TCONS_00068270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068270
Unique NameTCONS_00068270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068270 ID=TCONS_00068270|Name=TCONS_00068270|organism=Clytia hemisphaerica|type=transcript|length=3729bp
ATGAAATCTTTTGATGGAAGATTCAAAGGAAAAGGATTCATGACATTGGA
AAATTCTGATAAGTTTTTCACTCGAATGTTTAATTCCCAAAATAAAATTT
CCGGCAACATTGCTCtggattttgacgtcaatttgaaatttcttggcAAG
ACATTAGCTGTTGAAGGGAAATCGACACAAGCTGAATACAACCTAACTTC
TTCAGGCAAGAGGGATGCTACGCTGAAGTTAACAACATCAGTCAATCAAA
TAAAATTCCAATCACCAAATGCTGCTATCAGATTCAGCCCACGAGCGAAA
TCAAAGCTTTCTATTGAAGTTCCAATGTTAGCAACTGGTGGACAAATTAG
ATCTATCTCAAATGAAAACGCTTTAAAAACTTACTCACGATATCTCACTA
GAGCTGAACGGAATAGTCAAGGTGTTGGAAACCTTCTTGCAACTTTAGAT
CAAAAGCTAGCTGATATTTGGAGTAGTAAAACAACCGAATATTTCAAGCA
TCTTGGCAATTTTAATACTTTTGTAATGATGGGACTTGATTCGACAAACT
ACTATGAAGCAATTAATACATTACAGCCGGTGAAGGAGTCTTACATAAAC
TTCAAATCCTTTGCCAACGTTTTGGTGGAGAATTTCAAAAACGAAAACGC
CAATCAGAGATTAGTCTTGGCATTAAGAAATGTTTTAAGAGCACTCTCAA
GAACAGACCAACTGGAAATCCTCCCTCAGTTAGAACCAATCAAATTCGTC
GACGTCAATGGGTTGCAGATGAAATATTCTGGTGGATTATGTATTTATCA
ACTCTGCTTTCCATCCATGGGCTCCATTGAAATCGATTCTCCTTTCAATA
AGAACCATATTACCATTAAATCAAACCTGACGACTTTTAATGCAAGCAGT
CGTCTTCATTTTACCGACAAAGATAGCCTTCAGATCAATATTGACAAACA
CATCGGAACTTTTACTGCAACATTGACTGGAAATCTCAAAGTGTTTGACA
AGGTCTTTTCAATTCAGTTTTCCTTTGACCAGGACAAATTCGCATATTCT
TCAACCATTTCCGTTGAAGGATTTCCATCCACTGGCTTCACTgtgagcaa
aacaaaacaaatttccaATGTGCAATGGGAAGACaaactcttgaaacaaa
actCTTACAAGATCGAGCTTCAATAGCTTTCCAAAAGATCTCCGAAACCA
CCAATACAAGATTAGACTTGATTAAGCAAAGAAAATCAGAAAGTCAACAG
AAATACCAGAGCCAAATGGATGAAGTCAAACGTGCCAGGGAAAGATCTGA
AAAAGCTACCCTTGAATTCAACAAAAAGAACAGTGATTATAAAGCCAAAT
TACTTGATTACCAAAAAGCACAGAATCGATATTCGTCACTTTTGAAGCAA
AATGCAAGTTTACTTTTGATCGAGAGAGACGTATCCACCATTTGTTCATT
GATGAAATGTCAGGATAAATGCATATAATGCGATATCTGTCAAAAACCAG
TCAAGATACCGACAAAGCAGTGGGATTGTAACACAAAGATTGAGACCGTC
CGAACCAGTCAACTGGTGGAAACAGACGTCACTTGCCAAGAaaccaaata
ttttttcatcccAATCTATACAGGAGACTGTGAGGAGGACCCACGAACAC
GAGGTTACCGTAAACAACAAGAGGCTGAATATTTAAGTACCGTTGCCCGT
GGTTCTTCCGTTGGTGCCATGATTGGTTCGGTCATTCCTGGAATCGGGTC
TGTTCTTGGTGGTATCATTGGAGGTATTATTGGAGCTATTGGCGGATTAT
TCTCATCGTGTGACGAATCTTACGAAGTCATCACAAAAAAAACAGTCAAC
AGGTGGCCTTGTAAGAACTGGACCATGCAAGTTGTAACCACCAAGGTCCC
AAAAACCAAGTGCGATTTGCAGGAGATACTGGTCAATGGAGGATTCAGCG
ATCCTGAACAATGCAATTGTCGACAGGAAGAATGTTCAGTCAAAGCGACC
GATTATTCTTGCATCAAGAAGAACAAAGATTGTCAGACAGAAAGAAAAGA
GAGATTAGAGAAGTTGGGAAAAGGATCACGTCTACATATTTACTTCAAAC
AGTTGTCTAGTAATATAGATCGATTGGAAGATGAAACTGATTTACTTTTC
AGTGAAGCTGAAAGAACAAGAAAAGATAAAGATTTCGCTATCAATGCACT
GAACAGAACGATCAACGGTCTTCGAGTTGCTGAACAAGAATCAAAACAAG
CCAACAAAAGTCAAGATAATCAACAAGATATTTTGAGAAAGGAGATATGT
CTTTATGACAAGTACAACGTTAACAACCAGCAGCTTCCATTAGTGATCGA
GAAATTGTCGTTGAATAACAAACTACCAATCATTGACAACATTCAAATCA
TCGCAAAAGTGAAAGAACTCTCCAGTGGAAAGACACAAGATGTTGCTTTC
GTTTTCCAGTTGGATGACCCTGAAAGTTCTATTGAAGCAGCATCTCGAAA
GATTCTTTACTCAGTTCTTTGTGAAAGTTCTCGAAAACGAAGATCTCTTG
ATGGTGATGTTCTCGACGAGGACCACATCCTTGCATTCACGTCATGGGAT
GTGAGACAAAattcaacaattgctgaaaaatCTTGCATGACATTCAGAAC
AACCACTGACTTCATTAAAGATTCATATAAAGAGCTGGTTAACCTGTTAC
ACCAAGGAAACGGTGTCCAAGATTTGACTTCTACTGTATCGACCAGTCTA
TCTCGGTTAAGAAAAGACTTGAATGCTTCGAAAGATACTGATCTCATCTA
CGATAGTCAGTCTAAACTACTTTCGTCCATGCATTCTGAAATCAACGGAT
ACCAGAACCGATCTGATATTCCAAAGCTATTGGAAACGTGGAAAGAAAAA
GTCGAGATTTATACTGCGGAAAATAATTTCACAGTTTGTTTTGGTTTCCA
TGATTGTTTAGAAACCGCTCTTGAAAGTTTGGAGAACCTACCTTTTGTTT
CTGTACAGCATTTACAGGTCTACAAAAATACGATGGTAAAATTAAGAGCT
GTATCGAACGAGATCATCAATACCAACGCAGGAGAATCTAGCTTTGGAGA
TCTTTTCAATAAGACATCAACATTCGATACACTTCTAAGTTCTTTGATTG
ACACAAGTTTGCACTGTTCAAAGAAACCTGAAGTTAAAGCGAATGGGGAA
ACCGAATTCCATGCTCACTCTGGAAACTCAGTTGAGCTCGAGTGTGGTGA
AGTTAACAGTGCACTACCGGTGAAATACAACTGGAAAATTCATGGTCAAT
TCATTGATGGTGCTTATGAGTCCAACTTGAAGTTTGAAGCAACTCTTGCG
AAAGCTGGTGTTTATAGCTGTGTTGTTACTTCTTCAGTTGGTCAAACAGA
ATCTAATGGAATCTTGGTTCATGTTTTTGAATCTCCAAAAATACTTTCAG
AACCTGAAGATGTCGAACTTTTCCAGTTGAACAACAATGAAAATGCAACT
TTTATTTGTGATGTTTCTGGCTATCCTTTACCCAACATTACATGGTACTA
TCAGACCTTCCACCACAACGATCAAGCCAAATTACCCAATGATGAACCAG
AGCTGGTCCTTGAGAATCTCACCAAAGCTGACAATGGTTATTACTTCTGC
AAAGCAACAAATGAATATGGTTCCATCACCAGCCGAAAAGCAAAACTAGA
TATTCTGAAAACTGAGCTCCCGAGACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_482:379364..384151+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068270 ID=TCONS_00068270|Name=TCONS_00068270|organism=Clytia hemisphaerica|type=transcript|length=4788bp|location=Sequence derived from alignment at scaffold_482:379364..384151+ (Clytia hemisphaerica)
ATGAAATCTTTTGATGGAAGATTCAAAGGAAAAGGATTCATGACATTGGA
AAATTCTGATAAGGTAAGATGACCGATTTCAGTTATGATTGGTCCCAATC
TCTTGCCTGCTTTAATCACGTCACCTATGGACGccaaagaattttatttt
ctggtGCTATATATCAAGAAGCATCACAAAGCGACTAGCAGCCTACTGCA
TCAAGTGTGAAAGAACTTTGTTCACTAAAAAGATGCGTCAATAAAATCAT
AAGTTTAACTAAACTATATCAAAGCAGTTGTATGTTTCTTTCACTTTAGT
TTTTCACTCGAATGTTTAATTCCCAAAATAAAATTTCCGGCAACATTGCT
CtggattttgacgtcaatttgaaatttcttggcAAGACATTAGCTGTTGA
AGGGAAATCGACACAAGCTGAATACAACCTAACTTCTTCAGGTAAATTAT
TCGTGTTTTTCTGATCTTTAAAATGATTTAGATATCATCCTTGTATGAAG
GGAACAACTTTTCATAACTCTTTTGATAATACATCCCTTTACATATTTTG
TATTTCAGGCAAGAGGGATGCTACGCTGAAGTTAACAACATCAGTCAATC
AAATAAAATTCCAATCACCAAATGCTGCTATCAGATTCAGCCCACGAGCG
AAATCAAAGCTTTCTATTGAAGTTCCAATGTTAGCAACTGGTGGACAAAT
TAGATCTATCTCAAATGAAAACGCTTTAAAAACTTACTCACGATATCTCA
CTAGAGCTGAACGGAATAGTCAAGGTGTTGGAAACCTTCTTGCAACTTTA
GATCAAAAGCTAGCTGATATTTGGAGTAGTAAAACAACCGAATATTTCAA
GCATCTTGGCAATTTTAATACTTTTGTAATGATGGGACTTGATTCGACAA
ACTACTATGAAGCAATTAATACATTACAGCCGGTGAAGGAGTCTTACATA
AACTTCAAATCCTTTGCCAACGTTTTGGTGGAGAATTTCAAAAACGAAAA
CGCCAATCAGAGATTAGTCTTGGCATTAAGAAATGTTTTAAGAGCACTCT
CAAGAACAGACCAACTGGAAATCCTCCCTCAGTTAGAACCAATCAAATTC
GTCGACGTCAATGGGTTGCAGATGAAATATTCTGGTGGATTATGTATTTA
TCAACTCTGCTTTCCATCCATGGGCTCCATTGAAATCGATTCTCCTTTCA
ATAAGAACCATATTACCATTAAATCAAACCTGACGACTTTTAATGCAAGC
AGTCGTCTTCATTTTACCGACAAAGATAGCCTTCAGATCAATATTGACAA
ACACATCGGAACTTTTACTGCAACATTGACTGGAAATCTCAAAGTGTTTG
ACAAGGTCTTTTCAATTCAGTTTTCCTTTGACCAGGACAAATTCGCATAT
TCTTCAACCATTTCCGTTGAAGGATTTCCATCCACTGGCTTCACTgtgag
caaaacaaaacaaatttccaATGTGCAATGGGAAGACaaactcttgaaac
aaaactCTTACAAGATCGAGCTTCAATAGCTTTCCAAAAGATCTCCGAAA
CCACCAATACAAGATTAGACTTGATTAAGCAAAGAAAATCAGAAAGTCAA
CAGAAATACCAGAGCCAAATGGATGAAGTCAAACGTGCCAGGGAAAGATC
TGAAAAAGCTACCCTTGAATTCAACAAAAAGAACAGTGATTATAAAGCCA
AATTACTTGATTACCAAAAAGCACAGAATCGATATTCGTCACTTTTGAAG
CAAAATGCAAGTTTACTTTTGATCGAGAGAGACGTATCCACCATTTGTTC
ATTGATGAAATGTCAGGATAAATGCATATAATGCGATATCTGTCAAAAAC
CAGTCAAGATACCGACAAAGCAGTGGGATTGTAACACAAAGATTGAGACC
GTCCGAACCAGTCAACTGGTGGAAACAGACGTCACTTGCCAAGAaaccaa
atattttttcatcccAATCTATACAGGTAAAGATCTCATTTTCGATTTGA
AAATTCATAACATAAAACATGACACAACCAACACAACCCTACCTGCATAG
ATAAACTAGTTGTAGAGGGATTAAACAAAGAAGCCAATCATACTTATAGT
GATAAATGGGGGCTCCAGTCAATTTGAGAACGACCGTATGCGTggacaaa
aaattgaaaaaaatttacagcCTCATCGTGTATCATCTTTTTGTCCTTTC
CAGTTCACGTTGGGAGCCTGTAAGACAGCGAATAGTGGGTTGTCCCAGTA
GTGATAACAATCTTTTTCatagtttttggacctatttaTTCAAGTTGGTA
CAGGAGACTTTCACGACAAAACAATTACCTATTCGTGGTATAAAAACATA
ATTACTAATTAATGTGTTGTTTAAGTCTGTTTTCCTTAAGCAAATGTTCT
TTCACCCCCGTCCACGCTACTGATCTTACCTCGCTCAAtgacattttttc
tttgattctCAGGAGACTGTGAGGAGGACCCACGAACACGAGGTTACCGT
AAACAACAAGAGGCTGAATATTTAAGTACCGTTGCCCGTGGTTCTTCCGT
TGGTGCCATGATTGGTTCGGTCATTCCTGGAATCGGGTCTGTTCTTGGTG
GTATCATTGGAGGTTAGTACAGttaagtctccataactcgaacaagtgcG
GGGAAAATTTATAAGGAATTGATAACTGGAGGGATCATAAAACCTGTTCG
AGATAAGAACCCTGTTTAGCATTTCAATATCAATTGTATATACATCATGT
TTGTGATTACCTCGTTTAGAAAAGAAACTCAAtaacttttcttttgaaat
aaatcAAAGAACATAATTCACCCTTATTTTAGGTATTATTGGAGCTATTG
GCGGATTATTCTCATCGTGTGACGAATCTTACGAAGTCATCACAAAAAAA
ACAGTCAACAGGTGGCCTTGTAAGAACTGGACCATGCAAGTTGTAACCAC
CAAGGTCCCAAAAACCAAGTGCGATTTGCAGGAGATACTGGTCAATGGAG
GATTCAGCGATCCTGAACAATGCAATTGTCGACAGGAAGAATGTTCAGTC
AAAGCGACCGATTATTCTTGCATCAAGAAGAACAAAGATTGTCAGACAGA
AAGAAAAGAGAGATTAGAGAAGTTGGGAAAAGGATCACGTCTACATATTT
ACTTCAAACAGTTGTCTAGTAATATAGATCGATTGGAAGATGAAACTGAT
TTACTTTTCAGTGAAGCTGAAAGAACAAGAAAAGATAAAGATTTCGCTAT
CAATGCACTGAACAGAACGATCAACGGTCTTCGAGTTGCTGAACAAGAAT
CAAAACAAGCCAACAAAAGTCAAGATAATCAACAAGATATTTTGAGAAAG
GAGATATGTCTTTATGACAAGTACAACGTTAACAACCAGCAGCTTCCATT
AGTGATCGAGAAATTGTCGTTGAATAACAAACTACCAATCATTGACAACA
TTCAAATCATCGCAAAAGTGAAAGAACTCTCCAGTGGAAAGACACAAGAT
GTTGCTTTCGTTTTCCAGTTGGATGACCCTGAAAGTTCTATTGAAGCAGC
ATCTCGAAAGATTCTTTACTCAGTTCTTTGTGAAAGTTCTCGAAAACGAA
GATCTCTTGATGGTGATGTTCTCGACGAGGACCACATCCTTGCATTCACG
TCATGGGATGTGAGACAAAattcaacaattgctgaaaaatCTTGCATGAC
ATTCAGAACAACCACTGACTTCATTAAAGATTCATATAAAGAGCTGGTTA
ACCTGTTACACCAAGGAAACGGTGTCCAAGATTTGACTTCTACTGTATCG
ACCAGTCTATCTCGGTTAAGAAAAGACTTGAATGCTTCGAAAGATACTGA
TCTCATCTACGATAGTCAGTCTAAACTACTTTCGTCCATGCATTCTGAAA
TCAACGGATACCAGAACCGATCTGATATTCCAAAGCTATTGGAAACGTGG
AAAGAAAAAGTCGAGATTTATACTGCGGAAAATAATTTCACAGTTTGTTT
TGGTTTCCATGATTGTTTAGAAACCGCTCTTGAAAGTTTGGAGAACCTAC
CTTTTGTTTCTGTACAGCATTTACAGGTCTACAAAAATACGATGGTAAAA
TTAAGAGCTGTATCGAACGAGATCATCAATACCAACGCAGGAGAATCTAG
CTTTGGAGATCTTTTCAATAAGACATCAACATTCGATACACTTCTAAGTT
CTTTGATTGACACAAGTTTGCACTGTTCAAAGAAACCTGAAGTTAAAGCG
AATGGGGAAACCGAATTCCATGCTCACTCTGGAAACTCAGTTGAGCTCGA
GTGTGGTGAAGTTAACAGTGCACTACCGGTGAAATACAACTGGAAAATTC
ATGGTCAATTCATTGATGGTGCTTATGAGTCCAACTTGAAGTTTGAAGCA
ACTCTTGCGAAAGCTGGTGTTTATAGCTGTGTTGTTACTTCTTCAGTTGG
TCAAACAGAATCTAATGGAATCTTGGTTCATGTTTTTGAATCTCCAAAAA
TACTTTCAGAACCTGAAGATGTCGAACTTTTCCAGTTGAACAACAATGAA
AATGCAACTTTTATTTGTGATGTTTCTGGCTATCCTTTACCCAACATTAC
ATGGTACTATCAGACCTTCCACCACAACGATCAAGCCAAATTACCCAATG
ATGAACCAGAGCTGGTCCTTGAGAATCTCACCAAAGCTGACAATGGTTAT
TACTTCTGCAAAGCAACAAATGAATATGGTTCCATCACCAGCCGAAAAGC
AAAACTAGATATTCTGAAAACTGAGCTCCCGAGACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042611XLOC_042611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068270-exon-scaffold_482-1491911889:379364..379426TCONS_00068270-exon-scaffold_482-1491911889:379364..379426Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1510915933:379364..379426TCONS_00068270-exon-scaffold_482-1510915933:379364..379426Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1575043694:379364..379426TCONS_00068270-exon-scaffold_482-1575043694:379364..379426Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1491911889:379663..379804TCONS_00068270-exon-scaffold_482-1491911889:379663..379804Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1510915933:379663..379804TCONS_00068270-exon-scaffold_482-1510915933:379663..379804Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1575043694:379663..379804TCONS_00068270-exon-scaffold_482-1575043694:379663..379804Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1491911889:379922..381339TCONS_00068270-exon-scaffold_482-1491911889:379922..381339Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1510915933:379922..381339TCONS_00068270-exon-scaffold_482-1510915933:379922..381339Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1575043694:379922..381339TCONS_00068270-exon-scaffold_482-1575043694:379922..381339Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1491911889:381826..381975TCONS_00068270-exon-scaffold_482-1491911889:381826..381975Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1510915933:381826..381975TCONS_00068270-exon-scaffold_482-1510915933:381826..381975Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1575043694:381826..381975TCONS_00068270-exon-scaffold_482-1575043694:381826..381975Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1491911889:382196..384151TCONS_00068270-exon-scaffold_482-1491911889:382196..384151Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1510915933:382196..384151TCONS_00068270-exon-scaffold_482-1510915933:382196..384151Clytia hemisphaericaexon
TCONS_00068270-exon-scaffold_482-1575043694:382196..384151TCONS_00068270-exon-scaffold_482-1575043694:382196..384151Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:379364..384151 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0605837	1.06342	1.42271	0.87542	1.49486	2.04983	6.1588	3.91862	1.30768	7.60822	8.77395	0	0	1.04984	0.514529	6.56302	11.9005	1.23682	0.738417	0	0.235561	9.25576	4.54995	3.53214	4.65067	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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