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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068226 ID=TCONS_00068226|Name=TCONS_00068226|organism=Clytia hemisphaerica|type=transcript|length=1443bp
TAACACTTTAAAATAAATGTTTTGTAAACAAATACAAATCTGTGACAAAC
GAAACgggtcaagttgaacatttacaagaatttttgtcattggattggtc
gttaactattcaaacaaaaacttttatttatttttcgaaaggatgcatca
tctctattgttttgaataagcaattatgtgagcatcttgtaaaaacttca
atacAACTGAACGAAACAGCCATTTGCGAGAGGAGAAGTGACAAAGAGCT
ACGACGTGAAAAGATCTTTAGAATGATTTAAATGAAATTCATAACACGAA
GAGTAACAAAAACACAACAATCAAATACTGCCAGTATATTATTAACAGTA
AAGCGACAAATTTGAAACAGCAACGGTGAAAGTAAAAAGGACGATGGAGG
AAACTAGAcaaaatttattaaaacaatTATTGTTTAAATGCGAACACCAA
CAGCGCGTTGGCCCGAAACAGTAACGTGGATGTGTTGCACGGCACGATGC
TGTTCAATATTTTTATGGCTATTGTCATCGTGCAATTGACNAATGCGAAC
ACCAACAGCGCGTTGGCCCGAAACAGTAACGTGGATGTGTTGCACGGCAC
GATgttgttcaatatttttatgGCTATTGTCATTGTGCAATTGACGCTTT
GGCCTTGGGTTTCTCTGTTTCCAGGATTCAAGAAATCCTTCCTCGTCCCT
GAAGCCGTTACTCTTAAAAAACCGGTATGACCTCACCGAGTCAGGGCCGC
CATTTAAAAGTCTCATCTTTTTGTATTTGTTATAGGATATAACTGTcgtt
tgtttctttttcttttcacccTCTTCCTGTTCTTTCTTCTCCTGTTCTTT
CTTCTCCTGTTCTTTCTTCTCATGTTCTTTTTTCGCCTTTTCTCTCTTAG
CTTGTTctttcttagcttgttctttcttagcttgttctttcTTAGCCTGT
TctgtctttttcttcttttctattTCTTTCTGTTTCTCTGCTTCGGCAAG
GCGTTTATTTGCTCTGTCTAGTTCGTTACGCAAACTCGCTATTTCATTTC
TTTGTCTTTCCATCTCCTTCATCTGTTCCATCTTTTCTCGTTCCTCCACT
TCCTCTCTTCTTGATTCCTCTGACATCTCCGCACTCAGAGCGTCGTCACT
CATGGGGTAGTCTGACATGATGTtcatttttatttgctttttaacTTGGA
GAGAGAATAGTATGGGGCTTCAAATAGAGAATGTAACAAAGTCTAAGTAT
GAAGagcttctttttcaaaacaaaaataaaaaatctctcTTGGGTATAAG
GAAAAGTAAAAACtttaaaggtttgttttctATCTAAAGGGAGTGATCAC
TGATCTCCCTTTAGATAACCTTGGCTTTCAGTTtgtattttcagtttcag
tttctgAAAATGCGTAACAGGGTACACCACGTGAAGGATAAGC Run BLAST on NCBI protein sequence of TCONS_00068226-protein >TCONS_00068226-protein ID=TCONS_00068226-protein|Name=TCONS_00068226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MNIMSDYPMSDDALSAEMSEESRREEVEEREKMEQMKEMERQRNEIASLR
NELDRANKRLAEAEKQKEIEKKKKTEQAKKEQAKKEQAKKEQAKREKAKK
EHEKKEQEKKEQEKKEQEEGEKKKKQTTVISYNKYKKMRLLNGGPDSVRS
YRFFKSNGFRDEEGFLESWKQRNPRPKRQLHNDNSHKNIEQHRAVQHIHV
TVSGQRAVGVRIXQLHDDNSHKNIEQHRAVQHIHVTVSGQRAVGVRI Run BLAST on NCBI transcript from alignment at scaffold_480:62198..63640 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068226 ID=TCONS_00068226|Name=TCONS_00068226|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at scaffold_480:62198..63640 (Clytia hemisphaerica)
GCTTATCCTTCACGTGGTGTACCCTGTTACGCATTTTcagaaactgaaac
tgaaaatacaAACTGAAAGCCAAGGTTATCTAAAGGGAGATCAGTGATCA
CTCCCTTTAGATagaaaacaaacctttaaaGTTTTTACTTTTCCTTATAC
CCAAgagagattttttatttttgttttgaaaaagaagctCTTCATACTTA
GACTTTGTTACATTCTCTATTTGAAGCCCCATACTATTCTCTCTCCAAgt
taaaaagcaaataaaaatgaACATCATGTCAGACTACCCCATGAGTGACG
ACGCTCTGAGTGCGGAGATGTCAGAGGAATCAAGAAGAGAGGAAGTGGAG
GAACGAGAAAAGATGGAACAGATGAAGGAGATGGAAAGACAAAGAAATGA
AATAGCGAGTTTGCGTAACGAACTAGACAGAGCAAATAAACGCCTTGCCG
AAGCAGAGAAACAGAAAGAaatagaaaagaagaaaaagacagAACAGGCT
AAgaaagaacaagctaagaaagaacaagctaagaaagAACAAGCTAAGAG
AGAAAAGGCGAAAAAAGAACATGAGAAGAAAGAACAGGAGAAGAAAGAAC
AGGAGAAGAAAGAACAGGAAGAgggtgaaaagaaaaagaaacaaacgACA
GTTATATCCTATAACAAATACAAAAAGATGAGACTTTTAAATGGCGGCCC
TGACTCGGTGAGGTCATACCGGTTTTTTAAGAGTAACGGCTTCAGGGACG
AGGAAGGATTTCTTGAATCCTGGAAACAGAGAAACCCAAGGCCAAAGCGT
CAATTGCACAATGACAATAGCcataaaaatattgaacaacATCGTGCCGT
GCAACACATCCACGTTACTGTTTCGGGCCAACGCGCTGTTGGTGTTCGCA
TTNGTCAATTGCACGATGACAATAGCCATAAAAATATTGAACAGCATCGT
GCCGTGCAACACATCCACGTTACTGTTTCGGGCCAACGCGCTGTTGGTGT
TCGCATTTAAACAATAattgttttaataaattttgTCTAGTTTCCTCCAT
CGTCCTTTTTACTTTCACCGTTGCTGTTTCAAATTTGTCGCTTTACTGTT
AATAATATACTGGCAGTATTTGATTGTTGTGTTTTTGTTACTCTTCGTGT
TATGAATTTCATTTAAATCATTCTAAAGATCTTTTCACGTCGTAGCTCTT
TGTCACTTCTCCTCTCGCAAATGGCTGTTTCGTTCAGTTgtattgaagtt
tttacaagatgctcacataattgcttattcaaaacaatagagatgatgca
tcctttcgaaaaataaataaaagtttttgtttgaatagttaacgaccaat
ccaatgacaaaaattcttgtaaatgttcaacttgacccGTTTCGTTTGTC
ACAGATTTGTATTTGTTTACAAAACATTTATTTTAAAGTGTTA Coding sequence (CDS) from alignment at scaffold_480:62198..63640 >TCONS_00068226 ID=TCONS_00068226|Name=TCONS_00068226|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_480:62198..63640 (Clytia hemisphaerica)
atgaACATCATGTCAGACTACCCCATGAGTGACGACGCTCTGAGTGCGGA
GATGTCAGAGGAATCAAGAAGAGAGGAAGTGGAGGAACGAGAAAAGATGG
AACAGATGAAGGAGATGGAAAGACAAAGAAATGAAATAGCGAGTTTGCGT
AACGAACTAGACAGAGCAAATAAACGCCTTGCCGAAGCAGAGAAACAGAA
AGAaatagaaaagaagaaaaagacagAACAGGCTAAgaaagaacaagcta
agaaagaacaagctaagaaagAACAAGCTAAGAGAGAAAAGGCGAAAAAA
GAACATGAGAAGAAAGAACAGGAGAAGAAAGAACAGGAGAAGAAAGAACA
GGAAGAgggtgaaaagaaaaagaaacaaacgACAGTTATATCCTATAACA
AATACAAAAAGATGAGACTTTTAAATGGCGGCCCTGACTCGGTGAGGTCA
TACCGGTTTTTTAAGAGTAACGGCTTCAGGGACGAGGAAGGATTTCTTGA
ATCCTGGAAACAGAGAAACCCAAGGCCAAAGCGTCAATTGCACAATGACA
ATAGCcataaaaatattgaacaacATCGTGCCGTGCAACACATCCACGTT
ACTGTTTCGGGCCAACGCGCTGTTGGTGTTCGCATTNGTCAATTGCACGA
TGACAATAGCCATAAAAATATTGAACAGCATCGTGCCGTGCAACACATCC
ACGTTACTGTTTCGGGCCAACGCGCTGTTGGTGTTCGCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068226-exon-scaffold_480-1491911889:62198..63640 | TCONS_00068226-exon-scaffold_480-1491911889:62198..63640 | Clytia hemisphaerica | exon |
| TCONS_00068226-exon-scaffold_480-1510915933:62198..63640 | TCONS_00068226-exon-scaffold_480-1510915933:62198..63640 | Clytia hemisphaerica | exon |
| TCONS_00068226-exon-scaffold_480-1575043694:62198..63640 | TCONS_00068226-exon-scaffold_480-1575043694:62198..63640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:62198..63640 . |
Blast
The following BLAST results are available for this feature:
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