TCONS_00068303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068303
Unique NameTCONS_00068303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2153

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068303 ID=TCONS_00068303|Name=TCONS_00068303|organism=Clytia hemisphaerica|type=transcript|length=2153bp
ctacccctcCCCttgggctaatagggttaatcGGTAAGATGGATTTTGGA
TGCACGAGGGTAGAaagtttatatattatatatatttcaaGTAAAGATGA
TGTATTACATTTAAGTATTATTCTAACAAGAAAATAACTCACTATACACA
ACTTTGACCTTCAAGAATCCTTTAGCAAAGTGACAGAACAGGGGAGTTGT
CAGGGGAGGGTCGTCCAGGAATTATTAAGGGTTGACTGTCCGGGGTTGAT
TGTACTAGCATCCATTAGCAAATAATGAAGCTATACCAAGCTTCAGATGA
AAGtgctataataataatattaattTTTCCTTGCCGGTTATTTGTCGTGG
CTATTGCTTTCAACCTCTCGTagctacttttgaaaaaaaaatcaatcttt
CATattatgattttcatttttgagaACTTATTATAAGGTTATTATTGcga
attttgtttattttttagtttttattgtcTGCCGCTTAAAAATCGGGTGA
AGACTCTGAATCATATTACTAATATCTCCAATTCGGATGATAATTTTTCT
CAGCTAACCTCGGGTCTTTGGTATTACTTACTAGCTAggtataaaaatat
ttcttaaaagttTTAATTGCAGTAAAAGCACCAACCGCAAAGACACCAGA
CATTAAAATAGTCCTTGATGATATGTTATTTCGTGAAAATGAGTACAATC
CAGATTTTTcgttcaaaatcattttcaggTATTTTAAAGCTGCCACTTTC
CACACATCTCCTCCTTTGTAAGTTGAATATTCCTCATCAAGGTCTTCAAT
CGCGTCAATAAGACTTTGGATATCTTCTTTCGGCTGATTCTTCATATCAG
ATAAATATCTCATGTAGGTTCTGATACCAAAGACGATACAACCTGTCTTT
GGCAACTTTCTTAGAGTATGATATTCACATCTTAAGAATAGTTTTCTTCC
TGTTTCTTCACCTTCAAAGGGAATTCGTGAACCACCTTGAGTATGTAATT
TCTTGTTAGGAtgagaaaacaaatcaaatgtATCGTCAAGCGAGCTGTAT
ATTCCCCAATTAGCTCTCCACAGTGGATTCTCAGCTTTCAATCTCAAGAA
TAAGGAATCAACTTTATCTTTCAAATGCCTTAAGTAAGGCTTCACAGGTT
CATGTATCATTTGCATTGGTTTGTTGAATTTCTCTTTCAGTGACCAATCA
GAGGGAAAGCATAAATTTCCCGCTGTCAAAACGTAACCTGATTGGTTCTC
CTCATACTCCATGATTATCCAATCGTCTTGAGTCAACCTTCCTGCTCTTA
ACATTACATCTTCCTCCTCCTCATCATCAGGGTCGATCGGGATCAATTCA
CCAGTGACACGATTCAAGATATGGTCTCCTTGTTTCTCAAATATGTCCGG
AAAACGTTCCAAAACATGGTCGGTGAGCAGCTCATAGAATTCCTTTTTAC
AATGGTCTGTTGTTGGGTTATTAACCCTTGAAATGAAGATATCATCCATG
TTGGACCGATATAATTCCTGCTTTACAGCCATTTGTTTTGGCGAAGCCTA
CAAGCAGAGCAACCAAAATGGTTAAAGTTCGAACAACAACATCTAAACAT
AACACACCAAAAGTTgtattcaaaaaataatcattGAAATGTCGAGTCCA
TTTACTGACGGTGATGACTAAAACTCCACAGACGGCAAACGTCAATGCCG
TCAATAACAAAATACGACGTCGTGTCACTAGACGGTAATATTTCAAACAA
TATCGCATCTCCAGAAACCTGTCACCAGTTATGAATACAATCTGTAGATT
TGACATGATGCCGAATAAATAAAAGAAGATTGACAGAAGCTCGTAAACTG
TTTTCTGATGTTTAAGCTCTTCACGAAAGATGATAATAAAAATGATAATT
GCTGGTTGTAAAGCGTCAATCAAGGATAACAACTGGATCAAATAAAATCG
GTGACTATGCAGTTTCGCTTTTTGGATCATGAAGATCACGAATAAGTTTA
GTATAACAATTATAATTGCAGTGTAACAGTCCCATCTAACGTGTGCCATG
ACCAGTAGAACTTCTCAATCGAAAATGTGATAAATTTCTTTCACTTTCAA
ACCATGAAACATGTTTGTTGAAACGTAATATCATTATAAGGTTATCAAGA
aac
Run BLAST on NCBI

transcript from alignment at scaffold_482:336981..340456-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068303 ID=TCONS_00068303|Name=TCONS_00068303|organism=Clytia hemisphaerica|type=transcript|length=3476bp|location=Sequence derived from alignment at scaffold_482:336981..340456- (Clytia hemisphaerica)
CTACCCCTCCCCTTGGGCTAATAGGGTTAATCGGTAAGATGGATTTTGGA
TGCACGAGGGTAGAAAGTTTATATATTATATATATTTCAAGTAAAGATGA
TGTATTACATTTAAGTATTATTCTAACAAGAAAATAACTCACTATACACA
ACTTTGACCTTCAAGAATCCTTTAGCAAAGTGACAGAACAGGGGAGTTGT
CAGGGGAGGGTCGTCCAGGAATTATTAAGGGTTGACTGTCCGGGGTTGAT
TGTACTAGCATCCATTAGCAAATAATGAAGCTATACCAAGCTTCAGATGA
AAGTGCTATAATAATAATATTAATTTTTCCTTGCCGGTTATTTGTCGTGG
CTATTGCTTTCAACCTCTCGTAGCTACTTTTGAAAAAAAAATCAATCTTT
CATATTATGATTTTCATTTTTGAGAACTTATTATAAGGTTATTATTGCGA
ATTTTGTTTATTTTTTAGTTTTTATTGTCTGCCGCTTAAAAATCGGGTGA
AGACTCTGAATCATATTACTAATATCTCCAATTCGGATGATAATTTTTCT
CAGCTAACCTCGGGTCTTTGGTATTACTTACTAGCTAGGTATAAAAATAT
TTCTTAAAAGTTTTAATTGCAGTAAAAGCACCAACCGCAAAGACACCAGA
CATTAAAATAGTCCTTGATGATATGTTATTTCGTGAAAATGAGTACAATC
CAGATTTTTCGTTCAAAATCATTTTCAGGTATTTTAAAGCTGCCACTTTC
CACACATCTCCTCCTTTGTAAGTTGAATATTCCTCATCAAGGTCTTCAAT
CGCGTCAATAAGACTTTGGATATCTTCTTTCGGCTGATTCTTCATATCAG
ATAAATATCTCATGTAGGTTCTGATACCAAAGACGATACAACCTGTCTTT
GGCAACTTTCTTAGAGTATGATATTCACATCTTAAGAATAGTTTTCTTCC
TGTTTCTTCACCTTCAAAGGGAATTCGTGAACCACCTTGAGTATGTAATT
TCTTGTTAGGATGAGAAAACAAATCAAATGTATCGTCAAGCGAGCTGTAT
ATTCCCCAATTAGCTCTCCACAGTGGATTCTCAGCTTTCAATCTCAAGAA
TAAGGAATCAACTTTATCTTTCAAATGCCTTAAGTAAGGCTTCACAGGTT
CATGTATCATTTGCATTGGTTTGTTGAATTTCTCTTTCAGTGACCAATCA
GAGGGAAAGCATAAATTTCCCGCTGTCAAAACGTAACCTGATTGGTTCTC
CTCATACTCCATGATTATCCAATCGTCTTGAGTCAACCTTCCTGCTCTTA
ACATTACATCTTCCTCCTCCTCATCATCAGGGTCGATCGGGATCAATTCA
CCAGTGACACGATTCAAGATATGGTCTCCTTGTTTCTCAAATATGTCCGG
AAAACGTTCCAAAACATGGTCGGTGAGCAGCTCATAGAATTCCTTTTTAC
AATGGTCTGTTGTTGGGTTATTAACCCTTGAAATGAAGATATCATCCATG
TTGGACCGATATAATTCCTGCTTTACAGCCATTTGTTTTGGGTAGGTTGC
ATCAATTCGAACCCAATCATACAAATCCAAGTTCTTCACGTGCATTTTCA
TTTTTCCAGGTATTTCATCTTTGAATATGAAAATACACGGATCTTCATCC
CATATGATATCACGAGCCTCCATAGCTTTAGTAAGTTAAACAGCAATATC
TGCATACAAAAAAAAACTTTTATACATCTTTTTTGTGATGTCTAAGCTTG
TATTAACAAGAAACTTGGTTTTGTTATCATTAAGTCGAATTGCATGATCT
CTATGCAAGACCAGATTGAAATTTGATATTATATTTCAGATTTTTTACAT
ACTCTCGATCGAAATGTTTTTATAAAACGTAGGATTACGCTATTGGGTAA
GATTAGGTAATATTCAAGGGCAATATTTAATTTTTCGTTTCTTAGGACGT
TTCAATGAAGAATTTCAACTAAAGTATCTCACTTCTTTTTATAAGAACCA
GTAAAGATTTGCTGAAGCTCCACTGTTCTTATTCTTTTGGTACTTTGAGC
CTCAAATTGTTCTTATCCTGTTCTTATATATAGGGTAATTAAAGTGATTT
AGGTTTTTACCCAATTTTTACTATTTGGTTTCCTAAATTGCATCAAAAGG
AGTAATTTCTGAGCCTCATTGTCCTTATAAAATTGTTCTTATAAACGANC
TTTGAGCCTCAAATTGTTCTTATCCTGTTCTTATATATAGGGTAATTAAA
GTGATTTAGGTTTTTACCCAATTTTTACTATTTGGTTTCCTGAATTGCAT
CAAAAGGAGTAATTTCTGAGCCTCATTGTTCTTATAAAAGGAAAAGCGTC
TATTCAACTATTGGAAAAAATGTAGTTTAGATTTAACTGTATGAAAATAT
TATTTTCAAAACATTTTCCTAAAAATTTGGATTTTACAAAAAACCTTGAC
CATCGGCCTTCTTGAGCTGCTACTAACAAGAAATAAATAATGTCATTAGT
TTTTAGCACATGCACTTTTAATCAGCAGGATTCAAAGGGTTTATTCTATT
ATGAGTACCAAATAAAGTTTTTACAGCCTTTCGAAGCTTGGTTTGTGTCG
CAAGGTAAACAAAAGGGTTCGAAACCAGATAAATAATTCGAAATATGGCG
TCATAAATTCGTAATTGGTCATTAAATACAATCATTATAATGCCAGTTAT
TATTTGAGGTGTCAGAAATATGACTGTCCAGATATTAAGAATCGTAACAT
CTTTAATACTCATTTTCAGTTCAATAAGTTTCGACATTCTTTCTTGTTGG
AAGCCATCATAAATAGTTCTATTTCTTAACTGAGCGATATTCCTTTTTCT
GATCCTTTTAACAGCGAAGCCTACAAGCAGAGCAACCAAAATGGTTAAAG
TTCGAACAACAACATCTAAACATAACACACCAAAAGTTGTATTCAAAAAA
TAATCATTGAAATGTCGAGTCCATTTACTGACGGTGATGACTAAAACTCC
ACAGACGGCAAACGTCAATGCCGTCAATAACAAAATACGACGTCGTGTCA
CTAGACGGTAATATTTCAAACAATATCGCATCTCCAGAAACCTGTCACCA
GTTATGAATACAATCTGTAGATTTGACATGATGCCGAATAAATAAAAGAA
GATTGACAGAAGCTCGTAAACTGTTTTCTGATGTTTAAGCTCTTCACGAA
AGATGATAATAAAAATGATAATTGCTGGTTGTAAAGCGTCAATCAAGGAT
AACAACTGGATCAAATAAAATCGGTGACTATGCAGTTTCGCTTTTTGGAT
CATGAAGATCACGAATAAGTTTAGTATAACAATTATAATTGCAGTGTAAC
AGTCCCATCTAACGTGTGCCATGACCAGTAGAACTTCTCAATCGAAAATG
TGATAAATTTCTTTCACTTTCAAACCATGAAACATGTTTGTTGAAACGTA
ATATCATTATAAGGTTATCAAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042626XLOC_042626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068303-exon-scaffold_482-1575043694:338916..340456TCONS_00068303-exon-scaffold_482-1575043694:338916..340456Clytia hemisphaericaexon
TCONS_00068303-exon-scaffold_482-1575043694:336981..337592TCONS_00068303-exon-scaffold_482-1575043694:336981..337592Clytia hemisphaericaexon
TCONS_00068303-exon-scaffold_482-1510915933:338916..340456TCONS_00068303-exon-scaffold_482-1510915933:338916..340456Clytia hemisphaericaexon
TCONS_00068303-exon-scaffold_482-1510915933:336981..337592TCONS_00068303-exon-scaffold_482-1510915933:336981..337592Clytia hemisphaericaexon
TCONS_00068303-exon-scaffold_482-1491911889:338916..340456TCONS_00068303-exon-scaffold_482-1491911889:338916..340456Clytia hemisphaericaexon
TCONS_00068303-exon-scaffold_482-1491911889:336981..337592TCONS_00068303-exon-scaffold_482-1491911889:336981..337592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:336981..340456 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0224422	0	0	0	0	0.162235	0	0.00479408	1.17538e-09	0.592464	0	0.150173	0.224154	0	0	0	0	0.964475	0	0	0	0.226136	0	0.725263	7.66421e-08	0	0	0	0.0622098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top