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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068252 ID=TCONS_00068252|Name=TCONS_00068252|organism=Clytia hemisphaerica|type=transcript|length=620bp
TAAGAAGAtctcaacaaaaaacaaaaatgaagaccATCATCTTGATCGCC
ATCATCGCTGTTGCAAGCGCAAGTCACTTCTACAGCCCATGTGCACACAG
TTTGTGTGACCATAAAGAAAACGGAGCCATCTTTGGATTGAGCAAACACC
AACCTGATGTTTTCGTCCAATGCAGCAATGGAAAACCAATTTGTCAACGA
TGCCCAGCTCACCAAGAATTTAACGAAAAGTTCAACGTTTGCGTTCGACG
TACAGTGAAGCCAGCATGTAAAGGTCATCACTGCAAACCACACCCACACA
AACCACACAAGAAAAATGACTGCCCAAAATCTTTATGCGCTGATTACCCA
CACAGTGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGT
TCAATGTGTTGCTGGAAAACCATTCTGCAGAAAATGTCCACATGGATTGA
TCTTTGACAACAAAGTCAAAGTCTGCGTTTTCCCACCAAAGAAACACTAA
GATTTTATACTTGAAATATATGCTAAATGTttaacatgttttcatttttt
caatactattgaatttattttatgcaaaaatgtaATACTTGctttttaac
aaataaatttCCAAATCCTC Run BLAST on NCBI protein sequence of TCONS_00068252-protein >TCONS_00068252-protein ID=TCONS_00068252-protein|Name=TCONS_00068252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
RRSQQKTKMKTIILIAIIAVASASHFYSPCAHSLCDHKENGAIFGLSKHQ
PDVFVQCSNGKPICQRCPAHQEFNEKFNVCVRRTVKPACKGHHCKPHPHK
PHKKNDCPKSLCADYPHSDYVVFRYPHKPTYYVQCVAGKPFCRKCPHGLI
FDNKVKVCVFPPKKH Run BLAST on NCBI transcript from alignment at scaffold_482:85996..89440+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068252 ID=TCONS_00068252|Name=TCONS_00068252|organism=Clytia hemisphaerica|type=transcript|length=3445bp|location=Sequence derived from alignment at scaffold_482:85996..89440+ (Clytia hemisphaerica)
TAAGAAGAtctcaacaaaaaacaaaaatgaagaccATCATCTTGATCGCC
ATCATCGCTGGTAAGTTTTTTTATCCTGAATCCCCTCAAGCTTACTAACT
ACTAACTCTTCGATTTTCAAAACACTCAGGTGAAACAAggcatctatata
ttaatagccgtagtctgtatgtgtgtttgttttttgttggtttgtttttt
gttggtttgttttttgtgtgtcactttcgttttcgcaagcaatgttttgt
tcttttaaaagatgacttttattttgttctNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaacaaaagaaattttt
taaacagaatctgttaaagaaaagaacaaatataaaataaaacacaagaa
tcacataacaagtttgttagaacaacagcaacatttaacatacattcaaa
aggcggtaaaaactagaattctttttTCGTAAAAACGGACCTTTAAACAT
Atatgtcgataattatattgctgtaaatctaagtcattgttgaatttgaa
aaattattgaacttatgacgaagttattttataaaaaacaatataaaatt
cccggataaaattgcgctatctatcacgcttttttgtctgcgtgtcctag
ctgccttccgggggactatggttgcgagctgactttcggccctgcccctc
ggacccttagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
acatcaagaactacggcaaatataacgcaagcgaagcgagaaaaaaaatc
taattgcagagccgtctcggacgtcgctggtcgccggtatagtgtaattt
gggaatgatgcccatttttctttctgatcatttttgccacaaaaatcttt
ttcaaaatatggttaaaagatacgtcacccgggtgGGATAGAgtaaaact
ttgaagagaattttttcccttaaattttgatttcatcgtgtttaagccac
cttcccaacatctcaaaggactttaaatgcgttcagcaaacagctaaacc
ggcgtgcgacgccgggtaccggctagtattaTATATTAACGAGAGGATTT
CAAAAAGTGCTGGctcaaaaatttacattaagtCAATCTGaagatatcgg
tcaaaaactgattttgacgatataaaatacatcgaaaaaacacgtcatga
gtaagattcaaatgacatcattattgaaaaacggcgataacttcaattct
attaatgctcgggtaacttaatgcatgtcccagaattgcattaatttttc
cgccccagttccagtccctaaaccataacaaactctacatttttggaagc
gtattttggatgtagaataccgtattcggtgtaacttaaattctttctca
gtataattagagatatcttaagaaaaccttAAGTAACCTTAAGTTACCCG
AGTGCAATCAACatcaaattttgactggagttgtaaattaacgattctga
aatatttgttaataaaaatttgacccagcacttttcgatatcctctcgtt
gatacgattCGTTTGAGCTTTATATGAAAGTTAAGGGATAATGGGAAGCG
ATGTGCGTCatgcaaaatttattttggacatgccttgtttcaccccaGCA
TAAGAGACAACGAaaagaattcaattttttttcttcaaagatttACCTTC
AACCCATGactttaatgaaatttcttttcttctcaTTTTTAGTTGCAAGC
GCAAGTCACTTCTACAGCCCATGTAAGTAACTTTACTTTAACAAATCCAT
TCCGAATCGATGTTTTGATGAGATACAAGTCAAGAAGCTTGAGTGATTTG
TTTAACAAGTCAAGGCGTCAATGCAATATTCATACTGTATCCAAAATACG
ATTTTCTAATTCTCAATTTTAGGTGCACACAGTTTGTGTGACCATAAAGA
AAACGGAGCCATCTTTGGATTGAGCAAACACCAACCTGATGTTTTCGTCC
AATGCAGCAATGGAAAACCAATTTGTCAACGATGCCCAGCTCACCAAGAA
TTTAACGAAAAGTTCAACGTTTGCGTTCGACGTACAGTGAAGCCAGCATG
TAAAGGTCATCACTGCAAACCACACCCACACAAACCACACAAGAAAAATG
ACTGTAAGAAGCGTTGAACTTTTTAGCAACCCAAATATTCGCTCtaagaa
attggaaaaagcaaTTCTCTGAAACTAGCATCTTTCTAAAAAGGACtcca
ttttagattttcatagttttacacCCATTCAAGAAAACTATCTGCAATGA
AGTAATCTTCTTCGAAAATTATTATTCTACTTACCTTCTCTTTTAGGCCC
AAAATCTTTATGCGCTGATTACCCACACAGTGACTACGTTGTCTTCCGAT
ACCCACACAAACCAACTTATTACGTTCAATGTGTTGCTGGAAAACCATTC
TGCAGAAAATGTCCACATGGATTGATCTTTGACAACAAAGTCAAAGTCTG
CGTTTTCCCACCAAAGAAACACTAAGATTTTATACTTGAAATATATGCTA
AATGTttaacatgttttcattttttcaatactattgaatttattttatgc
aaaaatgtaATACTTGctttttaacaaataaatttCCAAATCCTC Coding sequence (CDS) from alignment at scaffold_482:85996..89440+ >TCONS_00068252 ID=TCONS_00068252|Name=TCONS_00068252|organism=Clytia hemisphaerica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_482:85996..89440+ (Clytia hemisphaerica)
AGAAGAtctcaacaaaaaacaaaaatgaagaccATCATCTTGATCGCCAT
CATCGCTGTTGCAAGCGCAAGTCACTTCTACAGCCCATGTGCACACAGTT
TGTGTGACCATAAAGAAAACGGAGCCATCTTTGGATTGAGCAAACACCAA
CCTGATGTTTTCGTCCAATGCAGCAATGGAAAACCAATTTGTCAACGATG
CCCAGCTCACCAAGAATTTAACGAAAAGTTCAACGTTTGCGTTCGACGTA
CAGTGAAGCCAGCATGTAAAGGTCATCACTGCAAACCACACCCACACAAA
CCACACAAGAAAAATGACTGCCCAAAATCTTTATGCGCTGATTACCCACA
CAGTGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTTC
AATGTGTTGCTGGAAAACCATTCTGCAGAAAATGTCCACATGGATTGATC
TTTGACAACAAAGTCAAAGTCTGCGTTTTCCCACCAAAGAAACACTAAAG
AAGAtctcaacaaaaaacaaaaatgaagaccATCATCTTGATCGCCATCA
TCGCTGTTGCAAGCGCAAGTCACTTCTACAGCCCATGTGCACACAGTTTG
TGTGACCATAAAGAAAACGGAGCCATCTTTGGATTGAGCAAACACCAACC
TGATGTTTTCGTCCAATGCAGCAATGGAAAACCAATTTGTCAACGATGCC
CAGCTCACCAAGAATTTAACGAAAAGTTCAACGTTTGCGTTCGACGTACA
GTGAAGCCAGCATGTAAAGGTCATCACTGCAAACCACACCCACACAAACC
ACACAAGAAAAATGACTGCCCAAAATCTTTATGCGCTGATTACCCACACA
GTGACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTTCAA
TGTGTTGCTGGAAAACCATTCTGCAGAAAATGTCCACATGGATTGATCTT
TGACAACAAAGTCAAAGTCTGCGTTTTCCCACCAAAGAAACACTAAAGAA
GAtctcaacaaaaaacaaaaatgaagaccATCATCTTGATCGCCATCATC
GCTGTTGCAAGCGCAAGTCACTTCTACAGCCCATGTGCACACAGTTTGTG
TGACCATAAAGAAAACGGAGCCATCTTTGGATTGAGCAAACACCAACCTG
ATGTTTTCGTCCAATGCAGCAATGGAAAACCAATTTGTCAACGATGCCCA
GCTCACCAAGAATTTAACGAAAAGTTCAACGTTTGCGTTCGACGTACAGT
GAAGCCAGCATGTAAAGGTCATCACTGCAAACCACACCCACACAAACCAC
ACAAGAAAAATGACTGCCCAAAATCTTTATGCGCTGATTACCCACACAGT
GACTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTTCAATG
TGTTGCTGGAAAACCATTCTGCAGAAAATGTCCACATGGATTGATCTTTG
ACAACAAAGTCAAAGTCTGCGTTTTCCCACCAAAGAAACACTAAAGAAGA
tctcaacaaaaaacaaaaatgaagaccATCATCTTGATCGCCATCATCGC
TGTTGCAAGCGCAAGTCACTTCTACAGCCCATGTGCACACAGTTTGTGTG
ACCATAAAGAAAACGGAGCCATCTTTGGATTGAGCAAACACCAACCTGAT
GTTTTCGTCCAATGCAGCAATGGAAAACCAATTTGTCAACGATGCCCAGC
TCACCAAGAATTTAACGAAAAGTTCAACGTTTGCGTTCGACGTACAGTGA
AGCCAGCATGTAAAGGTCATCACTGCAAACCACACCCACACAAACCACAC
AAGAAAAATGACTGCCCAAAATCTTTATGCGCTGATTACCCACACAGTGA
CTACGTTGTCTTCCGATACCCACACAAACCAACTTATTACGTTCAATGTG
TTGCTGGAAAACCATTCTGCAGAAAATGTCCACATGGATTGATCTTTGAC
AACAAAGTCAAAGTCTGCGTTTTCCCACCAAAGAAACACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068252-exon-scaffold_482-1491911889:85996..86055 | TCONS_00068252-exon-scaffold_482-1491911889:85996..86055 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1510915933:85996..86055 | TCONS_00068252-exon-scaffold_482-1510915933:85996..86055 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1575043694:85996..86055 | TCONS_00068252-exon-scaffold_482-1575043694:85996..86055 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1491911889:88538..88567 | TCONS_00068252-exon-scaffold_482-1491911889:88538..88567 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1510915933:88538..88567 | TCONS_00068252-exon-scaffold_482-1510915933:88538..88567 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1575043694:88538..88567 | TCONS_00068252-exon-scaffold_482-1575043694:88538..88567 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1491911889:88718..88948 | TCONS_00068252-exon-scaffold_482-1491911889:88718..88948 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1510915933:88718..88948 | TCONS_00068252-exon-scaffold_482-1510915933:88718..88948 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1575043694:88718..88948 | TCONS_00068252-exon-scaffold_482-1575043694:88718..88948 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1491911889:89142..89440 | TCONS_00068252-exon-scaffold_482-1491911889:89142..89440 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1510915933:89142..89440 | TCONS_00068252-exon-scaffold_482-1510915933:89142..89440 | Clytia hemisphaerica | exon |
| TCONS_00068252-exon-scaffold_482-1575043694:89142..89440 | TCONS_00068252-exon-scaffold_482-1575043694:89142..89440 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:85996..89440 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002557 | Chitin-bd_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005576 | extracellular region |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006030 | chitin metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008061 | chitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006030 |
chitin metabolic process |
| cellular_component |
GO:0005576 |
extracellular region |
| molecular_function |
GO:0008061 |
chitin binding |
Blast
The following BLAST results are available for this feature:
|
