCCCGGTTTTTATCCCCTTATAAAGGT
AAATCAGCGAAAAAGTGAGCCTTACCTCTGTAAGGCTCACCTCTGTAACA
ATCTTCGTTCTAACCTCAGAGAGAGAGTTTTTTGACTTTTCATTGTTTTC
GTATCCTTAAAAGTAACAGCAAAATATCCGACCCTTAGATAGACTATTTT
GACTAATTGTTGTTTTTTGTAATCGTGTTAGAGACATTGGAAAAGTCAAA
AACCGACCCTTACCGTCCGCACATACCTAGCATTCATTTTTTCCTTCCCG
TTCCACTTGACTTGACTTGACTTCACTTTTTCAATGCCTTTTCAGAACTC
AACGTATCTCTTATTATCAACAAGTAACGAGGTACAGAGTTGTATACCAG
GATATTTGTTGCCCTGGTTGGGCCCAGCAAGGTGATAGCTGTCCAATTCG
TAAGTAACCAGCATCTTGATATATCTTGATCAGATGAGATTAAAGTCATT
TATACTGAAACTTTTTTTAGTATGTAATACTTGGCTCAGTGTAATTTAGA
AGACTCCATTTTTGGTTCTGCTTGATGTGGTAGCTAATTCATACCACTAG
ATCCAGTCCCTTTTTGCGTAAAATGAATAGAAAACTACTAGACGGTTCCC
GTCGTCGCAAACGCCGGTTAACGGTTTTGCTTGCACATCAAAAGCCTTTA
AAATACTATAATGTGGGTTAATGCCTGACATCGTTTTGGNNNNNNNNNNN
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NNNNNNNNNNTTTAATAGGGGTTCAGTTCTTACATCTACGCACACTTCTC
TTAGCAATTTGGACGTAATGTCTCTAATTTCATTGTGTCTCAAAGACACG
AATCCTCCCTTCTTGTCCGATCTTTTAATCCGAGTTTTCTACGCTTGTCA
AACTTAGCGCGAGACTTTTTGTATCAAAGGTGGATAGGTTTTCCAGCCGC
GGCGTTCAAATTTTAGAAACCTTAACATATGTTACTGGGCTAGCGTTACA
GACATTTTTCATAAACTCATTTAGTATAGAAGATATCTAAGGGGTTTTCA
AAGTTTGGGGAGATATTTTTGTGTTTTAATTATCGTTTCATATAATTTGA
ACGGATTTTAGAATATTTTATTGTTTTGTTGTGTTCATATAAATTTTGAT
AAACCGAAAGTGAAAAGATTCAAGATGGTGATATTTTATCTACTATATAT
ACTTCACTTGACTCAGCGTCATCAAAAAACAACTTTTTATCAAATCTTTT
TCCGTAATACTTTTTCGGCAGGATTCTAAATTTCATCTTATCTCCGCAAG
TAAAACTTATTGCTAGCCGGGGAGGCGAGATTCCCTGGAATTAATACGCC
GTAATTTCAACTTTGTTGTTTTACCCTGATTTTTTTCAGCGGTGTGCAAC
CCTGTTTGTGTGAATGGAGAATGTGCAGCACCTTCCACTTGTTCTTGTCA
ACCTGGCTTTGATGGAAGTCAGTGTGAAAGTGGTAAATTTCTTCATGTCA
TCTAAATTCACTCATTTCTGTTAAAACAAAACTGTTGCTATTATGGAAGC
AATTGTCGCAACAAAGGGCCGTAGAAATAGTTTAAACTTGTTTTTATCAG
ACATCTATTAAGCTTCTTGGAGAGTGCTCGATTCGATCTTCATTTTCTTA
TTTTTCCCCTTCCTTCCAGATATTGACGAGTGTGCGTTAGGATCCGACGG
ATGCCAACAAAATTGTGTAAACACTGAAGGCTCGTTCAATTGTACTTGTA
ATCCTGGATACTTTTTGTCTTCTGATAACACAACATGCGAAGGTAAAGGA
AGAAGACGTGTCTCTCTTGTTTTAATTTTACTTGTCAACAATACAACTTT
TCGACCGTAGCCGGCAATTGCCGCGCGGGCATTTTTTGCTCGCTTTATCC
CACTAAAACCGTCTCAGTCTTTTTTCCGCACCTTTAGACAATAGAAAAAG
GTGTAAAAAAAGGATTGGATCGAGTTTAGGTGGATAATTAAACATTAAAT
CGGCACGCGCCTGACCGCGCGACTACGGTCGAAAAGGTGTATTACTAATC
GTAAAAACCAAACTAAATCGCATGCACTAATCTATTCACTGCATAACCAA
ATAAATAATGAGAGGATTTACAAATCTCGGACTTTAATGATCAAAATATA
TATTGAAGGCTCATCTTCTAGCCCTTAATCAACATGTCTGTTTTAGAAAC
TAAATTTTTAAAGCTTTCCCCGGAAGGTAATAAGTTTAGTCTGGATTTGC
ATTTCAGAGATTATATTTATCAATTTCAATCGAATGCTTACCGTTTAGGT
CGATGCTCGATTCGATCTTCATTTCTTATTTTTCCCCTTCCTTCAGATAT
TGACGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACA
CCGAAGGGTCGTTCAATTGTACTTGTAATCCTGGATACTTTTTGTCTTCT
GATAACAAAACTTGTGAAGGTAAAGGAAGAAGACGTGTCTCCCTTGTTTT
TATTTTACTTGTCAAGAATACTACTTTTCGACCGTAGCCGCCAATTGCCG
CGCGGGCATTTTTCGTCCGATTTATCCCACCAAAACAGTCTCAGTCTTTT
TTCCGCACCTTGAGACAATAGAAAAAGGTGTAAAAAAAGGATTGGATCGA
GTTTAGGTGGATAATTAAACATTAAATTGGCACGCGCCTGACCGCGTGAC
TACTGTCGAAAAGGTAGGTGTATTACTAATCGTAAAAACCAAACTAAATC
GCATGCACTAATCTATTCACTGCATAACCAAATTAATAATGAGAGGATTT
ACAAATCTCGGACTTTAATGATCAAAATATATATTGAAGGCTCATCTTCT
AGCCCTTAATCAACATGTCTGTTTTAGCATGGAGGTATAAAGAAACAGGA
GAAGTATGCTATTGTAACCAAGCTCGCCCTACGATTAAAAAAGTTACGAT
GTATGCATGCTCATAATCTCATATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNGCTTAGAATTTCTTTTGATACATTTTATAAAAGA
AATCAAAAGACTTTAACGACCAATTACCGACACATTCAACTCCTGTTTTT
CTTTATACCTCTATGGTTTTAGAAACAAAATTTTTAAAGCTTTCCCCGGA
AGGCAATAAGTTTTGTCTGGATTTGCATTTCAGAGATTATATTTATCAAT
TTCAATCGAATGCAATTTACACCTGTTCATCGTTTACCGTTTAGGTCGAT
GCTCGATTCGATCTTCATTTTCTTATTTTTCCCCTTCCTTCAGATATTGA
CGAGTGTGCGTTAGGATCCGACGGATGCCAACAAAATTGTGTAAACACTG
AAGGCTCGTTCAATTGTACTTGTAATCCTGGATACCGATTTTCTTCTGAT
AACACAGCTTGTGAAGGTCTGTAATTATGATTCAAATTTCGCCCGTGTTT
GAAAAGTGCTTATTTTTTGCTTAATGTCCCCAGCGAACTTTTCGACGCTC
TGTTTAAGAAACCAGTGTTGCTTCTTTTCTGCGATAAAACCGCTGACGGC
TGATTTGTCCCATATAGAGCCCCTTGTCTTTAATTTAATTATTGATTCTC
TTTTTAGTTGATATATTGGCTATGATTGCACCATGGTCGAATTGGACAGA
TTGGGATAAGCCCTGCGGAGGAGGTTTTCAGTTCAGAACATGAACTTGTG
ACCCTCCACCGCCGTTTCAAGCATTGTGTGCAGAACACGGGGGTGATGAA
GAAAAACGTCTTTGTAACACAGATATCCTATGTCCAGGTGCGTCTCTCGT
ATTTTTTGATCTCCTACTCAGAGTCACTTGCACCACTTAGTAATTTTACT
GGTGGACGTTATACATACCATTGGTAAACGCTATCATAACAAAGTAAACA
ACTAAAGGCCTGGTGGGCTAGACACGAGTCTGGTAATATTAAAGTTATAA
TAAAACTAACTTTTCTGATCGATAGTTCTGATGAGGAACAAGGTTACTTC
ATTGTTTTAAGCTGTTAAGATCGACTAGTCACCGATCACCTGTCACTGAT
CTGAATTTTTCTACGATGAGATATTTTGCTTTCGCATCGTATCGGTTAGT
ATAGTTTAAGTTAATTTATACTTTTGCACGGTTTTCAAGAGTTCTACTCA
TTGAGATGGGAACGCCAACCACTATATCAGATCATTAGAAACTGCAATCA
AAGTCATAATATTTGAGAAAAAAGGGAAATTCCCACGAAATCTTACAACC
ACAAACGATTTAGAAGCGCTCTAAAGTAGGTTGGACGGGTAGAGTTTTAA
CTCTGAGTTTTAACGCTAGACTTAAGACTTAGGGCCTTAGGATCTGAGGA
ACTAAAAATTCAAGAATGGTCCAATAGGGCTCAGAATATAGCCTGGAAGT
CTATAAACCCCTCCCGAATTGAAATATTCGAATAAATTTATCAATTTGCC
CAAAAGTGACTTTTTCGCCCGACTTTAAATTGCTGAAAACAAAGAATTAA
CCAAAATTCCCAATATATTTTGACCGAGATTGTGGCTCTAGCAAGAAATG
TTCGCTTCACTTGAGATTCTAGACATTTCGAGGTGGGGGGTGGGGGGTTG
GTGCATGAAAAACAGTATCGACATTTCAACAAGTTTACTTAGGGATGATT
TTTATGTGAAAAGAAATCATCTCATTATTTGAATTTTGTAGAAATGTGTT
CGAAAATGAAATCAATTGATTGTTCGAGTGTTGTTGACATTTATGATATG
GCCATCCTTAAAACGAACCACTCATATATTGGAATGAACGAGACATCAGT
CAATTCGTCTTTGGTTGCCATAGCAACATGGAATACTCAAAAAATTCAAA
GTCTTTGTAAAGGTATTGTTTTTTCTACATCAATATGATGGACGCTATAG
AATAACTTATCTGTTATTATACATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042630XLOC_042630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068308-exon-scaffold_482-1575043694:402341..402382TCONS_00068308-exon-scaffold_482-1575043694:402341..402382Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1575043694:401989..402114TCONS_00068308-exon-scaffold_482-1575043694:401989..402114Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1575043694:401084..401187TCONS_00068308-exon-scaffold_482-1575043694:401084..401187Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1575043694:398601..398693TCONS_00068308-exon-scaffold_482-1575043694:398601..398693Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1575043694:395467..395589TCONS_00068308-exon-scaffold_482-1575043694:395467..395589Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1575043694:395096..395275TCONS_00068308-exon-scaffold_482-1575043694:395096..395275Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1575043694:393956..394191TCONS_00068308-exon-scaffold_482-1575043694:393956..394191Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1510915933:402341..402382TCONS_00068308-exon-scaffold_482-1510915933:402341..402382Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1510915933:401989..402114TCONS_00068308-exon-scaffold_482-1510915933:401989..402114Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1510915933:401084..401187TCONS_00068308-exon-scaffold_482-1510915933:401084..401187Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1510915933:398601..398693TCONS_00068308-exon-scaffold_482-1510915933:398601..398693Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1510915933:395467..395589TCONS_00068308-exon-scaffold_482-1510915933:395467..395589Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1510915933:395096..395275TCONS_00068308-exon-scaffold_482-1510915933:395096..395275Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1510915933:393956..394191TCONS_00068308-exon-scaffold_482-1510915933:393956..394191Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1491911889:402341..402382TCONS_00068308-exon-scaffold_482-1491911889:402341..402382Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1491911889:401989..402114TCONS_00068308-exon-scaffold_482-1491911889:401989..402114Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1491911889:401084..401187TCONS_00068308-exon-scaffold_482-1491911889:401084..401187Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1491911889:398601..398693TCONS_00068308-exon-scaffold_482-1491911889:398601..398693Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1491911889:395467..395589TCONS_00068308-exon-scaffold_482-1491911889:395467..395589Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1491911889:395096..395275TCONS_00068308-exon-scaffold_482-1491911889:395096..395275Clytia hemisphaericaexon
TCONS_00068308-exon-scaffold_482-1491911889:393956..394191TCONS_00068308-exon-scaffold_482-1491911889:393956..394191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:393956..402382 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91119	0	0.40956	0.196626	0.115686	0	0	0	0.726644	0	9.36851e-07	0.522649	0.00143016	1.33947	0.307226	0.510062	0.487719	0	1.36653	0	0.0169569	0.371378	1.8561	3.77042e-08	0.929986	0	0	0	1.62639	1.75948
Blast
[Close]
BLAST of TCONS_00068308 vs. Swiss-Prot (Human)
Match: EGFL7 (Epidermal growth factor-like protein 7 OS=Homo sapiens GN=EGFL7 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.088e-17
Identity = 51/154 (33.12%), Postives = 74/154 (48.05%), Query Frame = 2 
Query:   35 PGNSNVCTQSHFESYLTTITLSRTVYQQYQISCGWWGSSTCYRTRTQRISXXXXXXXXXXXXXDICCPGWAQQGD---SCPIPVCNPVCVNG-ECAAPSTCSCQPGFDGSQCESDIDECALGSDGCQQNCVNTEGSFNCTCNPGYRFSSDNTAC 484
            PG      ++H +    + +  + VYQ +  +C    + + YRT   R +Y +         +  CCPGW +      +C   +C P C NG  C  P  C C  G+ G  C+SD+DEC+    GC Q CVNT GS+ C C  G+  S+D T C
Sbjct:   26 PGRRVCAVRAHGDP--VSESFVQRVYQPFLTTCDGHRACSTYRT-IYRTAYRRSPGLAPARPRYACCPGWKRTSGLPGACGAAICQPPCRNGGSCVQPGRCRCPAGWRGDTCQSDVDECSARRGGCPQRCVNTAGSYWCQCWEGHSLSADGTLC 176
The following BLAST results are available for this feature:
BLAST of TCONS_00068308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EGFL72.088e-1733.12Epidermal growth factor-like protein 7 OS=Homo sap... [more]
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