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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068228 ID=TCONS_00068228|Name=TCONS_00068228|organism=Clytia hemisphaerica|type=transcript|length=1306bp
ATGGcgtttttcatatttcaaagaAATGTCAGGTTTCTTATCAACCATCA
TAGTTTGGTTCGAACTTTCGAACCTTCGAAGAAGGTCACAAATATTAATG
AAATAAAGATCGGCAACCAGTTTTTTGCCTCCATCTTCATTTCTTTTCAA
AGAGTGGATAATGACTCCATGATACGGGAACAGAAAAGATGATCTCTTGC
ATTCAAATGTAACAGGTATTGATATCTTTAACTGCTTCTTGTCAATTGAA
TTAGATGTTTCATTGAAATTAATGACAAAAACGGTCACACCATTGTCTTT
CATTTCATCCATTAGAATAAAGTAATATTtaccagaaccatcaaatccTT
GATCATAATGATCGCTATGAAAATCACCAAGTGAAATTGATAAATCATCT
TTACCAAGCTTCGCTGACGGTGGTATGAACATTGATTTTGGaatgtttga
cattttaataattatattttttcttattttaacctATGGTAGAAACAAAA
GAGTAGATAGAGATATATAAATACGTTTGACTGAAGAATGTGCTAACTGC
ACTAGGCTAAACTCAGTGTGTTTTagtcattcgtaggcccaattgtaaaa
ttgatatGATAAGTCTTATAAACAAAATCAGAGGTTCTAGAAATCCAGCC
CACTGAAatatttcaactttgttttgaaagcaaaaaataaaGCCATTAAT
AGTTCGTAGATTAACCCCAGGAAcaaatgccaaatttcatccaaatccga
ccatttttgaggtCTCCAGGCTGCCGGCCTCGTTTTAATGAAAAAGGTCG
TTCCCGGTCGAAAAAgaacccaaggaacaagtgtgaaCCATTATTGCAGT
CTCCAGCCTGTCCCAACGTTTTTGCCTCGTTTTGGAGCTAAAACTCGTGA
CTAcgtccttaaaaatgaaaaacttaaaatcttaaaatattccaTACATC
ATAAAATATCATTAAAGCGCCGTATCGTAGCcttgtaaaaactggcttgg
CAATTGGTAACCAGGCTAGATTGACCCGAAAATCAGGTGTACAGAATTTC
AACCAAATCAGACCATTGTTGAAGTCTCTTGCCTGCCGAAAAGATTCAGC
CTAGTTCGaggctaaaaaagaaaaaaatacctcCAGGGGTCCGCCAAAGG
ATCAAGTGTGTCGAATTTCAGACTTCTTTGGCGTTTAACAGTAATGTGAA
GTATCTTTTTGGTTGGTGATTATTTGCTGTCATACCATGGAGAGTTCAAC
GTGTTTCTTATCATCAGAACAAAGTAATCTTTTCCAGTTGAATCATACCC
TTGTTG Run BLAST on NCBI protein sequence of TCONS_00068228-protein >TCONS_00068228-protein ID=TCONS_00068228-protein|Name=TCONS_00068228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MSNIPKSMFIPPSAKLGKDDLSISLGDFHSDHYDQGFDGSGKYYFILMDE
MKDNGVTVFVINFNETSNSIDKKQLKISIPVTFECKRSSFLFPYHGVIIH
SLKRNEDGGKKLVADLYFINICDLLRRFESSNQTMMVDKKPDISLKYEKR
H Run BLAST on NCBI transcript from alignment at scaffold_480:97858..99163 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068228 ID=TCONS_00068228|Name=TCONS_00068228|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at scaffold_480:97858..99163 (Clytia hemisphaerica)
CAACAAGGGTATGATTCAACTGGAAAAGATTACTTTGTTCTGATGATAAG
AAACACGTTGAACTCTCCATGGTATGACAGCAAATAATCACCAACCAAAA
AGATACTTCACATTACTGTTAAACGCCAAAGAAGTCTGAAATTCGACACA
CTTGATCCTTTGGCGGACCCCTGgaggtatttttttcttttttagcctCG
AACTAGGCTGAATCTTTTCGGCAGGCAAGAGACTTCAACAATGGTCTGAT
TTGGTTGAAATTCTGTACACCTGATTTTCGGGTCAATCTAGCCTGGTTAC
CAATTGccaagccagtttttacaagGCTACGATACGGCGCTTTAATGATA
TTTTATGATGTAtggaatattttaagattttaagtttttcatttttaagg
acgTAGTCACGAGTTTTAGCTCCAAAACGAGGCAAAAACGTTGGGACAGG
CTGGAGACTGCAATAATGGttcacacttgttccttgggttcTTTTTCGAC
CGGGAACGACCTTTTTCATTAAAACGAGGCCGGCAGCCTGGAGacctcaa
aaatggtcggatttggatgaaatttggcatttgTTCCTGGGGTTAATCTA
CGAACTATTAATGGCtttattttttgctttcaaaacaaagttgaaatatT
TCAGTGGGCTGGATTTCTAGAACCTCTGATTTTGTTTATAAGACTTATCa
tatcaattttacaattgggcctacgaatgactAAAACACACTGAGTTTAG
CCTAGTGCAGTTAGCACATTCTTCAGTCAAACGTATTTATATATCTCTAT
CTACTCTTTTGTTTCTACCATaggttaaaataagaaaaaatataattatt
aaaatgtcaaacattCCAAAATCAATGTTCATACCACCGTCAGCGAAGCT
TGGTAAAGATGATTTATCAATTTCACTTGGTGATTTTCATAGCGATCATT
ATGATCAAggatttgatggttctggtaAATATTACTTTATTCTAATGGAT
GAAATGAAAGACAATGGTGTGACCGTTTTTGTCATTAATTTCAATGAAAC
ATCTAATTCAATTGACAAGAAGCAGTTAAAGATATCAATACCTGTTACAT
TTGAATGCAAGAGATCATCTTTTCTGTTCCCGTATCATGGAGTCATTATC
CACTCTTTGAAAAGAAATGAAGATGGAGGCAAAAAACTGGTTGCCGATCT
TTATTTCATTAATATTTGTGACCTTCTTCGAAGGTTCGAAAGTTCGAACC
AAACTATGATGGTTGATAAGAAACCTGACATTtctttgaaatatgaaaaa
cgCCAT Coding sequence (CDS) from alignment at scaffold_480:97858..99163 >TCONS_00068228 ID=TCONS_00068228|Name=TCONS_00068228|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_480:97858..99163 (Clytia hemisphaerica)
atgtcaaacattCCAAAATCAATGTTCATACCACCGTCAGCGAAGCTTGG
TAAAGATGATTTATCAATTTCACTTGGTGATTTTCATAGCGATCATTATG
ATCAAggatttgatggttctggtaAATATTACTTTATTCTAATGGATGAA
ATGAAAGACAATGGTGTGACCGTTTTTGTCATTAATTTCAATGAAACATC
TAATTCAATTGACAAGAAGCAGTTAAAGATATCAATACCTGTTACATTTG
AATGCAAGAGATCATCTTTTCTGTTCCCGTATCATGGAGTCATTATCCAC
TCTTTGAAAAGAAATGAAGATGGAGGCAAAAAACTGGTTGCCGATCTTTA
TTTCATTAATATTTGTGACCTTCTTCGAAGGTTCGAAAGTTCGAACCAAA
CTATGATGGTTGATAAGAAACCTGACATTtctttgaaatatgaaaaacgC
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068228-exon-scaffold_480-1491911889:97858..99163 | TCONS_00068228-exon-scaffold_480-1491911889:97858..99163 | Clytia hemisphaerica | exon |
| TCONS_00068228-exon-scaffold_480-1510915933:97858..99163 | TCONS_00068228-exon-scaffold_480-1510915933:97858..99163 | Clytia hemisphaerica | exon |
| TCONS_00068228-exon-scaffold_480-1575043694:97858..99163 | TCONS_00068228-exon-scaffold_480-1575043694:97858..99163 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:97858..99163 . |
Blast
The following BLAST results are available for this feature:
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