TCONS_00068306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068306
Unique NameTCONS_00068306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068306 ID=TCONS_00068306|Name=TCONS_00068306|organism=Clytia hemisphaerica|type=transcript|length=384bp
GCCAGATGCGATGTAAATAATCTCCAAAATAGCATCGATCAAATTGATGG
TGAAATCAGCACAATAGAAATTACCTTGGAAGAAAATGCCGAAACCAAAA
TGAACATTCGAAAGATCATCGATTGTCGACCTAATGTTTGGGGGAGACGA
GAGGAGTTATTCAAACATTATGAAGAACTTTGTCAACGTAAAGTAATCGT
ACAGCGAGTTCTGAATgatttgaagatgaagaagacaGTTCTTGAACAGG
AGAAGATACGTTGCATGAACAGAAGTTGGTTTCGCAAGACATTGGAGAGA
CATTGGATGCTATGAACTAAGGCTATATCAATCTCTATCAATTAGGTCCT
TGTTTTAAATTTATAACTTTGCACCTTCCACAAT
Run BLAST on NCBI

protein sequence of TCONS_00068306-protein

>TCONS_00068306-protein ID=TCONS_00068306-protein|Name=TCONS_00068306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
ARCDVNNLQNSIDQIDGEISTIEITLEENAETKMNIRKIIDCRPNVWGRR
EELFKHYEELCQRKVIVQRVLNDLKMKKTVLEQEKIRCMNRSWFRKTLER
HWML
Run BLAST on NCBI

transcript from alignment at scaffold_482:391130..392360-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068306 ID=TCONS_00068306|Name=TCONS_00068306|organism=Clytia hemisphaerica|type=transcript|length=1231bp|location=Sequence derived from alignment at scaffold_482:391130..392360- (Clytia hemisphaerica)
GCCAGATGCGATGTAAATAATCTCCAAAATAGCATCGATCAAATTGATGG
TGAAATCAGCACAATAGAAATTACCTTGGAAGAAAATGCCGAAACCAAAA
TGAACATTCGAAAGATCATCGATTGTCGACCTAATGTTTGGGGGAGACGA
GAGGAGTTATTCAAACATTATGAAGAACTTTGTCAACGTAAAGTAATCGT
ACAGCGAGTTCTGAATGATTTGAAGATGAAGAAGACAGTTCTTGAACAGG
AGAAGATACGTTGCATGAACAGAAGTTAGTGAAATTATTTCAGGGAGAGT
TTTAGAGANGAACAGGAGAAGATGCGTTGCTTGAACAGAAGTTAGTGAAA
TTATTTCAGGGAGAGTTTTAGAGAGAGCTCTACTCAGTGGTATAAAATCA
CACGTTTTTTCTTTATTAGAACCCAGTTTATAAGAACATTTAGGCTGAAA
TTCGTCGACAAATTAAGAACATCGTAAGAGCATGCCCAGCCTCAGTTTGG
AAAAAAATGACAAGAAACTACAATTTTTCCCTCTTTTCAAGCAGTTTTAA
CCAAACTTAGGGATGGATTTTCTAAAATCGAGAGTCAAATATTGTCCAAA
TTTTACCAACAAGCTCTTTATTTTGCATGATGTTGTCGATTTAAAGTAGT
CCGAAAAATTAAGAACGCATTTAAGAACATTTTAGGCTGAAAATTGCTAA
AAAAATAAGCACATCCAGGCTCAGCCAAATTTTAGGTGTTCTAATAAAAG
AAAACGTGTATTAATTAAAGGGACATAAAGTAGTAAAATATAAACATTGC
GCAATCCACGTGTCATTAAAGAGAACAATTAAAATCACGTGCCCAAAATA
AACTTGTAAAACAATTGAAACAATCAAAATCAGCCATATTTGTTTTTATT
TTTTATTTTGACATGTGACATTCGTTTTGATTTTGAATCCCGCTGCATAC
GGTTTGTTTATAAATTTTGTCAGTACTTTTATGTCCCTTTGAAGGTCTAA
TATTGGTATTAAATCTATTGCTTTTAGCTCTAAGAAAGCCAGTGGTATTC
ATTTTCCATGGAGAAAACAATGTTCACGATTCCCAGTTGAGATATTAAAC
GATATTACTTTCTCTTCTCAGGTTGGTTTCGCAAGACATTGGAGAGACAT
TGGATGCTATGAACTAAGGCTATATCAATCTCTATCAATTAGGTCCTTGT
TTTAAATTTATAACTTTGCACCTTCCACAAT

Coding sequence (CDS) from alignment at scaffold_482:391130..392360-

>TCONS_00068306 ID=TCONS_00068306|Name=TCONS_00068306|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_482:391130..392360- (Clytia hemisphaerica)
GTTGGTTTCGCAAGACATTGGAGAGACATTGGATGCTATGAGCCAGATGC
GATGTAAATAATCTCCAAAATAGCATCGATCAAATTGATGGTGAAATCAG
CACAATAGAAATTACCTTGGAAGAAAATGCCGAAACCAAAATGAACATTC
GAAAGATCATCGATTGTCGACCTAATGTTTGGGGGAGACGAGAGGAGTTA
TTCAAACATTATGAAGAACTTTGTCAACGTAAAGTAATCGTACAGCGAGT
TCTGAATGATTTGAAGATGAAGAAGACAGTTCTTGAACAGGAGAAGATAC
GTTGCATGAACAGAAGTTGGTTTCGCAAGACATTGGAGAGACATTGGATG
CTATGAGCCAGATGCGATGTAAATAATCTCCAAAATAGCATCGATCAAAT
TGATGGTGAAATCAGCACAATAGAAATTACCTTGGAAGAAAATGCCGAAA
CCAAAATGAACATTCGAAAGATCATCGATTGTCGACCTAATGTTTGGGGG
AGACGAGAGGAGTTATTCAAACATTATGAAGAACTTTGTCAACGTAAAGT
AATCGTACAGCGAGTTCTGAATGATTTGAAGATGAAGAAGACAGTTCTTG
AACAGGAGAAGATACGTTGCATGAACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042629XLOC_042629Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068306-proteinTCONS_00068306-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068306-exon-scaffold_482-1575043694:392087..392360TCONS_00068306-exon-scaffold_482-1575043694:392087..392360Clytia hemisphaericaexon
TCONS_00068306-exon-scaffold_482-1575043694:391130..391239TCONS_00068306-exon-scaffold_482-1575043694:391130..391239Clytia hemisphaericaexon
TCONS_00068306-exon-scaffold_482-1510915933:392087..392360TCONS_00068306-exon-scaffold_482-1510915933:392087..392360Clytia hemisphaericaexon
TCONS_00068306-exon-scaffold_482-1510915933:391130..391239TCONS_00068306-exon-scaffold_482-1510915933:391130..391239Clytia hemisphaericaexon
TCONS_00068306-exon-scaffold_482-1491911889:392087..392360TCONS_00068306-exon-scaffold_482-1491911889:392087..392360Clytia hemisphaericaexon
TCONS_00068306-exon-scaffold_482-1491911889:391130..391239TCONS_00068306-exon-scaffold_482-1491911889:391130..391239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:391130..392360 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.20273	1.38386	0.229541	0.22457	1.09357	0.216039	1.04257	0.732028	1.02502	0.423218	2.25932	0.945119	1.07863	0.84013	1.72675	2.34722	3.04377	1.55988	2.15506	4.05922	0.588032	0.860465	2.32446	1.26796	1.08831	1.16555	0.277983	0.890013	2.02513	1.83403
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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