TCONS_00068272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068272
Unique NameTCONS_00068272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068272 ID=TCONS_00068272|Name=TCONS_00068272|organism=Clytia hemisphaerica|type=transcript|length=630bp
atactaatttctagctgaggggaccaataatTTAGTTCGAATTGCAGAGA
GATTCGAAAGTAGGGGTTCGAATTAGAGGGAGTTAACTGTATCATGAATT
GGTCGTTTCTTTAGAACCAGTGTGGAAAGGCTTGACGGAGGAAGAGTTGA
TTACCATCATTGCTGGTTGTTCTTTGTTCTTGATCATCCTTGTTGTCATC
ATCACTGTATTGTGctgtaaaagaaaacaaaaaagCACTGGTAAACATAA
AGTCAGTCAGAAGGTCCAACCACACCCAACAGACGAACAAGACGAGCATC
AATACGTCAACGCCAAATTCGCCCTGGAAATGGAATGTAGGGAACGCCCC
AAAGAACTTACAGATCCTGCAGAATCACCAAGAATGGATGACAGACACAA
TGGTGTGAATTATCATATCAATGACCTATACACTATGTCTTAAAAAACAA
ATGGATTGCTggatttgaactttttttttgaatggaaGAAGAAGTTTTGA
CATCAATATGTAGACAAAGAACTTGATTTAAATGGAGACATGGAATGTAT
ccaatttattttctaaaacttttaCGTCAAGCTTTGTAATTTCAGGGCAG
TCAAGTATTTTGATGATCTAATAAAACCTA
Run BLAST on NCBI

transcript from alignment at scaffold_482:385635..390659+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068272 ID=TCONS_00068272|Name=TCONS_00068272|organism=Clytia hemisphaerica|type=transcript|length=5025bp|location=Sequence derived from alignment at scaffold_482:385635..390659+ (Clytia hemisphaerica)
atactaatttctagctgaggggaccaataatTTAGTTCGAATTGCAGAGA
GATTCGAAAGTAGGGGTTCGAATTAGAGGGAGTTAACTGTATCATGAATT
GGTCGTTTCTTTAGAACCAGTGTGGAAAGGCTTGACGGAGGAAGAGTTGA
TTACCATCATTGCTGGTTGTTCTTTGTTCTTGATCATCCTTGTTGTCATC
ATCACTGTATTGTGctgtaaaagaaaacaaaaaaggtaCGCTCtccttat
tgttcttataaagaagaaCTTTGAATCGGTTTCCTCAGCAAGtgatacct
taaaggaagaaattttggcggaaagaaaatttggcggatttggcagattt
ggctgaaatccgccaaattaagttcccgccaaaatttcttttttccgcca
tccgccaaattaaattcccgccaaattaaacattttgaaaatatgatNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaattaaacattttgaaaatatgatctcttttaag
gtgtttttgctattttttcgctgttttgacgccatcttaaggttaatttt
tttaagcgaccgccaaattaaatccccgctaaatttagttttttcgtcca
tccgccaaattaaattccctctgaaaaaacttttttggccatctgccaaa
ttaaattcccgccaaatttagttttttcgtccatccgccaaattaaattc
cctctgaaaaaacttttttggccatctgccaaattaaattcccgccaaaa
tttcttcctttaagggtATCTAGAATACCTAAAGTGAAACCTTTTATAGC
CCACGATCATTAGGAGCGTTTTAGAAGTTGCACAAAAATTCTCACAACGT
CGTGACACTaagaacacccctgtgtcacagagcCGTTgggaaaatttagc
caaaatttcgtccccggtagtaaaaataccccaaaatttcAGCTCTACTG
AGAAATTGGCTTTGATTACATCCACATTCAAATTTcattgtaaaaaattg
cacttcaaaaccatcccctcTGGattttttaagggctctgaccatagtcc
aaaaattgattttggtgtttgagcataaaatttatatttcaggttcctta
acacttttaacaaagaattgcctttataaattgctttttaatcgaatccc
ttaagagtaattaagaatttaattgcaaaaatNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGAccaaactaagctcttcaaagttgaagtactcttcc
tcgcaaaagtcttcattttcttcttcatcaaattttttcaatgcaaattt
tgaattttcagattcagcaatagtttgtctaacagaaaatgtataacata
ccatagttttgttggttacatcagtcagaaaacacattataaacacggca
attatgaaaaattcactatggtcagagcccttaagcttggaacaatagaa
tctcTATCCCCAttacacgcttcttttttttttataagaatgatgtaaat
ccatttcatcatggatattcttaacttttttgggaaaatcatcctaaaat
attcttacagcattcttaagttaggatcctaattcagactagatttaaca
tacgtctcaagcataaaatggcatttttagaaaggagtgagccttactaa
taattgacaatttataattgaaaatgctctaaaaaaggcattcttagctt
gagaagcaaaattccatgatggtggtattcttagcattattattcttaat
tttttggccatttccatcatggacattcttataaagtgtaatcttataaa
aaacaagctagatgctgaatggacctacctgatgatgaaagttagatagc
aatgcgaggagaaaaatgaaaaaaaatcagtcagaaaatatattataaat
atAATAAATCAGATATTTCTCTCTTATAAGAACTCCTACAAAATGTTAca
agaacttgtaaaaataaaattgattgaaaaatcaaagaaaaaacacAAAC
TTTAGCCTAACGCtcaaaaagtatatataatataCATAATCAGTTGATNA
GAActtgtaaaaagaaaattgattgaaaaatcaaagaaaaaacacaaaat
tttagcCTAACGCTCAAAAAGTATACACATATACATAATCAATTGAGATC
ACATTACATGTAGCCTGTAGCCTCTGTAATGTTTATGTCCATGGTATGAG
CTACAGTTCTCTTGGGTGTTCTACTCCCCCGAATACATAAAACAGTCGAT
CTGACCAAAGCAAAAGATAGTTTAGTCCTCAAGAAATTTAAAGTCAAAGA
CAtcatttcattctttttctcaGACAAGAGCATACTGAGGGTTTTTATGA
ACATTTGTGCTTCCCTGCCTGAGCCTCCATTTGTTGTGAAAATTAGAGGC
GTAAAGGATCTTCCCTCAACCTGTATAATTCTctgaaaatatagcgttta
gcgaaaatgcataacgcaataaattcatcattgattgttgatgggggggg
ggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtaaaaaacat
agaaatgaatataaggaaaaaatccaatgaaaatctgcaaacacggcgat
ttccagcattttcaaccggaaaaaatttttctcaaaaatcgaactcggcc
atgttttgggcattgtttatacgcatctttgagcgaaaaatcagaaaaaa
ctaatgataaaatcttgagaaaatgccaaaaaaacagtttttccggcata
tttccggcattttcggtcggaaaaaaatgttttttgaaaatcgggcttcg
tcacattcgagggtttatagttatgcatctttgtgcaaaaaatcataaag
aatgaaagagccaatctcaagaaaagctaataccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatt
ttgggcattgccattttgcatctttgtgccaaaaatcagaaaaaactaat
gagccaatctcgagaaaagctggtaacagacgaacggacggacgaacgaa
cagacaacggttaattcataggacctccaccggggtacccggaggtaggt
ccaaaaagcgtgTAGGATTACGACGAAATAATTTATCCCTACTGTGggga
aaagtttcaccggggctgtacAACAGGGGTGTCTAAGAGCATCTTTATGC
TTATAACTCAATAAGTTAAGGACATTCGAAGGCCTCAAAAATTTAGGACG
TTCTTTCAAATGTCCATCTCAATTTTTCAGCACTGGTAAACATAAAGTCA
GTCAGAAGGTCCAACCACACCCAACAGACGAACAAGACGAGCATCAATAC
GTCAACGCCAAATTCGCCCTGGAAATGGAATGTAGGGAACGCCCCAAAGA
ACTTACAGATCCTGCAGAATCACCAAGAATGGATGACAGACACAATGGTG
TGAATTATCATATCAATGACCTATACACTATGTCTTAAAAAACAAATGGA
TTGCTggatttgaactttttttttgaatggaaGAAGAAGTTTTGACATCA
ATATGTAGACAAAGAACTTGATTTAAATGGAGACATGGAATGTATccaat
ttattttctaaaacttttaCGTCAAGCTTTGTAATTTCAGGGCAGTCAAG
TATTTTGATGATCTAATAAAACCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042613XLOC_042613Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068272-exon-scaffold_482-1491911889:385635..385869TCONS_00068272-exon-scaffold_482-1491911889:385635..385869Clytia hemisphaericaexon
TCONS_00068272-exon-scaffold_482-1510915933:385635..385869TCONS_00068272-exon-scaffold_482-1510915933:385635..385869Clytia hemisphaericaexon
TCONS_00068272-exon-scaffold_482-1575043694:385635..385869TCONS_00068272-exon-scaffold_482-1575043694:385635..385869Clytia hemisphaericaexon
TCONS_00068272-exon-scaffold_482-1491911889:390265..390659TCONS_00068272-exon-scaffold_482-1491911889:390265..390659Clytia hemisphaericaexon
TCONS_00068272-exon-scaffold_482-1510915933:390265..390659TCONS_00068272-exon-scaffold_482-1510915933:390265..390659Clytia hemisphaericaexon
TCONS_00068272-exon-scaffold_482-1575043694:390265..390659TCONS_00068272-exon-scaffold_482-1575043694:390265..390659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:385635..390659 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0842702	0	0	0.0933487	4.54572	1.07763	3.25028	4.26002	7.52736	13.6339	6.91554	4.546	23.8754	24.271	6.07713	8.98658	8.6668	5.64115	33.8616	43.2142	7.41442	6.91506	12.0778	11.0683	19.0907	14.8578	13.635	15.6615	31.2401	21.918
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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