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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068305 ID=TCONS_00068305|Name=TCONS_00068305|organism=Clytia hemisphaerica|type=transcript|length=1006bp
ATCAGCTCAAAACACCGACAAAAAAGATGAAAGTTAGCAATTTCTCGAAC
ACTTGGATTTTGTTACTTGATGTTGCTGTTCTTGGTTGTCTTATTGCTTC
ATGGATAGGTCATGAATGGTATGTTTTCCTCGATGAACATGACCTCACAT
TCCCTATTGAAATCACTTTTGGTCTATGGGAAAGATGCTCCATAACATTG
ACATCTACAGCGTGTATCAAGTATGAGTTACACCTTACATGGATGAAAAT
AGTACAATGTTTTATTGTTATATCCAGTGTGTTGACTGTTTTGGGAACTG
TATTTACTGGAGCAGTGTTCATGAAAAGTTGCTACAACAAATGGTCGATG
GCTATCAAACTTCTTGTTGttGGTTTCACAACCGCGGCAGCTGGAATCTT
CTATCACAACCATTCCACACTTCTTCCGATGTCTGTAGACGTCCGTGCGA
TTCAATATGGATGGTCTTTCCACGCTACAATAGCCGCCATCATCATTCTC
ATCGTTTCTTTTATCATACAACTCTTTTCGTTCGTTTATTTGAGAGATAA
AGAAGTTGTGGAAGTTCAATACCAGATGGCGTTGTAAAAAATCTCTTCCT
TTTGAACGAGGCAAACGTTGGCCGGGATAGCGAGGCAGCAATATTGAAAT
GTTGTTATGGAgggttttttagaaaaacaaaaagtcaACTTTAAGGGACT
CTTAAAACTTTAAATGATTGCAACCCAGCGGATGCAAATTACTGTTTTGT
GAATAATGAATGTACTAGTAAGGGCCAGGNACGGATGCAAATTAATGTTT
TGTGAATAATGAATGTACTAGTAAGGGCCAGGGCAAACCAGTACTACATT
TCATCCAAtatgattttccaatgttggatgaaatgtttgatggaaaaact
tgcgttAGACGAAGCAAAAATCAATGCCGAGGCAAACCGAGTCCGGCCAC
GCtggaagataggaaagtagtaAAGCACAAATATTTACCCCCGGGGGGAT
TACTAG Run BLAST on NCBI protein sequence of TCONS_00068305-protein >TCONS_00068305-protein ID=TCONS_00068305-protein|Name=TCONS_00068305-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
QLKTPTKKMKVSNFSNTWILLLDVAVLGCLIASWIGHEWYVFLDEHDLTF
PIEITFGLWERCSITLTSTACIKYELHLTWMKIVQCFIVISSVLTVLGTV
FTGAVFMKSCYNKWSMAIKLLVVGFTTAAAGIFYHNHSTLLPMSVDVRAI
QYGWSFHATIAAIIILIVSFIIQLFSFVYLRDKEVVEVQYQMAL Run BLAST on NCBI transcript from alignment at scaffold_482:357417..358795- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068305 ID=TCONS_00068305|Name=TCONS_00068305|organism=Clytia hemisphaerica|type=transcript|length=1379bp|location=Sequence derived from alignment at scaffold_482:357417..358795- (Clytia hemisphaerica)
ATCAGCTCAAAACACCGACAAAAAAGATGAAAGTTAGCAATTTCTCGAAC
ACTTGGATTTTGTTACTTGATGTTGCTGTTCTTGGTTGTCTTATTGCTTC
ATGGATAGGTCATGAATGGTATGTTTTCCTCGATGAACATGACCTCACAT
TCCCTATTGAAATCACTTTTGGTCTATGGGAAAGATGCTCCATAACATTG
ACATCTACAGCGTGTATCAAGTATGAGTTACACCTTACATGGATGAAAAT
AGTACAATGTTTTATTGTTATATCCAGTGTGTTGACTGTTTTGGGAACTG
TATTTACTGGAGCAGTGTTCATGAAAAGTTGCTACAACAAATGGTCGATG
GCTATCAAACTTCTTGTTGGTGGGTGACTTTGATTTTCATAGCATGAAAA
GATTAAATTCTTTTCAACTTTCCTTTAACTCTTTTCCAGTTTTGGATTAT
AGTCATAAAGTACTCATCTATATATCTCAAGACTCGGTGATAATCCTTAA
GCCACAATAGGAAAACAAATACGAAGGGTTGTAACAATAAATTGCTTACA
TTGAGCGAGGCTACCTAAAAGCTTGTTTATTTCCCAGTATAGATGCGAGT
CGAGTAAAATATTCCGGAGTAGGAGACAAAATTAAAGAATATCACACTCG
TTGAGTATGAATCTCTAGCCAACTCATCATTTACCCCAATAATGTCCCAG
TGGGTCTTATTCTGCCTTTTCCAGTTTTTTGTTTTCTTTTAGTTGGTTTC
ACAACCGCGGCAGCTGGAATCTTCTATCACAACCATTCCACACTTCTTCC
GATGTCTGTAGACGTCCGTGCGATTCAATATGGATGGTCTTTCCACGCTA
CAATAGCCGCCATCATCATTCTCATCGTTTCTTTTATCATACAACTCTTT
TCGTTCGTTTATTTGAGAGATAAAGAAGTTGTGGAAGTTCAATACCAGAT
GGCGTTGTAAAAAATCTCTTCCTTTTGAACGAGGCAAACGTTGGCCGGGA
TAGCGAGGCAGCAATATTGAAATGTTGTTATGGAGGGTTTTTTAGAAAAA
CAAAAAGTCAACTTTAAGGGACTCTTAAAACTTTAAATGATTGCAACCCA
GCGGATGCAAATTACTGTTTTGTGAATAATGAATGTACTAGTAAGGGCCA
GGNACGGATGCAAATTAATGTTTTGTGAATAATGAATGTACTAGTAAGGG
CCAGGGCAAACCAGTACTACATTTCATCCAATATGATTTTCCAATGTTGG
ATGAAATGTTTGATGGAAAAACTTGCGTTAGACGAAGCAAAAATCAATGC
CGAGGCAAACCGAGTCCGGCCACGCTGGAAGATAGGAAAGTAGTAAAGCA
CAAATATTTACCCCCGGGGGGATTACTAG Coding sequence (CDS) from alignment at scaffold_482:357417..358795- >TCONS_00068305 ID=TCONS_00068305|Name=TCONS_00068305|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_482:357417..358795- (Clytia hemisphaerica)
TTGGTTTCACAACCGCGGCAGCTGGAATCTTCTATCACAACCATTCCACA
CTTCTTCCGATGTCTGTAGACGTCCGTGCGATTCAATATGGATGGTCTTT
CCACGCTACAATAGCCGCCATCATCATTCTCATCGTTTCTTTTATCATAC
AACTCTTTTCGTTCGTTTATTTGAGAGATAAAGAAGTTGTGGAAGTTCAA
TACCAGATGGCGTTGTAACAGCTCAAAACACCGACAAAAAAGATGAAAGT
TAGCAATTTCTCGAACACTTGGATTTTGTTACTTGATGTTGCTGTTCTTG
GTTGTCTTATTGCTTCATGGATAGGTCATGAATGGTATGTTTTCCTCGAT
GAACATGACCTCACATTCCCTATTGAAATCACTTTTGGTCTATGGGAAAG
ATGCTCCATAACATTGACATCTACAGCGTGTATCAAGTATGAGTTACACC
TTACATGGATGAAAATAGTACAATGTTTTATTGTTATATCCAGTGTGTTG
ACTGTTTTGGGAACTGTATTTACTGGAGCAGTGTTCATGAAAAGTTGCTA
CAACAAATGGTCGATGGCTATCAAACTTCTTGTTGTTGGTTTCACAACCG
CGGCAGCTGGAATCTTCTATCACAACCATTCCACACTTCTTCCGATGTCT
GTAGACGTCCGTGCGATTCAATATGGATGGTCTTTCCACGCTACAATAGC
CGCCATCATCATTCTCATCGTTTCTTTTATCATACAACTCTTTTCGTTCG
TTTATTTGAGAGATAAAGAAGTTGTGGAAGTTCAATACCAGATGGCGTTG
TAACAGCTCAAAACACCGACAAAAAAGATGAAAGTTAGCAATTTCTCGAA
CACTTGGATTTTGTTACTTGATGTTGCTGTTCTTGGTTGTCTTATTGCTT
CATGGATAGGTCATGAATGGTATGTTTTCCTCGATGAACATGACCTCACA
TTCCCTATTGAAATCACTTTTGGTCTATGGGAAAGATGCTCCATAACATT
GACATCTACAGCGTGTATCAAGTATGAGTTACACCTTACATGGATGAAAA
TAGTACAATGTTTTATTGTTATATCCAGTGTGTTGACTGTTTTGGGAACT
GTATTTACTGGAGCAGTGTTCATGAAAAGTTGCTACAACAAATGGTCGAT
GGCTATCAAACTTCTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068305-exon-scaffold_482-1575043694:358427..358795 | TCONS_00068305-exon-scaffold_482-1575043694:358427..358795 | Clytia hemisphaerica | exon |
| TCONS_00068305-exon-scaffold_482-1575043694:357417..358053 | TCONS_00068305-exon-scaffold_482-1575043694:357417..358053 | Clytia hemisphaerica | exon |
| TCONS_00068305-exon-scaffold_482-1510915933:358427..358795 | TCONS_00068305-exon-scaffold_482-1510915933:358427..358795 | Clytia hemisphaerica | exon |
| TCONS_00068305-exon-scaffold_482-1510915933:357417..358053 | TCONS_00068305-exon-scaffold_482-1510915933:357417..358053 | Clytia hemisphaerica | exon |
| TCONS_00068305-exon-scaffold_482-1491911889:358427..358795 | TCONS_00068305-exon-scaffold_482-1491911889:358427..358795 | Clytia hemisphaerica | exon |
| TCONS_00068305-exon-scaffold_482-1491911889:357417..358053 | TCONS_00068305-exon-scaffold_482-1491911889:357417..358053 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:357417..358795 - |
Blast
The following BLAST results are available for this feature:
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