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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068299 ID=TCONS_00068299|Name=TCONS_00068299|organism=Clytia hemisphaerica|type=transcript|length=1778bp
GTTTTGTTAGCTCAAACTTTTTGCAACATCTTTCTTCGTTCATATTTTGT
TGTATCAGTGTGACGATTATCATTGGAGAGAGAgaagaaataacaaaaaa
ggaaaataatggAGACGGATAAAGATATTGAGCTCAAGAAGATTGGCCAA
GAAGTCCTCAAGGAGATGACCAAGAAATGGAAAACCTTCATCCAGAAGAC
CGAAGCCAAATACAAAAGTCATATGTGGGCATCACGCTACTGgaacaaaa
tcaataaaatcctTCTGTCAGCTATGGCAATCTTTGGAGCTGTTGCAACT
CTGTTGGCATTACTACAAACGGTGACTATATTCATCATTGCTGGGTTAGT
GGCAACGCTAACATTCCTAGTTTGTCTGTACGCTGTGTTACAACCAGCTG
AGAGAAAACACAAACATATCAGATCTGCCAAAGAGTTCCAAAACCTCATG
ATGCGAATGGTAAGATGTAAAACAGGAATCGAATTTGAACAACTCTGGCA
TGATATGAACCGATGCATCTTCGAAGAACCTATTCTGAAGAAACGGCATG
TATATCCAATATCTACCGATACTGAACAGATCCATTGGACAATGTCTCAA
GAGTTGTCTAAGTTTATCGAGTTGAAGAAGGAGGAAGCGAAACGGATGGT
AAAGCAGTATGCTAACAGGTGTGTTGGTACAACCTCGGATGTGGTCAATA
TTGAACCCTGGCAATTTGGGAACAACCAGAATCATCGAAACGGTGCATAT
GCAGGGAATTCGATGTACCAGTCATCCTATAATACATACCCTGGATCAAA
TGCTGTGGTAAGTTATGGAGGAGCAGTCTCTGGTGGCCATCAATCTTCCA
GAGATTACCAGTTCACCAATGGTTTTGATCACCATAAAGCAATCGTAACC
ACTACAGCCACTGGTAGTCGAGATGATGAATTTGAAGTTCTGTTTGCTCA
GAAATCTCACCAAGAAGTCTGGGAGGATGGGAAGAGAAAGAAAAGACAGA
TCTTCGAACAATTCAGAAGAAGCAAGTCTATGAAATGAACTGTTGTATTC
TGGAATATGGATaaagaattgaaattaaatGGCGGAGAAGTATCAAGACT
TCCATTAGACAAAAGAACCCAAAATTGATTTTCCAACTTGAAGGTTATAC
AATTGGAAAGAGTAGTCGGAATTGATGACTAAAGTTCTATTTCTAAAATG
GCAACGAAAGAGACAAGAAATATAGGTTAAATGaacaataatttttattt
tgtatttttataaatttttgttgggtttgaatgtttttgttatTTATAAA
CTTGTTGTCTCAAAGTAGTATAGACATTGTCATTGGGGTAACACGCTCGC
TTACACACCGCTGGGAAAAAGGAATGATATAATTTATGTTGCGTTAGCCT
TAGCTTGTTTctttattaaagaaattaatgtgtgttataaaaagtataaa
ttctgatagaaaataaagaaatgaatTCTAAGAATAAATTGGAAATTCTT
ATTTACagcaatcaaaaaattttaattcgTTAAAAACATGGTATACGTTA
CCAGAATATATTTTTCGTTTTAATATAATATGTGGAATAAAATTGTATGC
ATTTTTATGTGTAATATCCCTATATGTATCCCttctcacagccccactgg
aaatccttcccactggaaaaattggccaaaatatggTCCCCGCAGTGGAA
AATCATCCTCCAGCCTTTGTcctcgctgaaaataatcaattaaaccaatc
ctcactgcaaaatacttACTATTTTTTC Run BLAST on NCBI transcript from alignment at scaffold_482:219214..221388- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068299 ID=TCONS_00068299|Name=TCONS_00068299|organism=Clytia hemisphaerica|type=transcript|length=2175bp|location=Sequence derived from alignment at scaffold_482:219214..221388- (Clytia hemisphaerica)
GTTTTGTTAGCTCAAACTTTTTGCAACATCTTTCTTCGTTCATATTTTGT
TGTATCAGTGTGACGATTATCATTGGAGAGAGAGAAGAAATAACAAAAAA
GGAAAATAATGGAGGTGAGATTTGTTACTTCAAGGTGGACAAAAAACTTT
CACAAACTAAGAAAGATGGACCAGTAATTCTAGCTAGTTTGATTCCTATA
ACTGGTTTTAATCGTGCGATCCTAGTTGTGACTGGTTAAATAAGCTACGT
TCTGTCGCAGGGTCCTACCTGACAGAGGGCGATAGAAATTGAACTTCAAG
AAATTGGAGGATTATTTGACTGAAAATTTCCGCCTTCGTAACCTTAAATA
AATGACTGCATCTTGGTATTTCTAATCTTATTGATGATATGGTAGATTGG
ATTTGTCTGAGTCCATCATTAAAAAAATGGATGTATTCTAAAATCTTCGG
TAACAGCTCAATCGTAATATCCTTTAAATGTCTCAATTATTTCATTCTCA
ACTTGTTTTAGACGGATAAAGATATTGAGCTCAAGAAGATTGGCCAAGAA
GTCCTCAAGGAGATGACCAAGAAATGGAAAACCTTCATCCAGAAGACCGA
AGCCAAATACAAAAGTCATATGTGGGCATCACGCTACTGGAACAAAATCA
ATAAAATCCTTCTGTCAGCTATGGCAATCTTTGGAGCTGTTGCAACTCTG
TTGGCATTACTACAAACGGTGACTATATTCATCATTGCTGGGTTAGTGGC
AACGCTAACATTCCTAGTTTGTCTGTACGCTGTGTTACAACCAGCTGAGA
GAAAACACAAACATATCAGATCTGCCAAAGAGTTCCAAAACCTCATGATG
CGAATGGTAAGATGTAAAACAGGAATCGAATTTGAACAACTCTGGCATGA
TATGAACCGATGCATCTTCGAAGAACCTATTCTGAAGAAACGGCATGTAT
ATCCAATATCTACCGATACTGAACAGATCCATTGGACAATGTCTCAAGAG
TTGTCTAAGTTTATCGAGTTGAAGAAGGAGGAAGCGAAACGGATGGTAAA
GCAGTATGCTAACAGGTGTGTTGGTACAACCTCGGATGTGGTCAATATTG
AACCCTGGCAATTTGGGAACAACCAGAATCATCGAAACGGTGCATATGCA
GGGAATTCGATGTACCAGTCATCCTATAATACATACCCTGGATCAAATGC
TGTGGTAAGTTATGGAGGAGCAGTCTCTGGTGGCCATCAATCTTCCAGAG
ATTACCAGTTCACCAATGGTTTTGATCACCATAAAGCAATCGTAACCACT
ACAGCCACTGGTAGTCGAGATGATGAATTTGAAGTTCTGTTTGCTCAGAA
ATCTCACCAAGAAGTCTGGGAGGATGGGAAGAGAAAGAAAAGACAGATCT
TCGAACAATTCAGAAGAAGCAAGTCTATGAAATGAACTGTTGTATTCTGG
AATATGGATAAAGAATTGAAATTAAATGGCGGAGAAGTATCAAGACTTCC
ATTAGACAAAAGAACCCAAAATTGATTTTCCAACTTGAAGGTTATACAAT
TGGAAAGAGTAGTCGGAATTGATGACTAAAGTTCTATTTCTAAAATGGCA
ACGAAAGAGACAAGAAATATAGGTTAAATGAACAATAATTTTTATTTTGT
ATTTTTATAAATTTTTGTTGGGTTTGAATGTTTTTGTTATTTATAAACTT
GTTGTCTCAAAGTAGTATAGACATTGTCATTGGGGTAACACGCTCGCTTA
CACACCGCTGGGAAAAAGGAATGATATAATTTATGTTGCGTTAGCCTTAG
CTTGTTTCTTTATTAAAGAAATTAATGTGTGTTATAAAAAGTATAAATTC
TGATAGAAAATAAAGAAATGAATTCTAAGAATAAATTGGAAATTCTTATT
TACAGCAATCAAAAAATTTTAATTCGTTAAAAACATGGTATACGTTACCA
GAATATATTTTTCGTTTTAATATAATATGTGGAATAAAATTGTATGCATT
TTTATGTGTAATATCCCTATATGTATCCCTTCTCACAGCCCCACTGGAAA
TCCTTCCCACTGGAAAAATTGGCCAAAATATGGTCCCCGCAGTGGAAAAT
CATCCTCCAGCCTTTGTCCTCGCTGAAAATAATCAATTAAACCAATCCTC
ACTGCAAAATACTTACTATTTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068299-exon-scaffold_482-1575043694:221275..221388 | TCONS_00068299-exon-scaffold_482-1575043694:221275..221388 | Clytia hemisphaerica | exon |
| TCONS_00068299-exon-scaffold_482-1575043694:219214..220877 | TCONS_00068299-exon-scaffold_482-1575043694:219214..220877 | Clytia hemisphaerica | exon |
| TCONS_00068299-exon-scaffold_482-1510915933:221275..221388 | TCONS_00068299-exon-scaffold_482-1510915933:221275..221388 | Clytia hemisphaerica | exon |
| TCONS_00068299-exon-scaffold_482-1510915933:219214..220877 | TCONS_00068299-exon-scaffold_482-1510915933:219214..220877 | Clytia hemisphaerica | exon |
| TCONS_00068299-exon-scaffold_482-1491911889:221275..221388 | TCONS_00068299-exon-scaffold_482-1491911889:221275..221388 | Clytia hemisphaerica | exon |
| TCONS_00068299-exon-scaffold_482-1491911889:219214..220877 | TCONS_00068299-exon-scaffold_482-1491911889:219214..220877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:219214..221388 - |
Blast
The following BLAST results are available for this feature:
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