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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068244 ID=TCONS_00068244|Name=TCONS_00068244|organism=Clytia hemisphaerica|type=transcript|length=2594bp
TGTTAGTTCAATCCCAAACcggatcataccaaagatttcaaaaatagtac
TTGGTGCCATCTGAAGAGATGGATCAAGAGGAGAAAGCAACGATAACGGA
TCTTATTTTGTGTATCGGAAACATCCCTTATACTCTCCGGAATTTTTTTG
ATCTGACTATTATGAAACGACTTCGCATATAGATTTCGAACAGGAAAGCG
TATATTTTCAACCTAAAAATTTACTTTCGTTCACTCTTTGTTTCCACAGG
ATGCAGATGCGGAATACATTGACCAAGCAACCGTTATTCTGAACAAACTC
AAACTTAACGATATCCTCGAGAAAGTCTTGGAATACGAACGTGAACGAAA
GATAGCTTTACTGCGCAGTCGCAGAAATAACTCTAGTGATCATGATGCTA
GTCATAATAGTTCGACCAATGAATCGCATCAAAAGTCCTTCAGATCAGTA
TCGAATGACAGTCAAATTAAAACAAATAATCGGCCTCTTGGTTCTCAAAG
AGGGAACTGTGATGGTGAAAGTATGGATACTGCAAATAATCAAACAGTTA
ACGCGTTCCAAAAGTCTTTCACAGCGGCCAATAGTGATTCCTTAACCCCA
TTGACAAATCAGGAGCAAGAACACGTAAGGATTACGACACCACCAGCCAA
TCAGAAATCGTTGTTGGACATGTTTCAACTCGAGGAAGAAGACAAAGAGG
ATGATCCAATATGGCAGCATTTCATTAGTACCCAAACTTCCTCGTCTTCA
ACGAAAACAAAAGCGGACAAAAAGACAACTTCGGCTGATGAAGGTGGATT
AGTTGTaccgaagaagaaaaaaacattcttcAGGAATACTCAAAGTGCTT
CTGCTTCTGGGAAATCAAAATCAGGCGATAATAACAACAACGAGAAACGT
TTAATGGATGAGGAGCATGGCACACATTCTTCAAAACAGAACAcctcatt
caaaatgaccaatCCAGCAAAGACTAAAAATGTACTCAAAacgaaaaaca
cttttttcacAGGCGAAAATCTTGATGATGAAGctattgatgattttttt
aggcTTGAAGAAGACATTtcgaaacaaacaaaaatggctgaaacgaAAAA
TGGAAACCACATAACGGAAAGTAGAAATCTTACTTCGTTTAAAACAAata
ctaaaattcaaaaaacctTTCGAGTACCTTTCCAAATGAGAGCACAACCA
GCGCCTTCTGATAAATGTAACGATGATGAAAGTAATGGAAACAGTGATAA
ATCTGAACTACATCAAAGGCCTTCGAAAAGCAATGTAGAATGTGTTGAGA
ACAAAGCTAGCCCCATCGTTGATTCACCCCCTGACTTAGCGGACTTCGAT
AAAGATTCTCTATGGGACGACGAAATCCTAAATAGCAGTTTATCAAGTAC
AAAGaccaacaaaaataaaaatagtttgAACTCGACTTCTCAAAAAGACG
ACGCGTACGCCGACACGCTTCTAATAACGACTCAAGAACGTATCACGCCT
GATTTTACGGCATTCCCACCACGGAAACGCAATAAACCGTTTGAACTTAA
AGAATTTGATATTGTGAATACAACCACGGAATCTCAGTTAGCGGCACGCG
TTATGGACGTTCAAACACCGACAACTAGAAATAACAATGAACTCGAAAAC
ACAGGTCCTAAAGGGAAACTGAaacgttttaaatttcgaaagAAGTAAAA
AAAGGTATGAAATTATTGCtacttttcatatttttaaacatATTGTTTTT
TAGTGAAATTCTTGTCATTATTCTGTAAGAATGAAATATTCTGTTCTGGA
ATACTCCAGTTTGTCCAAACAAATCGAATTTCCAAAACTACTCATCTTTT
CAGTTTGTTTATTGGTACAAAATATTTGTCAATAGTCAAAAGTCTGTGTA
TCTTTACACGAATACAGGCGTTAATATGTCCATGAAAGTTTTATCTACCT
TTCGATATAATCCAGTCAGGCAATTGTTCTGAAATGTTAATGTGTGGTTA
ACAACCAACGTGTTTGAATGAATCTAATGATACCTTGTTTTAATATcctc
atttcaatcaaaaagcTTTGGAAGTTTGTTGACACCCATCACATTGCTCA
TCTTTAAACCAGTGTAAATCAGGCATCATGGGTTTCTTAATGTTCGTCAA
CCCACGCTCAATCTCCTCTTTGGTAAACACTCCAGCTACGTCCATTTGCG
CCACGTAAAACGGTAGTCCTTTCACGTAACTGACGCCGCACCCGATCTTT
GAAGCGCCTGCCCATACTACTTGTTGAAAGCAACCAACTTTGTTATTACC
AACCGCCTTATATTGTTCCCAGTCAAAGTTTCTCTCCTGGTCATGCCATG
TTTTCACCACCGTTTTCCACGAGGGGAAGATATTTCCCCATGCCCAGCAC
TCCCCACCTTCGCCGGTCTTTCCCCATATTGAGGTATCAAGGACCCCATT
ATCGGCCCAATGTTGTGCTTGTACGGCCAACATGGGATCAAAGGTCAACA
TACTGACATTATGGTTCATTCGATATTTGTTGTGATAAATGAGGCATTCT
TCCTGACATTCGAAATCACATTCGCATATAACGTTTCTTATCAT Run BLAST on NCBI transcript from alignment at scaffold_482:41934..44527+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068244 ID=TCONS_00068244|Name=TCONS_00068244|organism=Clytia hemisphaerica|type=transcript|length=2594bp|location=Sequence derived from alignment at scaffold_482:41934..44527+ (Clytia hemisphaerica)
TGTTAGTTCAATCCCAAACcggatcataccaaagatttcaaaaatagtac
TTGGTGCCATCTGAAGAGATGGATCAAGAGGAGAAAGCAACGATAACGGA
TCTTATTTTGTGTATCGGAAACATCCCTTATACTCTCCGGAATTTTTTTG
ATCTGACTATTATGAAACGACTTCGCATATAGATTTCGAACAGGAAAGCG
TATATTTTCAACCTAAAAATTTACTTTCGTTCACTCTTTGTTTCCACAGG
ATGCAGATGCGGAATACATTGACCAAGCAACCGTTATTCTGAACAAACTC
AAACTTAACGATATCCTCGAGAAAGTCTTGGAATACGAACGTGAACGAAA
GATAGCTTTACTGCGCAGTCGCAGAAATAACTCTAGTGATCATGATGCTA
GTCATAATAGTTCGACCAATGAATCGCATCAAAAGTCCTTCAGATCAGTA
TCGAATGACAGTCAAATTAAAACAAATAATCGGCCTCTTGGTTCTCAAAG
AGGGAACTGTGATGGTGAAAGTATGGATACTGCAAATAATCAAACAGTTA
ACGCGTTCCAAAAGTCTTTCACAGCGGCCAATAGTGATTCCTTAACCCCA
TTGACAAATCAGGAGCAAGAACACGTAAGGATTACGACACCACCAGCCAA
TCAGAAATCGTTGTTGGACATGTTTCAACTCGAGGAAGAAGACAAAGAGG
ATGATCCAATATGGCAGCATTTCATTAGTACCCAAACTTCCTCGTCTTCA
ACGAAAACAAAAGCGGACAAAAAGACAACTTCGGCTGATGAAGGTGGATT
AGTTGTaccgaagaagaaaaaaacattcttcAGGAATACTCAAAGTGCTT
CTGCTTCTGGGAAATCAAAATCAGGCGATAATAACAACAACGAGAAACGT
TTAATGGATGAGGAGCATGGCACACATTCTTCAAAACAGAACAcctcatt
caaaatgaccaatCCAGCAAAGACTAAAAATGTACTCAAAacgaaaaaca
cttttttcacAGGCGAAAATCTTGATGATGAAGctattgatgattttttt
aggcTTGAAGAAGACATTtcgaaacaaacaaaaatggctgaaacgaAAAA
TGGAAACCACATAACGGAAAGTAGAAATCTTACTTCGTTTAAAACAAata
ctaaaattcaaaaaacctTTCGAGTACCTTTCCAAATGAGAGCACAACCA
GCGCCTTCTGATAAATGTAACGATGATGAAAGTAATGGAAACAGTGATAA
ATCTGAACTACATCAAAGGCCTTCGAAAAGCAATGTAGAATGTGTTGAGA
ACAAAGCTAGCCCCATCGTTGATTCACCCCCTGACTTAGCGGACTTCGAT
AAAGATTCTCTATGGGACGACGAAATCCTAAATAGCAGTTTATCAAGTAC
AAAGaccaacaaaaataaaaatagtttgAACTCGACTTCTCAAAAAGACG
ACGCGTACGCCGACACGCTTCTAATAACGACTCAAGAACGTATCACGCCT
GATTTTACGGCATTCCCACCACGGAAACGCAATAAACCGTTTGAACTTAA
AGAATTTGATATTGTGAATACAACCACGGAATCTCAGTTAGCGGCACGCG
TTATGGACGTTCAAACACCGACAACTAGAAATAACAATGAACTCGAAAAC
ACAGGTCCTAAAGGGAAACTGAaacgttttaaatttcgaaagAAGTAAAA
AAAGGTATGAAATTATTGCtacttttcatatttttaaacatATTGTTTTT
TAGTGAAATTCTTGTCATTATTCTGTAAGAATGAAATATTCTGTTCTGGA
ATACTCCAGTTTGTCCAAACAAATCGAATTTCCAAAACTACTCATCTTTT
CAGTTTGTTTATTGGTACAAAATATTTGTCAATAGTCAAAAGTCTGTGTA
TCTTTACACGAATACAGGCGTTAATATGTCCATGAAAGTTTTATCTACCT
TTCGATATAATCCAGTCAGGCAATTGTTCTGAAATGTTAATGTGTGGTTA
ACAACCAACGTGTTTGAATGAATCTAATGATACCTTGTTTTAATATcctc
atttcaatcaaaaagcTTTGGAAGTTTGTTGACACCCATCACATTGCTCA
TCTTTAAACCAGTGTAAATCAGGCATCATGGGTTTCTTAATGTTCGTCAA
CCCACGCTCAATCTCCTCTTTGGTAAACACTCCAGCTACGTCCATTTGCG
CCACGTAAAACGGTAGTCCTTTCACGTAACTGACGCCGCACCCGATCTTT
GAAGCGCCTGCCCATACTACTTGTTGAAAGCAACCAACTTTGTTATTACC
AACCGCCTTATATTGTTCCCAGTCAAAGTTTCTCTCCTGGTCATGCCATG
TTTTCACCACCGTTTTCCACGAGGGGAAGATATTTCCCCATGCCCAGCAC
TCCCCACCTTCGCCGGTCTTTCCCCATATTGAGGTATCAAGGACCCCATT
ATCGGCCCAATGTTGTGCTTGTACGGCCAACATGGGATCAAAGGTCAACA
TACTGACATTATGGTTCATTCGATATTTGTTGTGATAAATGAGGCATTCT
TCCTGACATTCGAAATCACATTCGCATATAACGTTTCTTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068244-exon-scaffold_482-1491911889:41934..44527 | TCONS_00068244-exon-scaffold_482-1491911889:41934..44527 | Clytia hemisphaerica | exon |
| TCONS_00068244-exon-scaffold_482-1510915933:41934..44527 | TCONS_00068244-exon-scaffold_482-1510915933:41934..44527 | Clytia hemisphaerica | exon |
| TCONS_00068244-exon-scaffold_482-1575043694:41934..44527 | TCONS_00068244-exon-scaffold_482-1575043694:41934..44527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:41934..44527 + |
Blast
The following BLAST results are available for this feature:
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