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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068277 ID=TCONS_00068277|Name=TCONS_00068277|organism=Clytia hemisphaerica|type=transcript|length=1928bpRun BLAST on NCBI protein sequence of TCONS_00068277-protein >TCONS_00068277-protein ID=TCONS_00068277-protein|Name=TCONS_00068277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp MLLKRLLNKVVCDCSRNYHHARPVIKYNLTKPAVDLAKHDPENKFSPLVRRun BLAST on NCBI transcript from alignment at scaffold_482:435693..463119+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068277 ID=TCONS_00068277|Name=TCONS_00068277|organism=Clytia hemisphaerica|type=transcript|length=27427bp|location=Sequence derived from alignment at scaffold_482:435693..463119+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_482:435693..463119+ >TCONS_00068277 ID=TCONS_00068277|Name=TCONS_00068277|organism=Clytia hemisphaerica|type=CDS|length=9960bp|location=Sequence derived from alignment at scaffold_482:435693..463119+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068277 vs. Swiss-Prot (Human)
Match: RM04 (39S ribosomal protein L4, mitochondrial OS=Homo sapiens GN=MRPL4 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 7.367e-33 Identity = 81/209 (38.76%), Postives = 119/209 (56.94%), Query Frame = 3
Query: 804 FEDGKIKGDIQLNNFVFGANPRMDILHRNVVWYRASIRAGTASVKRRSEVRGGGRKPWRQKGTGKARQGSIRAPHWRKGGSAKGPK-PRDWAYDLPYKVRRLGLRTALSARLAQGDLTXXXXXXXXXXXXXXFGEILREHGLQNSLIVDGFENFNLN----EVTEPLEKVDATHSLFLHVYGIMIRHKLVLSLQALRILEEKLC-EDGR 1412
FE ++ G L+ VF PR+DILH+ +W + R A K R+EVRGGGRKPW QKGTG+AR GSIR+P WR GG A GP+ P + Y LP KVR LGL+ AL+ +LAQ DL +++ L + E+ +S+++ + + E T L+ + ++ L+V+ ++ LVL+L + LE+KL +D R
Sbjct: 72 FEQERV-GLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLLWQDSR 279 The following BLAST results are available for this feature:
BLAST of TCONS_00068277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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