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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068304 ID=TCONS_00068304|Name=TCONS_00068304|organism=Clytia hemisphaerica|type=transcript|length=871bp
taaaaaaagaagaaattttcaattatctTCTTTGGAAATGGTATATATGG
TATACAACAAATATTGACTTTGACGAAATTGTCTCTGACCAAACACGACA
TTCAACACAAACTAAACTTCTTTACATCAATGTAATGCGAATCACTGGAA
ATTTTCGTTATTTCTCTTGGCAGAAGCATACAAAAGCCTGGCGAAAAGGa
aacattgaaatattctttgaaaattcaTCTAACCTAACCTTTCGTAAAGT
TTCTTTCCGATTGTTGGTTTCTGACGACCTGAAAATGGCGAAGACACATC
AAATCGTTGAAACAGTATTTTATTCTTTAATGATTCTGATCGGTGGGATC
GGGAATATCTTGGTCATCATTTTCTTTGCactcaaatcaaaaaagaaaga
gttgaaTTCGTATCATTTCATTATTGCTCAATTAGCTGTGTCTGATTTGA
TTGTCTGTGTTGGAGTCcctgtagtggaaattcaatacaCCTTTGCTACA
AGTTATGCCAACGAGCTTATGTGTAAAGCAATTTCCGTCCCTTTTGTTGG
AGTTACTGTTTCTTGTTGGATTCTCTGTGGAATGTCTTTTGACCGGTATC
GAAGAATCAAAGATCCGATGGCTGAGAACTTTGGTAAAGTCAGAATTACT
TTGGCTTGCTTAATTGTTTGGTCTATTTTCTTCTTGGCAGCCATCCCTCA
ATTTATAAAGACAGTATATTATGCTGAAACTCAAGAATGCTATTTCGACG
CCTTTGAAAGCTTCTCGTCTTCGTTTGCTATTGGTTATTACGCATTCTAT
TTCATTGCAAATGTTGTTGTGCCTCTTAGCATTTTTCTGGTTCTCTATTT
CAAATCCCGAAATCGCCTTTC Run BLAST on NCBI protein sequence of TCONS_00068304-protein >TCONS_00068304-protein ID=TCONS_00068304-protein|Name=TCONS_00068304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
KKEEIFNYLLWKWYIWYTTNIDFDEIVSDQTRHSTQTKLLYINVMRITGN
FRYFSWQKHTKAWRKGNIEIFFENSSNLTFRKVSFRLLVSDDLKMAKTHQ
IVETVFYSLMILIGGIGNILVIIFFALKSKKKELNSYHFIIAQLAVSDLI
VCVGVPVVEIQYTFATSYANELMCKAISVPFVGVTVSCWILCGMSFDRYR
RIKDPMAENFGKVRITLACLIVWSIFFLAAIPQFIKTVYYAETQECYFDA
FESFSSSFAIGYYAFYFIANVVVPLSIFLVLYFKSRNRL Run BLAST on NCBI transcript from alignment at scaffold_482:351353..352503- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068304 ID=TCONS_00068304|Name=TCONS_00068304|organism=Clytia hemisphaerica|type=transcript|length=1151bp|location=Sequence derived from alignment at scaffold_482:351353..352503- (Clytia hemisphaerica)
TAAAAAAAGAAGAAATTTTCAATTATCTTCTTTGGAAATGGTATATATGG
TATACAACAAATATTGACTTTGACGAAATTGTCTCTGACCAAACACGACA
TTCAACACAAACTAAACTTCTTTACATCAATGTAATGCGAATCACTGGAA
ATTTTCGTTATTTCTCTTGGCAGAAGCATACAAAAGCCTGGCGAAAAGGA
AACATTGAAATATTCTTTGAAAATTCATCTAACCTAACCTTTCGTAAAGT
TTCTTTCCGGTAAGCACTGTTGATTCAAAGTTATTTTAAAGTCACTTTGT
TAAGCTCAGACTCAGAGCACTCAAAGATTTTTGTGTTCTTTTCGAATCTT
CTTGACTTGAACAAGTCTTCTTGTCTCTTAATTTAACAATATTATAAATG
CTCGTCTCCATATTTCGAAATTGTCGGAAAAGTCTGTGTTCCTCGTGCGT
GTTCGAGTTATGGAGACTCCAACGTGGTCATTTACCCGAACAATATTGTT
TTAAATCTTATATCTCTTATTTCCTATTTTTTCTTGTAGATTGTTGGTTT
CTGACGACCTGAAAATGGCGAAGACACATCAAATCGTTGAAACAGTATTT
TATTCTTTAATGATTCTGATCGGTGGGATCGGGAATATCTTGGTCATCAT
TTTCTTTGCACTCAAATCAAAAAAGAAAGAGTTGAATTCGTATCATTTCA
TTATTGCTCAATTAGCTGTGTCTGATTTGATTGTCTGTGTTGGAGTCCCT
GTAGTGGAAATTCAATACACCTTTGCTACAAGTTATGCCAACGAGCTTAT
GTGTAAAGCAATTTCCGTCCCTTTTGTTGGAGTTACTGTTTCTTGTTGGA
TTCTCTGTGGAATGTCTTTTGACCGGTATCGAAGAATCAAAGATCCGATG
GCTGAGAACTTTGGTAAAGTCAGAATTACTTTGGCTTGCTTAATTGTTTG
GTCTATTTTCTTCTTGGCAGCCATCCCTCAATTTATAAAGACAGTATATT
ATGCTGAAACTCAAGAATGCTATTTCGACGCCTTTGAAAGCTTCTCGTCT
TCGTTTGCTATTGGTTATTACGCATTCTATTTCATTGCAAATGTTGTTGT
GCCTCTTAGCATTTTTCTGGTTCTCTATTTCAAATCCCGAAATCGCCTTT
C Coding sequence (CDS) from alignment at scaffold_482:351353..352503- >TCONS_00068304 ID=TCONS_00068304|Name=TCONS_00068304|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_482:351353..352503- (Clytia hemisphaerica)
ATTGTTGGTTTCTGACGACCTGAAAATGGCGAAGACACATCAAATCGTTG
AAACAGTATTTTATTCTTTAATGATTCTGATCGGTGGGATCGGGAATATC
TTGGTCATCATTTTCTTTGCACTCAAATCAAAAAAGAAAGAGTTGAATTC
GTATCATTTCATTATTGCTCAATTAGCTGTGTCTGATTTGATTGTCTGTG
TTGGAGTCCCTGTAGTGGAAATTCAATACACCTTTGCTACAAGTTATGCC
AACGAGCTTATGTGTAAAGCAATTTCCGTCCCTTTTGTTGGAGTTACTGT
TTCTTGTTGGATTCTCTGTGGAATGTCTTTTGACCGGTATCGAAGAATCA
AAGATCCGATGGCTGAGAACTTTGGTAAAGTCAGAATTACTTTGGCTTGC
TTAATTGTTTGGTCTATTTTCTTCTTGGCAGCCATCCCTCAATTTATAAA
GACAGTATATTATGCTGAAACTCAAGAATGCTATTTCGACGCCTTTGAAA
GCTTCTCGTCTTCGTTTGCTATTGGTTATTACGCATTCTATTTCATTGCA
AATGTTGTTGTGCCTCTTAGCATTTTTCTGGTTCTCTATTTCAAATCCCG
AAATCGCCTTAAAAAAGAAGAAATTTTCAATTATCTTCTTTGGAAATGGT
ATATATGGTATACAACAAATATTGACTTTGACGAAATTGTCTCTGACCAA
ACACGACATTCAACACAAACTAAACTTCTTTACATCAATGTAATGCGAAT
CACTGGAAATTTTCGTTATTTCTCTTGGCAGAAGCATACAAAAGCCTGGC
GAAAAGGAAACATTGAAATATTCTTTGAAAATTCATCTAACCTAACCTTT
CGTAAAGTTTCTTTCCGATTGTTGGTTTCTGACGACCTGAAAATGGCGAA
GACACATCAAATCGTTGAAACAGTATTTTATTCTTTAATGATTCTGATCG
GTGGGATCGGGAATATCTTGGTCATCATTTTCTTTGCACTCAAATCAAAA
AAGAAAGAGTTGAATTCGTATCATTTCATTATTGCTCAATTAGCTGTGTC
TGATTTGATTGTCTGTGTTGGAGTCCCTGTAGTGGAAATTCAATACACCT
TTGCTACAAGTTATGCCAACGAGCTTATGTGTAAAGCAATTTCCGTCCCT
TTTGTTGGAGTTACTGTTTCTTGTTGGATTCTCTGTGGAATGTCTTTTGA
CCGGTATCGAAGAATCAAAGATCCGATGGCTGAGAACTTTGGTAAAGTCA
GAATTACTTTGGCTTGCTTAATTGTTTGGTCTATTTTCTTCTTGGCAGCC
ATCCCTCAATTTATAAAGACAGTATATTATGCTGAAACTCAAGAATGCTA
TTTCGACGCCTTTGAAAGCTTCTCGTCTTCGTTTGCTATTGGTTATTACG
CATTCTATTTCATTGCAAATGTTGTTGTGCCTCTTAGCATTTTTCTGGTT
CTCTATTTCAAATCCCGAAATCGCCTTAAAAAAGAAGAAATTTTCAATTA
TCTTCTTTGGAAATGGTATATATGGTATACAACAAATATTGACTTTGACG
AAATTGTCTCTGACCAAACACGACATTCAACACAAACTAAACTTCTTTAC
ATCAATGTAATGCGAATCACTGGAAATTTTCGTTATTTCTCTTGGCAGAA
GCATACAAAAGCCTGGCGAAAAGGAAACATTGAAATATTCTTTGAAAATT
CATCTAACCTAACCTTTCGTAAAGTTTCTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068304-exon-scaffold_482-1575043694:352245..352503 | TCONS_00068304-exon-scaffold_482-1575043694:352245..352503 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1575043694:351353..351964 | TCONS_00068304-exon-scaffold_482-1575043694:351353..351964 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1510915933:352245..352503 | TCONS_00068304-exon-scaffold_482-1510915933:352245..352503 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1510915933:351353..351964 | TCONS_00068304-exon-scaffold_482-1510915933:351353..351964 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1491911889:352245..352503 | TCONS_00068304-exon-scaffold_482-1491911889:352245..352503 | Clytia hemisphaerica | exon |
| TCONS_00068304-exon-scaffold_482-1491911889:351353..351964 | TCONS_00068304-exon-scaffold_482-1491911889:351353..351964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:351353..352503 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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