TCONS_00068298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068298
Unique NameTCONS_00068298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068298 ID=TCONS_00068298|Name=TCONS_00068298|organism=Clytia hemisphaerica|type=transcript|length=1724bp
TTTTGTTGTATCAGTGTGACGATTATCATTGGAGAGAGAgaagaaataac
aaaaaaggaaaataatggAGATATTGAGCTCAAGAAGATTGGCCAAGAAG
TCCTCAAGGAGATGACCAAGAAATGGAAAACCTTCATCCAGAAGACCGAA
GCCAAATACAAAAGTCATATGTGGGCATCACGCTACTGgaacaaaatcaa
taaaatcctTCTGTCAGCTATGGCAATCTTTGGAGCTGTTGCAACTCTGT
TGGCATTACTACAAACGGTGACTATATTCATCATTGCTGGGTTAGTGGCA
ACGCTAACATTCCTAGTTTGTCTGTACGCTGTGTTACAACCAGCTGAGAG
AAAACACAAACATATCAGATCTGCCAAAGAGTTCCAAAACCTCATGATGC
GAATGGTAAGATGTAAAACAGGAATCGAATTTGAACAACTCTGGCATGAT
ATGAACCGATGCATCTTCGAAGAACCTATTCTGAAGAAACGGCATGTATA
TCCAATATCTACCGATACTGAACAGATCCATTGGACAATGTCTCAAGAGT
TGTCTAAGTTTATCGAGTTGAAGAAGGAGGAAGCGAAACGGATGGTAAAG
CAGTATGCTAACAGGTGTGTTGGTACAACCTCGGATGTGGTCAATATTGA
ACCCTGGCAATTTGGGAACAACCAGAATCATCGAAACGGTGCATATGCAG
GGAATTCGATGTACCAGTCATCCTATAATACATACCCTGGATCAAATGCT
GTGGTAAGTTATGGAGGAGCAGTCTCTGGTGGCCATCAATCTTCCAGAGA
TTACCAGTTCACCAATGGTTTTGATCACCATAAAGCAATCGTAACCACTA
CAGCCACTGGTAGTCGAGATGATGAATTTGAAGTTCTGTTTGCTCAGAAA
TCTCACCAAGAAGTCTGGGAGGATGGGAAGAGAAAGAAAAGACAGATCTT
CGAACAATTCAGAAGAAGCAAGTCTATGAAATGAACTGTTGTATTCTGGA
ATATGGATaaagaattgaaattaaatGGCGGAGAAGTATCAAGACTTCCA
TTAGACAAAAGAACCCAAAATTGATTTTCCAACTTGAAGGTTATACAATT
GGAAAGAGTAGTCGGAATTGATGACTAAAGTTCTATTTCTAAAATGGCAA
CGAAAGAGACAAGAAATATAGGTTAAATGaacaataatttttattttgta
tttttataaatttttgttgggtttgaatgtttttgttatTTATAAACTTG
TTGTCTCAAAGTAGTATAGACATTGTCATTGGGGTAACACGCTCGCTTAC
ACACCGCTGGGAAAAAGGAATGATATAATTTATGTTGCGTTAGCCTTAGC
TTGTTTctttattaaagaaattaatgtgtgttataaaaagtataaattct
gatagaaaataaagaaatgaatTCTAAGAATAAATTGGAAATTCTTATTT
ACagcaatcaaaaaattttaattcgTTAAAAACATGGTATACGTTACCAG
AATATATTTTTCGTTTTAATATAATATGTGGAATAAAATTGTATGCATTT
TTATGTGTAATATCCCTATATGTATCCCttctcacagccccactggaaat
ccttcccactggaaaaattggccaaaatatggTCCCCGCAGTGGAAAATC
ATCCTCCAGCCTTTGTcctcgctgaaaataatcaattaaaccaatcctca
ctgcaaaatacttACTATTTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00068298-protein

>TCONS_00068298-protein ID=TCONS_00068298-protein|Name=TCONS_00068298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
FCCISVTIIIGEREEITKKENNGDIELKKIGQEVLKEMTKKWKTFIQKTE
AKYKSHMWASRYWNKINKILLSAMAIFGAVATLLALLQTVTIFIIAGLVA
TLTFLVCLYAVLQPAERKHKHIRSAKEFQNLMMRMVRCKTGIEFEQLWHD
MNRCIFEEPILKKRHVYPISTDTEQIHWTMSQELSKFIELKKEEAKRMVK
QYANRCVGTTSDVVNIEPWQFGNNQNHRNGAYAGNSMYQSSYNTYPGSNA
VVSYGGAVSGGHQSSRDYQFTNGFDHHKAIVTTTATGSRDDEFEVLFAQK
SHQEVWEDGKRKKRQIFEQFRRSKSMK
Run BLAST on NCBI

transcript from alignment at scaffold_482:219214..221344-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068298 ID=TCONS_00068298|Name=TCONS_00068298|organism=Clytia hemisphaerica|type=transcript|length=2131bp|location=Sequence derived from alignment at scaffold_482:219214..221344- (Clytia hemisphaerica)
TTTTGTTGTATCAGTGTGACGATTATCATTGGAGAGAGAGAAGAAATAAC
AAAAAAGGAAAATAATGGAGGTGAGATTTGTTACTTCAAGGTGGACAAAA
AACTTTCACAAACTAAGAAAGATGGACCAGTAATTCTAGCTAGTTTGATT
CCTATAACTGGTTTTAATCGTGCGATCCTAGTTGTGACTGGTTAAATAAG
CTACGTTCTGTCGCAGGGTCCTACCTGACAGAGGGCGATAGAAATTGAAC
TTCAAGAAATTGGAGGATTATTTGACTGAAAATTTCCGCCTTCGTAACCT
TAAATAAATGACTGCATCTTGGTATTTCTAATCTTATTGATGATATGGTA
GATTGGATTTGTCTGAGTCCATCATTAAAAAAATGGATGTATTCTAAAAT
CTTCGGTAACAGCTCAATCGTAATATCCTTTAAATGTCTCAATTATTTCA
TTCTCAACTTGTTTTAGACGGATAAAGATATTGAGCTCAAGAAGATTGGC
CAAGAAGTCCTCAAGGAGATGACCAAGAAATGGAAAACCTTCATCCAGAA
GACCGAAGCCAAATACAAAAGTCATATGTGGGCATCACGCTACTGGAACA
AAATCAATAAAATCCTTCTGTCAGCTATGGCAATCTTTGGAGCTGTTGCA
ACTCTGTTGGCATTACTACAAACGGTGACTATATTCATCATTGCTGGGTT
AGTGGCAACGCTAACATTCCTAGTTTGTCTGTACGCTGTGTTACAACCAG
CTGAGAGAAAACACAAACATATCAGATCTGCCAAAGAGTTCCAAAACCTC
ATGATGCGAATGGTAAGATGTAAAACAGGAATCGAATTTGAACAACTCTG
GCATGATATGAACCGATGCATCTTCGAAGAACCTATTCTGAAGAAACGGC
ATGTATATCCAATATCTACCGATACTGAACAGATCCATTGGACAATGTCT
CAAGAGTTGTCTAAGTTTATCGAGTTGAAGAAGGAGGAAGCGAAACGGAT
GGTAAAGCAGTATGCTAACAGGTGTGTTGGTACAACCTCGGATGTGGTCA
ATATTGAACCCTGGCAATTTGGGAACAACCAGAATCATCGAAACGGTGCA
TATGCAGGGAATTCGATGTACCAGTCATCCTATAATACATACCCTGGATC
AAATGCTGTGGTAAGTTATGGAGGAGCAGTCTCTGGTGGCCATCAATCTT
CCAGAGATTACCAGTTCACCAATGGTTTTGATCACCATAAAGCAATCGTA
ACCACTACAGCCACTGGTAGTCGAGATGATGAATTTGAAGTTCTGTTTGC
TCAGAAATCTCACCAAGAAGTCTGGGAGGATGGGAAGAGAAAGAAAAGAC
AGATCTTCGAACAATTCAGAAGAAGCAAGTCTATGAAATGAACTGTTGTA
TTCTGGAATATGGATAAAGAATTGAAATTAAATGGCGGAGAAGTATCAAG
ACTTCCATTAGACAAAAGAACCCAAAATTGATTTTCCAACTTGAAGGTTA
TACAATTGGAAAGAGTAGTCGGAATTGATGACTAAAGTTCTATTTCTAAA
ATGGCAACGAAAGAGACAAGAAATATAGGTTAAATGAACAATAATTTTTA
TTTTGTATTTTTATAAATTTTTGTTGGGTTTGAATGTTTTTGTTATTTAT
AAACTTGTTGTCTCAAAGTAGTATAGACATTGTCATTGGGGTAACACGCT
CGCTTACACACCGCTGGGAAAAAGGAATGATATAATTTATGTTGCGTTAG
CCTTAGCTTGTTTCTTTATTAAAGAAATTAATGTGTGTTATAAAAAGTAT
AAATTCTGATAGAAAATAAAGAAATGAATTCTAAGAATAAATTGGAAATT
CTTATTTACAGCAATCAAAAAATTTTAATTCGTTAAAAACATGGTATACG
TTACCAGAATATATTTTTCGTTTTAATATAATATGTGGAATAAAATTGTA
TGCATTTTTATGTGTAATATCCCTATATGTATCCCTTCTCACAGCCCCAC
TGGAAATCCTTCCCACTGGAAAAATTGGCCAAAATATGGTCCCCGCAGTG
GAAAATCATCCTCCAGCCTTTGTCCTCGCTGAAAATAATCAATTAAACCA
ATCCTCACTGCAAAATACTTACTATTTTTTC

Coding sequence (CDS) from alignment at scaffold_482:219214..221344-

>TCONS_00068298 ID=TCONS_00068298|Name=TCONS_00068298|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_482:219214..221344- (Clytia hemisphaerica)
ATATTGAGCTCAAGAAGATTGGCCAAGAAGTCCTCAAGGAGATGACCAAG
AAATGGAAAACCTTCATCCAGAAGACCGAAGCCAAATACAAAAGTCATAT
GTGGGCATCACGCTACTGGAACAAAATCAATAAAATCCTTCTGTCAGCTA
TGGCAATCTTTGGAGCTGTTGCAACTCTGTTGGCATTACTACAAACGGTG
ACTATATTCATCATTGCTGGGTTAGTGGCAACGCTAACATTCCTAGTTTG
TCTGTACGCTGTGTTACAACCAGCTGAGAGAAAACACAAACATATCAGAT
CTGCCAAAGAGTTCCAAAACCTCATGATGCGAATGGTAAGATGTAAAACA
GGAATCGAATTTGAACAACTCTGGCATGATATGAACCGATGCATCTTCGA
AGAACCTATTCTGAAGAAACGGCATGTATATCCAATATCTACCGATACTG
AACAGATCCATTGGACAATGTCTCAAGAGTTGTCTAAGTTTATCGAGTTG
AAGAAGGAGGAAGCGAAACGGATGGTAAAGCAGTATGCTAACAGGTGTGT
TGGTACAACCTCGGATGTGGTCAATATTGAACCCTGGCAATTTGGGAACA
ACCAGAATCATCGAAACGGTGCATATGCAGGGAATTCGATGTACCAGTCA
TCCTATAATACATACCCTGGATCAAATGCTGTGGTAAGTTATGGAGGAGC
AGTCTCTGGTGGCCATCAATCTTCCAGAGATTACCAGTTCACCAATGGTT
TTGATCACCATAAAGCAATCGTAACCACTACAGCCACTGGTAGTCGAGAT
GATGAATTTGAAGTTCTGTTTGCTCAGAAATCTCACCAAGAAGTCTGGGA
GGATGGGAAGAGAAAGAAAAGACAGATCTTCGAACAATTCAGAAGAAGCA
AGTCTATGAAATGATTTTGTTGTATCAGTGTGACGATTATCATTGGAGAG
AGAGAAGAAATAACAAAAAAGGAAAATAATGGAGATATTGAGCTCAAGAA
GATTGGCCAAGAAGTCCTCAAGGAGATGACCAAGAAATGGAAAACCTTCA
TCCAGAAGACCGAAGCCAAATACAAAAGTCATATGTGGGCATCACGCTAC
TGGAACAAAATCAATAAAATCCTTCTGTCAGCTATGGCAATCTTTGGAGC
TGTTGCAACTCTGTTGGCATTACTACAAACGGTGACTATATTCATCATTG
CTGGGTTAGTGGCAACGCTAACATTCCTAGTTTGTCTGTACGCTGTGTTA
CAACCAGCTGAGAGAAAACACAAACATATCAGATCTGCCAAAGAGTTCCA
AAACCTCATGATGCGAATGGTAAGATGTAAAACAGGAATCGAATTTGAAC
AACTCTGGCATGATATGAACCGATGCATCTTCGAAGAACCTATTCTGAAG
AAACGGCATGTATATCCAATATCTACCGATACTGAACAGATCCATTGGAC
AATGTCTCAAGAGTTGTCTAAGTTTATCGAGTTGAAGAAGGAGGAAGCGA
AACGGATGGTAAAGCAGTATGCTAACAGGTGTGTTGGTACAACCTCGGAT
GTGGTCAATATTGAACCCTGGCAATTTGGGAACAACCAGAATCATCGAAA
CGGTGCATATGCAGGGAATTCGATGTACCAGTCATCCTATAATACATACC
CTGGATCAAATGCTGTGGTAAGTTATGGAGGAGCAGTCTCTGGTGGCCAT
CAATCTTCCAGAGATTACCAGTTCACCAATGGTTTTGATCACCATAAAGC
AATCGTAACCACTACAGCCACTGGTAGTCGAGATGATGAATTTGAAGTTC
TGTTTGCTCAGAAATCTCACCAAGAAGTCTGGGAGGATGGGAAGAGAAAG
AAAAGACAGATCTTCGAACAATTCAGAAGAAGCAAGTCTATGAAATGATT
TTGTTGTATCAGTGTGACGATTATCATTGGAGAGAGAGAAGAAATAACAA
AAAAGGAAAATAATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042624XLOC_042624Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068298-proteinTCONS_00068298-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068298-exon-scaffold_482-1575043694:221275..221344TCONS_00068298-exon-scaffold_482-1575043694:221275..221344Clytia hemisphaericaexon
TCONS_00068298-exon-scaffold_482-1575043694:219214..220867TCONS_00068298-exon-scaffold_482-1575043694:219214..220867Clytia hemisphaericaexon
TCONS_00068298-exon-scaffold_482-1510915933:221275..221344TCONS_00068298-exon-scaffold_482-1510915933:221275..221344Clytia hemisphaericaexon
TCONS_00068298-exon-scaffold_482-1510915933:219214..220867TCONS_00068298-exon-scaffold_482-1510915933:219214..220867Clytia hemisphaericaexon
TCONS_00068298-exon-scaffold_482-1491911889:221275..221344TCONS_00068298-exon-scaffold_482-1491911889:221275..221344Clytia hemisphaericaexon
TCONS_00068298-exon-scaffold_482-1491911889:219214..220867TCONS_00068298-exon-scaffold_482-1491911889:219214..220867Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:219214..221344 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.0287623	0	0	0	0	0	0	0	0	0	0	0	0	0.0767524	0	0	0	0.0395023	0.0367559	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top