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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068264 ID=TCONS_00068264|Name=TCONS_00068264|organism=Clytia hemisphaerica|type=transcript|length=1374bp
aaataaaGCAGAAGCAAAACGGCGCGTTTTTCATATAATTGCAAGAGATC
AAAAATAGCTCGGAATGATTTTTAAGAGTACTTAGAAGAATTATTATACA
CAGTgaatttttgttaattatgGATTGGCGATCCTACGCAATCTTGTTGT
TTTGTTTCTATTTTCTATATTTACCGTTAGTTGCAAAGACGCATTTATTA
CCAGAGGACTTGATCAGTGATGACGCTGAGCAGttagaaagagaaaaaag
agaCGGATTTTTCGAACgcattttttcgtttttcaataataaacatgaaa
aagaagaggaagaactcgaaaaagaagaagatgaatcacaaaatgaaaaa
gttcaAGATGTTCTTAAAGACGATGACATAACAGCATCCTTCCGTGGTTA
TTCATTGCCGGAGATCAATCTTCCCTTCACCGATTCCTCAACCCGAGAAA
CTTTATTTACAGATTCAACTTGGGAGGCGAAACCTACTTCTTATACGTCA
ACTCTTCAAAATACAAAGATCTTTACAGAATCTACACAAGTCGGCTCGTC
TAGTTCAATGAGTTTGCCTACTTTGAAATTAAGCACGGCAAAAACACCAA
AGACAATCCAAATGTTGAACAGTGTTCAAGCTACACCTTATATCGCTTCG
TCCACAGAAGTAATGACGCACACAAAAATCCCAGAACCTACTTCATCACA
ATTTATAAGGAGTTCCATCAAAATTTCCCCAACTCCTTCAAGGACTATTG
AGATCTCTACAACTTCAATGGCAGAATTGCCGGCTTTTGTAGATATGAAC
GTTGTTTTAGCCGATGGACCTAGGATACCTGATGAACGAGCTTATGGCGA
TGTTTTTGCGCAAGCACCCCAAGAAAATACCGTTGAAAAATCAGCTCAAG
CTAAGagcGTGCAATTTCTGTTCTCAAATTTATTGATACCAGTGGTGTCT
GGTTTATTTGGTGCGTTTTGCTTCAGTATCGCTGTCTTGATCATGAGGTG
CATCAAAAGAAGAAACTTGAGAAAAGTTAATTACTATGGAGGAAAGccaG
AGACTCGTTTGTACGGATTAGACCATATGGGGCTGTTATCGGACATGAGT
TCAGACGAAGAATGAAAAGCGATGATAAATGATCTCCTATAATTGGTTTC
CTTATCAACACAAAACTATAAATTATAAATAGCTAATGATAAAAATTTCT
TACGTTGCATTTTattaaataaaacaatttattttaaaaattcaactGTG
TATATACAATTTTACAATATCAATAAATTCTTAATTCTTAACAATACTTT
GTCTATGACTAGTATGAAGAATTCACCCGATATTCCGGCTtcgttttcga
aaattttctccaGCGTGAAAAGTG Run BLAST on NCBI protein sequence of TCONS_00068264-protein >TCONS_00068264-protein ID=TCONS_00068264-protein|Name=TCONS_00068264-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MDWRSYAILLFCFYFLYLPLVAKTHLLPEDLISDDAEQLEREKRDGFFER
IFSFFNNKHEKEEEELEKEEDESQNEKVQDVLKDDDITASFRGYSLPEIN
LPFTDSSTRETLFTDSTWEAKPTSYTSTLQNTKIFTESTQVGSSSSMSLP
TLKLSTAKTPKTIQMLNSVQATPYIASSTEVMTHTKIPEPTSSQFIRSSI
KISPTPSRTIEISTTSMAELPAFVDMNVVLADGPRIPDERAYGDVFAQAP
QENTVEKSAQAKSVQFLFSNLLIPVVSGLFGAFCFSIAVLIMRCIKRRNL
RKVNYYGGKPETRLYGLDHMGLLSDMSSDEE Run BLAST on NCBI transcript from alignment at scaffold_482:353053..356600+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068264 ID=TCONS_00068264|Name=TCONS_00068264|organism=Clytia hemisphaerica|type=transcript|length=3548bp|location=Sequence derived from alignment at scaffold_482:353053..356600+ (Clytia hemisphaerica)
aaataaaGCAGAAGCAAAACGGCGCGTTTTTCATATAATTGCAAGAGATC
AAAAATAGCTCGGAATGATTTTTAAGAGTACTTAGAAGAATTATTATACA
CAGTgaatttttgttaattatgGATTGGCGATCCTACGCAATCTTGTTGT
TTTGTTTCTATTTTCTATATTTACCGTTAGTTGCAAAGACGCATTTATTA
CCAGAGGACTTGATCAGTGATGACGCTGAGCAGttagaaagagaaaaaag
agaCGGATTTTTCGAACgcattttttcgtttttcaataataaacatgaaa
aagaagaggaagaactcgaaaaagaagaagatgaatcacaaaatgaaaaa
gttcaAGATGTTCTTAAAGACGATGACATAACAGCATCCTTCCGTGGTTA
TTCATTGCCGGAGATCAATCTTCCCTTCACCGATTCCTCAACCCGAGAAA
CTTTATTTACAGATTCAACTTGGGAGGCGAAACCTACTTCTTATACGTCA
ACTCTTCAAAATACAAAGATCTTTACAGAATCTACACAAGTCGGCTCGTC
TAGTTCAATGAGTTTGCCTACTTTGAAATTAAGCACGGCAAAAACACCAA
AGACAATCCAAATGTTGAACAGTGTTCAAGCTACACCTTATATCGCTTCG
TCCACAGAAGTAATGACGCACACAAAAATCCCAGAACCTACTTCATCACA
ATTTATAAGGAGTTCCATCAAAATTTCCCCAACTCCTTCAAGGACTATTG
AGATCTCTACAACTTCAATGGCAGAATTGCCGGCTTTTGTAGATATGAAC
GTTGTTTTAGCCGATGGACCTAGGATACCTGATGAACGAGCTTATGGCGA
TGTTTTTGGTAAGGTTATTTCACTCTTTACGGCATCTGGGTATTTTCTTC
TTAACAACCCTGTCTCCTTAACCCTGTGAAAATATTTTCGCCCGATACCA
ATTGTTTTTTACTCGCCCAATACCAATTGTTTTTTACTTAGTGTCAAATG
ACCAGGCCATACTCACTAGAAAATCTACAAATTAAGTAGAtgtataaatt
ttcttaattcttCGGATGTCCAGTTGGTTCGACtgacaattcctgcatta
ataacacgcatgcgtaatttgtcgttcgtttagaccacatgtagttattt
cccgtgataaacaaagagaaatgaatcgctaggggtggcacagtcacttt
cggtcaggGTTGTAGATGGCAAAATATGAATTTTGTCGTTctcttttgtc
gttttttatgaaatttgtcgttctttttgtctatttttagtaatgcagga
attGTATGATAGAGCCTCTCgtctgtagaattacggcaCTCTTTAATATC
GACATGTAATGTAGAATATAGACTAATTTTGTAGATATTCTAGAACGATT
TCACTTTATGCGTGCTCGAGACTCGAGCTCCAAACTCCTGACCCAAGGAC
TTTTGTAGTGACGAGTAAACAGTTtaactgacgagttaggctaTCTGTCT
AAATCGTTGTTTATCCGGTGTTacgccatccacaaccccgaccgtgTGGC
TCCACCTTATTGTATTTTTCACCCTTACTTGTCAGCGCTAAATTACTCAT
TGTGGTGTATACAATATAGACTCTGTTGTGTAGCAATCTACTATTttgcc
gtaattctacagatgtctgtagaaatatgaaatctacatattttttagaa
taataATTCTATCCGTAAATCTTAAATTTACACCATCTACGTATTCTGTA
GAATTACGTGTGATAATGTGTTGCAAATGACCATTCTGATGAAAACTAAT
AAATATCATATAATCCATCCATTCCTTTATTTCAGCGCAAGCACCCCAAG
AAAATACCGTTGAAAAATCAGCTCAAGCTAAGGTAGGTGATATCCTTTCA
TCTCCTGTTTAATTCTAGGAATAAACAGCTCGACTTGCCAGTCAAAGTTT
CATATTACCGAGTTTGCATTCGAGGTAAAGCGAATGAGACGGTATATAAA
GTTGACATGTCCCTAAACTTGCCGCCCACCTTGCTTGACAatggtaaaaa
caccaaaatacagtcgtctgtttaggtgagcaaagatATAGAGCCTACAT
CAACTTATAGACTTTGTTTTATATCGACTTCACTTACTGgtgccctcgat
atcctccgaaaCATTCACTCACTATTATCTTATTGACTTCACAATCATTA
TTTTTGGTTTTATTGTCTCATCCCTGGATAAACTGTTAGGACAATTTCCG
TTGGAGTATTAAATTCCCCATGTCTCAGTGGTCCAGTAATAATGTTTCTC
GTTCCGATCTGAGACATTTTCCCGAGGGAATTAAAGAGTCTTTAATCTTC
TAGGAAACCTTCCCAGTGAGTAGGGCCCTAGTCTCACTGAATCTGTAACT
AAAGGAACTAAAAATCACCTGTgaagctttttattttatttttagagcGT
GCAATTTCTGTTCTCAAATTTATTGATACCAGTGGTGTCTGGTTTATTTG
GTGCGTTTTGCTTCAGTATCGCTGTCTTGATCATGAGGTGCATCAAAAGA
AGAAACTTGAGAAAAGTTAATTACTATGGAGGAAAGGTAAATACTTACTT
ctaacaattttccattgttttgattttagcggcCGCTCTTTCcggtaaaa
aaacggtaggtaaaattCCGGTTCTCGTAAGGAAACCTAatagagaaatg
gtaggtaaagaactccttttaatcataacttcttttcctgataatgaatt
tttgtgaaattttcaggagagatccataaaattatcattgatatcatttt
caaatatctaaatcattttcttaaaagaaataaagaaaatgacaatgttt
acattcctctaaccttccacagtactaaagtgcgcatttttacctaccgt
ttttacGGTGGAACACGGTGGAGTAGtaagactcctaaacggtgtattga
aaGACATcctaaaaaaaagtaaaagcaaaAGATTGGCAAAAGAAGCTAGG
ATATCTAGACTAGCaaatgtttttaattatttaaagaAATATGGTTTTTG
AATTGAGAGATATCTAAATGAAAATATGGGACgaacaaaaagtgaaattt
taagATCTAGAAAATCTCGGCTGTTAATTTGAGAGTTCTTTTCAGGGTCG
AAACCATATCTGGAACTACTATAGCTGAAGTAGCTCAACACTAAAATTGT
AactcaattttatttttcagccaGAGACTCGTTTGTACGGATTAGACCAT
ATGGGGCTGTTATCGGACATGAGTTCAGACGAAGAATGAAAAGCGATGAT
AAATGATCTCCTATAATTGGTTTCCTTATCAACACAAAACTATAAATTAT
AAATAGCTAATGATAAAAATTTCTTACGTTGCATTTTattaaataaaaca
atttattttaaaaattcaactGTGTATATACAATTTTACAATATCAATAA
ATTCTTAATTCTTAACAATACTTTGTCTATGACTAGTATGAAGAATTCAC
CCGATATTCCGGCTtcgttttcgaaaattttctccaGCGTGAAAAGTG Coding sequence (CDS) from alignment at scaffold_482:353053..356600+ >TCONS_00068264 ID=TCONS_00068264|Name=TCONS_00068264|organism=Clytia hemisphaerica|type=CDS|length=3984bp|location=Sequence derived from alignment at scaffold_482:353053..356600+ (Clytia hemisphaerica)
atgGATTGGCGATCCTACGCAATCTTGTTGTTTTGTTTCTATTTTCTATA
TTTACCGTTAGTTGCAAAGACGCATTTATTACCAGAGGACTTGATCAGTG
ATGACGCTGAGCAGttagaaagagaaaaaagagaCGGATTTTTCGAACgc
attttttcgtttttcaataataaacatgaaaaagaagaggaagaactcga
aaaagaagaagatgaatcacaaaatgaaaaagttcaAGATGTTCTTAAAG
ACGATGACATAACAGCATCCTTCCGTGGTTATTCATTGCCGGAGATCAAT
CTTCCCTTCACCGATTCCTCAACCCGAGAAACTTTATTTACAGATTCAAC
TTGGGAGGCGAAACCTACTTCTTATACGTCAACTCTTCAAAATACAAAGA
TCTTTACAGAATCTACACAAGTCGGCTCGTCTAGTTCAATGAGTTTGCCT
ACTTTGAAATTAAGCACGGCAAAAACACCAAAGACAATCCAAATGTTGAA
CAGTGTTCAAGCTACACCTTATATCGCTTCGTCCACAGAAGTAATGACGC
ACACAAAAATCCCAGAACCTACTTCATCACAATTTATAAGGAGTTCCATC
AAAATTTCCCCAACTCCTTCAAGGACTATTGAGATCTCTACAACTTCAAT
GGCAGAATTGCCGGCTTTTGTAGATATGAACGTTGTTTTAGCCGATGGAC
CTAGGATACCTGATGAACGAGCTTATGGCGATGTTTTTGCGCAAGCACCC
CAAGAAAATACCGTTGAAAAATCAGCTCAAGCTAAGagcGTGCAATTTCT
GTTCTCAAATTTATTGATACCAGTGGTGTCTGGTTTATTTGGTGCGTTTT
GCTTCAGTATCGCTGTCTTGATCATGAGGTGCATCAAAAGAAGAAACTTG
AGAAAAGTTAATTACTATGGAGGAAAGccaGAGACTCGTTTGTACGGATT
AGACCATATGGGGCTGTTATCGGACATGAGTTCAGACGAAGAATGAatgG
ATTGGCGATCCTACGCAATCTTGTTGTTTTGTTTCTATTTTCTATATTTA
CCGTTAGTTGCAAAGACGCATTTATTACCAGAGGACTTGATCAGTGATGA
CGCTGAGCAGttagaaagagaaaaaagagaCGGATTTTTCGAACgcattt
tttcgtttttcaataataaacatgaaaaagaagaggaagaactcgaaaaa
gaagaagatgaatcacaaaatgaaaaagttcaAGATGTTCTTAAAGACGA
TGACATAACAGCATCCTTCCGTGGTTATTCATTGCCGGAGATCAATCTTC
CCTTCACCGATTCCTCAACCCGAGAAACTTTATTTACAGATTCAACTTGG
GAGGCGAAACCTACTTCTTATACGTCAACTCTTCAAAATACAAAGATCTT
TACAGAATCTACACAAGTCGGCTCGTCTAGTTCAATGAGTTTGCCTACTT
TGAAATTAAGCACGGCAAAAACACCAAAGACAATCCAAATGTTGAACAGT
GTTCAAGCTACACCTTATATCGCTTCGTCCACAGAAGTAATGACGCACAC
AAAAATCCCAGAACCTACTTCATCACAATTTATAAGGAGTTCCATCAAAA
TTTCCCCAACTCCTTCAAGGACTATTGAGATCTCTACAACTTCAATGGCA
GAATTGCCGGCTTTTGTAGATATGAACGTTGTTTTAGCCGATGGACCTAG
GATACCTGATGAACGAGCTTATGGCGATGTTTTTGCGCAAGCACCCCAAG
AAAATACCGTTGAAAAATCAGCTCAAGCTAAGagcGTGCAATTTCTGTTC
TCAAATTTATTGATACCAGTGGTGTCTGGTTTATTTGGTGCGTTTTGCTT
CAGTATCGCTGTCTTGATCATGAGGTGCATCAAAAGAAGAAACTTGAGAA
AAGTTAATTACTATGGAGGAAAGccaGAGACTCGTTTGTACGGATTAGAC
CATATGGGGCTGTTATCGGACATGAGTTCAGACGAAGAATGAatgGATTG
GCGATCCTACGCAATCTTGTTGTTTTGTTTCTATTTTCTATATTTACCGT
TAGTTGCAAAGACGCATTTATTACCAGAGGACTTGATCAGTGATGACGCT
GAGCAGttagaaagagaaaaaagagaCGGATTTTTCGAACgcattttttc
gtttttcaataataaacatgaaaaagaagaggaagaactcgaaaaagaag
aagatgaatcacaaaatgaaaaagttcaAGATGTTCTTAAAGACGATGAC
ATAACAGCATCCTTCCGTGGTTATTCATTGCCGGAGATCAATCTTCCCTT
CACCGATTCCTCAACCCGAGAAACTTTATTTACAGATTCAACTTGGGAGG
CGAAACCTACTTCTTATACGTCAACTCTTCAAAATACAAAGATCTTTACA
GAATCTACACAAGTCGGCTCGTCTAGTTCAATGAGTTTGCCTACTTTGAA
ATTAAGCACGGCAAAAACACCAAAGACAATCCAAATGTTGAACAGTGTTC
AAGCTACACCTTATATCGCTTCGTCCACAGAAGTAATGACGCACACAAAA
ATCCCAGAACCTACTTCATCACAATTTATAAGGAGTTCCATCAAAATTTC
CCCAACTCCTTCAAGGACTATTGAGATCTCTACAACTTCAATGGCAGAAT
TGCCGGCTTTTGTAGATATGAACGTTGTTTTAGCCGATGGACCTAGGATA
CCTGATGAACGAGCTTATGGCGATGTTTTTGCGCAAGCACCCCAAGAAAA
TACCGTTGAAAAATCAGCTCAAGCTAAGagcGTGCAATTTCTGTTCTCAA
ATTTATTGATACCAGTGGTGTCTGGTTTATTTGGTGCGTTTTGCTTCAGT
ATCGCTGTCTTGATCATGAGGTGCATCAAAAGAAGAAACTTGAGAAAAGT
TAATTACTATGGAGGAAAGccaGAGACTCGTTTGTACGGATTAGACCATA
TGGGGCTGTTATCGGACATGAGTTCAGACGAAGAATGAatgGATTGGCGA
TCCTACGCAATCTTGTTGTTTTGTTTCTATTTTCTATATTTACCGTTAGT
TGCAAAGACGCATTTATTACCAGAGGACTTGATCAGTGATGACGCTGAGC
AGttagaaagagaaaaaagagaCGGATTTTTCGAACgcattttttcgttt
ttcaataataaacatgaaaaagaagaggaagaactcgaaaaagaagaaga
tgaatcacaaaatgaaaaagttcaAGATGTTCTTAAAGACGATGACATAA
CAGCATCCTTCCGTGGTTATTCATTGCCGGAGATCAATCTTCCCTTCACC
GATTCCTCAACCCGAGAAACTTTATTTACAGATTCAACTTGGGAGGCGAA
ACCTACTTCTTATACGTCAACTCTTCAAAATACAAAGATCTTTACAGAAT
CTACACAAGTCGGCTCGTCTAGTTCAATGAGTTTGCCTACTTTGAAATTA
AGCACGGCAAAAACACCAAAGACAATCCAAATGTTGAACAGTGTTCAAGC
TACACCTTATATCGCTTCGTCCACAGAAGTAATGACGCACACAAAAATCC
CAGAACCTACTTCATCACAATTTATAAGGAGTTCCATCAAAATTTCCCCA
ACTCCTTCAAGGACTATTGAGATCTCTACAACTTCAATGGCAGAATTGCC
GGCTTTTGTAGATATGAACGTTGTTTTAGCCGATGGACCTAGGATACCTG
ATGAACGAGCTTATGGCGATGTTTTTGCGCAAGCACCCCAAGAAAATACC
GTTGAAAAATCAGCTCAAGCTAAGagcGTGCAATTTCTGTTCTCAAATTT
ATTGATACCAGTGGTGTCTGGTTTATTTGGTGCGTTTTGCTTCAGTATCG
CTGTCTTGATCATGAGGTGCATCAAAAGAAGAAACTTGAGAAAAGTTAAT
TACTATGGAGGAAAGccaGAGACTCGTTTGTACGGATTAGACCATATGGG
GCTGTTATCGGACATGAGTTCAGACGAAGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068264-exon-scaffold_482-1491911889:353053..353910 | TCONS_00068264-exon-scaffold_482-1491911889:353053..353910 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1510915933:353053..353910 | TCONS_00068264-exon-scaffold_482-1510915933:353053..353910 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1575043694:353053..353910 | TCONS_00068264-exon-scaffold_482-1575043694:353053..353910 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1491911889:354888..354934 | TCONS_00068264-exon-scaffold_482-1491911889:354888..354934 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1510915933:354888..354934 | TCONS_00068264-exon-scaffold_482-1510915933:354888..354934 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1575043694:354888..354934 | TCONS_00068264-exon-scaffold_482-1575043694:354888..354934 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1491911889:355498..355638 | TCONS_00068264-exon-scaffold_482-1491911889:355498..355638 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1510915933:355498..355638 | TCONS_00068264-exon-scaffold_482-1510915933:355498..355638 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1575043694:355498..355638 | TCONS_00068264-exon-scaffold_482-1575043694:355498..355638 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1491911889:356273..356600 | TCONS_00068264-exon-scaffold_482-1491911889:356273..356600 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1510915933:356273..356600 | TCONS_00068264-exon-scaffold_482-1510915933:356273..356600 | Clytia hemisphaerica | exon |
| TCONS_00068264-exon-scaffold_482-1575043694:356273..356600 | TCONS_00068264-exon-scaffold_482-1575043694:356273..356600 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:353053..356600 + |
Blast
The following BLAST results are available for this feature:
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