TCONS_00068295 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068295
Unique NameTCONS_00068295
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068295 ID=TCONS_00068295|Name=TCONS_00068295|organism=Clytia hemisphaerica|type=transcript|length=179bp
GGAATAAATTTGAGTCGAATCGAGTTTGCTAAATAATGTTAAATTTCTCT
TCTTGCAACAAAACTTAGATGTCGAATGAAACAACaccgccatcttggat
ttccATCAAAACTGACTTTCGTATCCGTCAAACAAACATTTCTAGCGGGC
CGTGGAAGAGCACTCTCGTACGCCCAATT
Run BLAST on NCBI

transcript from alignment at scaffold_482:195678..196175-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068295 ID=TCONS_00068295|Name=TCONS_00068295|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_482:195678..196175- (Clytia hemisphaerica)
GGAATAAATTTGAGTCGAATCGAGTTTGCTAAATAATGTTAAATTTCTCT
TCTTGCAACAAAACTTAGATGTCGAATGAAACAACAGCCCAACCTCGTTC
CCTGCGTATTATTAGCTTTTTTATGCTTACTGATAGCGCTAGATAATACC
CTGGCATTGGCTGGTTTTCGAACGCGTAAGATTACGTAATTCGAAAACAA
AACGTCAGATTTCATTTGTTCCTGGATTTTGAAACCATTGCATTGCAGTG
TAACTTTGCAACGTCAAAAATTTTTATGACGTATTGTTTCGAGAAGTTCC
CCCTCTGAGAGGGGGAACTCGCATCAGCCAACACCAGGGTATTCTCTGGC
GTCAATTAGTAACGTAAATAAAGCCTGGGATACACGGGGACGAGGTTGAC
AACAGCCGCCATCTTGGATTTCCATCAAAACTGACTTTCGTATCCGTCAA
ACAAACATTTCTAGCGGGCCGTGGAAGAGCACTCTCGTACGCCCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042623XLOC_042623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068295-exon-scaffold_482-1575043694:196090..196175TCONS_00068295-exon-scaffold_482-1575043694:196090..196175Clytia hemisphaericaexon
TCONS_00068295-exon-scaffold_482-1575043694:195678..195770TCONS_00068295-exon-scaffold_482-1575043694:195678..195770Clytia hemisphaericaexon
TCONS_00068295-exon-scaffold_482-1510915933:196090..196175TCONS_00068295-exon-scaffold_482-1510915933:196090..196175Clytia hemisphaericaexon
TCONS_00068295-exon-scaffold_482-1510915933:195678..195770TCONS_00068295-exon-scaffold_482-1510915933:195678..195770Clytia hemisphaericaexon
TCONS_00068295-exon-scaffold_482-1491911889:196090..196175TCONS_00068295-exon-scaffold_482-1491911889:196090..196175Clytia hemisphaericaexon
TCONS_00068295-exon-scaffold_482-1491911889:195678..195770TCONS_00068295-exon-scaffold_482-1491911889:195678..195770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:195678..196175 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.33978	0	0	0	0	0	0	0	3.03297	0	2.67592	1.64826	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068295 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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