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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068293 ID=TCONS_00068293|Name=TCONS_00068293|organism=Clytia hemisphaerica|type=transcript|length=1638bp
GAAACTTAATGACGTATTTGTTGTTGTCAAAGTACtttaaaagaatttga
aaatatgcTCAGAAAATTATACTTCTTTGAAGACTATTGACAGCACTATC
TTGTTTCAAAATAGAGCTTTAAAACATACAAAACATGGAAGCAACTACGT
TGAAGAAAGGTAGGTACATTGATCTTGGTTTACCGGAGGATAAAACACCC
ATGTTGTTATCTGATTACAAGGCAGGCAATCGATGGGAATGGAAAAGGAC
GAGGGAATATCATAgtgaaatggaaaaacgaaACCACGAATTTTCAAGTA
AACAACCTAAAGGAGAAGCTTCAGAATACCTCGAAGTGTATTCAAAGGAA
GCCGAACAAAAGGAAGCGCCTACACCAAGAATTCGAAGTCGAAGATTTTC
TCCGCTCGTCCCAAAGGAAAAAACACAGACGTCAGAAAAACCTAACGTTG
TAGGAGATAAAACTGTCGCTTTGGGAACAAAAGATGAAGTTTATGCGACT
GGTGACGCAGGGTTGCTTGGAGCTGTTTTGGAAGCATATAATCATCAttg
gaatctcaaaatttctCCTGATGATTTTTGGATCCCTGTTGCAATTCGTG
TTGGTAGGAAAATCAATGATAATGCTAAGGAGGACAAAGTTAGAGATTTC
TTTGTTGATTTCGAAGgcaaaaaagaaattgtcatTTTTACTAACGCAGA
GACAATTCATGAAGTCGATTATGTCTGgttatttgaagaattttcacaaa
acataaaaaatctcATCAAAAAGCCAGAGTACAACGACCTGATGACTGCT
AGTTTTTCCACTTCGACCCCAGTCTCAAAAATCGCCTCCCAAATCAATAT
AATGTCTTCActtcaagaatattttgaatataCCACGGTAACTATGTGTG
GGATCAAAGGAGTCGAGTTGCTGGGAACATTAGAAGACTGGAAATCACTC
ATTACAAAAATTGATCAACTTGCTGAATTGCTCAAACCTCTTGAAGACGT
CTTGAAGCTTTCTTATTGGTTTAAGATCGTAAGGGAAGTGTATGTGAATT
TGTTGGCAACATTTGAAGGCAATCCAGATATTGGTTGGTGGAGCAGAATT
ATTTCGACAGACAACCATGGCTCTGGCGAATGTAAATACGAGGGTTGGAT
CTTTCAATTTCTACAAggtaaatgtggcttcaataatttatcaaaaatgc
AAAGTTCGATAACGAGCGTGCCGATGAAAATAACGTACGATCCACAAGCC
GAAGGAGAACAAAGTGCTCTTGTGTCAGGACCAGTTGGATTTACAATCGA
AGAAGGAAGTGAAGATTCGAAAAATGTTGCAACAATTCGACCGTACATTG
GATGGGCTTTGTTGCTACCAAAGTATTCAGCATTTAGATGAAACTAGCGG
TCCCAGACGTCGTCAAAGACAACTTTTCACTATATTTCATTAGCTCCATT
GAAAACAACACTTCTTATAATATATTTCGATAGCCATctcgaaaataaga
aaatagcgTTTATCCCTACTGTGCGTCGATTCAATGAGGCCCccaaagcg
gttttcgtgatggcgtaaTTGgcgtttttttcaagttcatgatttcgtga
tttaaggttttaaagtgcgtgattatattcgtattttg Run BLAST on NCBI transcript from alignment at scaffold_482:189255..193301- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068293 ID=TCONS_00068293|Name=TCONS_00068293|organism=Clytia hemisphaerica|type=transcript|length=4047bp|location=Sequence derived from alignment at scaffold_482:189255..193301- (Clytia hemisphaerica)
GAAACTTAATGACGTATTTGTTGTTGTCAAAGTACTTTAAAAGAATTTGA
AAATATGCTCAGAAAATTATACTTCTTTGAAGACTATTGACAGCACTATC
TTGTTTCAAAATAGAGCTTTAAAACATACAAAACATGGAAGCAACTACGT
TGAAGAAAGGTAGGTACATTGATCTTGGTTTACCGGAGGATAAAACACCC
ATGTTGTTATCTGATTACAAGGCAGGCAATCGATGGGAATGGAAAAGGAC
GAGGGAATATCATAGTGAAATGGAAAAACGAAACCACGAATTTTCAAGTA
AACAACCTAAAGGAGAAGCTTCAGAATACCTCGAAGTGTATTCAAAGGAA
GCCGAACAAAAGGAAGCGCCTACACCAAGAATTCGAAGTCGAAGATTTTC
TCCGCTCGTCCCAAAGGAAAAAACACAGACGTCAGAAAAACCTAACGTTG
TAGGAGATAAAACTGTCGCTTTGGGAACAAAAGATGAAGTTTATGCGACT
GGTGACGCAGGGTTGCTTGGAGCTGTTTTGGAAGCATATAATCATCATTG
GAATCTCAAAATTTCTCCTGATGATTTTTGGATCCCTGTTGCAATTCGTG
TTGGTAGGAAAATCAATGATAATGCTAAGGAGGACAAAGTTAGAGATTTC
TTTGTTGATTTCGAAGGCAAAAAAGAAATTGTCATTTTTACTAACGCAGA
GACAATTCATGAAGTCGATTATGTCTGGTTATTTGAAGAATTTTCACAAA
ACATAAAAAATCTCATCAAAAAGCCAGAGTACAACGACCTGATGACTGCT
AGTTTTTCCACTTCGACCCCAGTCTCAAAAATCGCCTCCCAAATCAATAT
AATGTCTTCACTTCAAGAATATTTTGAATATACCACGGTAACTATGTGTG
GGATCAAAGGAGTCGAGTTGCTGGGAACATTAGAAGACTGGAAATCACTC
ATTACAAAAATTGATCAACTTGCTGAATTGCTCAAACCTCTTGAAGACGT
CTTGAAGCTTTCTTATTGGTTTAAGATCGTAAGGGAAGTGTATGTGAATT
TGTTGGCAACATTTGAAGGCAATCCAGATATTGGTTGGTGGAGCAGAATT
ATTTCGACAGACAACCATGGCTCTGGCGAATGTAAATACGAGGGTTGGAT
CTTTCAATTTCTACAAGGTATGTAAAAAAAATTCTTAACTCCCGTTGAAA
TTTGGCACACTTAATCTTTGGGCGAATTCCTGGGGTAATTTTCTTTTTCA
TTTTTTCAAAATTTTGATCTTTAAGAGCGTGGTCACGAGTGTTAGCCCCA
AAATGAGGTTGAAGCTTTGGAGCAGGCTAGAGACTTCAGAATGATGCGAT
TTGGTTGAAGTTGGTTAGAGTTGGACGTTCGACAGTGTTTCAGAACTCAT
AGATTTAAAAGGTTTACATAGAACAGGTTTTATTAAAAGGTTTTTGAAAA
AGCTTGTGAATCAAAATTGATGAGTAAGCAAACGATATCACTCTTATTCA
AAAAGCTTTAAATCTTAAAATTTCGAATTTTCTTTGACTCGATCAACAAA
ATTTGAACATTTTTTCTGAGTAAACTCTCACTCTCACAAAAGTACAAAAC
TGTTGGAGATGAATTTTTTTTGCGATATATTGCACCGACAGCTAGTACTT
AAGTAAACTTTTTTTCAATCTAGGTAAATGTGGCTTCAATAATTTATCAA
AAATGCAAAGTTCGATAACGAGCGTGCCGATGAAAATAACGTACGATCCA
CAAGCCGAAGGAGAACAAAGTGCTCTTGTGTCAGGTAAGCTATCAGATTT
CTATAACAACAACTGTTAAGAACCAGGTTCCACAACCTAAGAAGAATGTG
ATGTTAGAAAGGGATAAGAAAATTCTGATGTCAATAACATCAAGAAGAAC
AAGAAGCCCGTTGGGCGTGAAGGCCCAGCAAAAGTGAAATTTTTGCGCGC
GATTTTCGCGAATTTCGGAATTTCTAAAAATTCCAAAAAATGTTTAACAA
GATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCAAGATTTCAAATTTCCCCCAGGAAAGGGATGGCCAAAAGA
TTTAAAATTTTACTGCGTCGAACAAAACACAATGAAAAATAAGTCAACAA
GGATAATTCTCCCTTCCTTCATTTCTTAGAACAGGGAAACGTAGCATCAT
GGAAAAAGTTCCAATCTTGTTCAAATTTACACATGAGCTGCATTTTAGTC
TCCATTGCCATAATCCATTAATAATCGGTATCTGAAATAATTCTGTGTTG
CGAGTTTGAAAAATCAAACCACCAATTCGTTAAACGAGACAGATCTAGAA
ACAACCATCTTCACACGTAGCATCATGGAAAAAGTTCCAATCTTGTTCAA
ATTTACACACGAGCTGCATTTTAGTCTCCATTGCCATAATCCATTAATAA
TCGGCATTTGAAATAATTCTGTGTTACGAGTTTAAAAAACCAAACCACCA
ATTCGTTAAACGAGACAGATCTAGAAACAACCATTTTCACACGTAGCATC
GTGGAAAAAGTTCCAATATTGTTCAAATTTACACATGAGCTGCATTTTAG
TCTCCATTGCCATATTCCATTTTAAATCGGAATATATTTGAAATAATTCT
GTGTCGTGTTTGAAAAATCAAGCCACCGATCGTTAAACGAGACAGATCCA
TAAATAACCATTTTCACACGTAGCATCATGGAAAAAGTTCCAATCTTGTT
CCAATTTACACATTAACTCCATTTTAGTGTCCCTTAACAAATTCCAGAAT
CAGTTTACTTGAAATAATTCTGTGTTGAGTACGTTGTCGAGTTTGAAAAT
CATGCCACGTCCCAGTGTCACTGTACTGACCGTTGTTTAACAGCGACAGA
TCCAGAAGCAACATTGTGTGTTATTTAAATTTACACATTTCAGTTTATTT
ATTTCTATATTAGAAGCCATTATTTCCTAAAAATGAAGTCTTTTTGAAAA
CAAGAAACTTAAAATGACAGTGATTTAAGGTAGAATTTTCAGCCCTAAAG
CTTTAGCCTTTATGAAAACTTGAGCAAAAACTATAAGATATGACAGAATG
TTGAAAAAGGTTTACAAAGAAAAATCACTAAAAGGTTTCTTTGGTTTGAA
AGTCTCTAAAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAGCGCCGTTTCTACCAAAACGGACAGACAGAAGGA
AACACGGACAAAAAAATAGTGAGACTCTCATTAAAGGCCCACTCGCTAGC
GCTGGGCCAATTAAACGTGAAATCTGGAAAAATAGTCAAAGAGCTAACAC
AACAATAAAATTGCATTAAAAACACATCTTTTTTCAGGACCAGTTGGATT
TACAATCGAAGAAGGAAGTGAAGATTCGAAAAATGTTGCAACAATTCGAC
CGTACATTGGATGGGCTTTGTTGCTACCAAAGTATTCAGCATTTAGATGA
AACTAGCGGTCCCAGACGTCGTCAAAGACAACTTTTCACTATATTTCATT
AGCTCCATTGAAAACAACACTTCTTATAATATATTTCGATAGCCATCTCG
AAAATAAGAAAATAGCGTTTATCCCTACTGTGCGTCGATTCAATGAGGCC
CCCAAAGCGGTTTTCGTGATGGCGTAATTGGCGTTTTTTTCAAGTTCATG
ATTTCGTGATTTAAGGTTTTAAAGTGCGTGATTATATTCGTATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068293-exon-scaffold_482-1575043694:192135..193301 | TCONS_00068293-exon-scaffold_482-1575043694:192135..193301 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1575043694:191518..191628 | TCONS_00068293-exon-scaffold_482-1575043694:191518..191628 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1575043694:189255..189614 | TCONS_00068293-exon-scaffold_482-1575043694:189255..189614 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1510915933:192135..193301 | TCONS_00068293-exon-scaffold_482-1510915933:192135..193301 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1510915933:191518..191628 | TCONS_00068293-exon-scaffold_482-1510915933:191518..191628 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1510915933:189255..189614 | TCONS_00068293-exon-scaffold_482-1510915933:189255..189614 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1491911889:192135..193301 | TCONS_00068293-exon-scaffold_482-1491911889:192135..193301 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1491911889:191518..191628 | TCONS_00068293-exon-scaffold_482-1491911889:191518..191628 | Clytia hemisphaerica | exon |
| TCONS_00068293-exon-scaffold_482-1491911889:189255..189614 | TCONS_00068293-exon-scaffold_482-1491911889:189255..189614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:189255..193301 - |
Blast
The following BLAST results are available for this feature:
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