TCONS_00068225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068225
Unique NameTCONS_00068225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068225 ID=TCONS_00068225|Name=TCONS_00068225|organism=Clytia hemisphaerica|type=transcript|length=1628bp
CAAAagtgtgtttttttcttttcccaaTCAAAAACAAATCTCACAACATC
AAGTCAAGCTTTATGGTGAAAGTTGCCAATTCTTAGTTTGTTTATATATA
AAAGGAAACTTTTGGAAAGTAAACCTTGTGGAAGCTTACCCACGTGGAAA
TCGGTGATTTGTGGAAGGATACAATGTTTGTATTGGATCTTGAGGACCAA
GAGCAAGAAATTAATGCAACACATTGTCgatttttagatttagattatAT
AAATGACAGTTCGTTTGTATCTATTGACTTGAATGATGATAAGAATGAAT
GTGAAATTTGCCACCAAACTACAGAAGAACCGATAGTCAATGTTGTTTTG
AGtgatgaatttttgaaatacgAAAAATCTATAGAACGCTGTGGAAGTGG
TGGAGCTTTTACTAAAGCCCACCAAATTTGTTTGGATAGGTGGTCTGAAG
TTATTgaaagaaacttaaagattGAAGATTCAAAATCAAGCCCTCCTAAA
GATGATTCATCATTTGTTCAAAGAATAAAAACTACAACAAACAGACAGAA
TATGTCACATGATATTATTGCTACACATAATACTACAAACAAAACCCTAA
CAGAGATACCAGCAGAGATTAACCAAAGCTGTAGCTGTCCTTCATTTGAA
TCTCGAAATAACGACTACCAAAAGTTTCAATGCAAAAATAAAAGGGATAA
TTCTTCCTCAGTTGAACTTATGAAACTTGAAGAAATCAAAAAGCTTTTGg
aaaagcttgaaaattttGTAACTGGTACATCAAACGAATTGGTTGAGCAG
CTTCAACTACGAGATAAGTTATCACATGAAATATCTGGTCAAAAAGCTGT
CATTGCACAACTTGTTCAACTTCAAAAACCTCATCAAAGAACAATCAATA
TCGCAAAACATCTCAAAATTCCTAATTCGATCTCCAAAACTTCAATATCA
GTTTGATATTGTTTTATGAATATTTTGATAGTTTCTCATGAAACATTATA
ATTGCTTTCACGAGATAGGTAGGGCTGGCCCATCAACCTCGTGTAGCAAT
ATCTTTAAAGTAAAATATAGATCATTTCTAACAATAATGAAATTATatat
aaaatctcaaaaaagattgTAGTATAtgaaagggaatttttttaacttct
tttattttttatgcaatatttatttttaaaatatgctgAACTATATTCTC
GTTTTcacaattttaaaaatatgtttttaataAATGGAAATCTATTTATT
AAGTACTTGTTCAGAAGCCAGTTACATTGCAGTGGTTTTAGCAGACACAC
TTCATGGTGTATGGTAAAGTTAATATCCTTGCATATATGGTAATCCCTTG
TGTTTATATCATTTTGCTAAACTTTTACAAATTGAGTAATAGTGTATATA
TTAATTAGTTTATCATAAACGTCTTTTTTATACAAAGATTTCTCCTTTGA
CGATAgcatgaaaagaaaacattattttgttCACATTTGAGCAGTAATCA
CGTTTGTTGTAATTTAATATTTCCGTTTTTCTAATTGCTCTGTGCGTCAT
GAAAAGAAAACCACAGCCTACTATTCGATTAATCGCCCGCGGTAGGATTA
AACCAGACAACAATTTCGTCATGGTAAC
Run BLAST on NCBI

protein sequence of TCONS_00068225-protein

>TCONS_00068225-protein ID=TCONS_00068225-protein|Name=TCONS_00068225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MFVLDLEDQEQEINATHCRFLDLDYINDSSFVSIDLNDDKNECEICHQTT
EEPIVNVVLSDEFLKYEKSIERCGSGGAFTKAHQICLDRWSEVIERNLKI
EDSKSSPPKDDSSFVQRIKTTTNRQNMSHDIIATHNTTNKTLTEIPAEIN
QSCSCPSFESRNNDYQKFQCKNKRDNSSSVELMKLEEIKKLLEKLENFVT
GTSNELVEQLQLRDKLSHEISGQKAVIAQLVQLQKPHQRTINIAKHLKIP
NSISKTSISV
Run BLAST on NCBI

transcript from alignment at scaffold_480:116109..118378-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068225 ID=TCONS_00068225|Name=TCONS_00068225|organism=Clytia hemisphaerica|type=transcript|length=2270bp|location=Sequence derived from alignment at scaffold_480:116109..118378- (Clytia hemisphaerica)
CAAAAGTGTGTTTTTTTCTTTTCCCAATCAAAAACAAATCTCACAACATC
AAGTCAAGCTTTATGGTGAAAGTTGCCAATTCTTAGTTTGTTTATATATA
AAAGGAAACTTTTGGAAAGTAAACCTTGTGGAAGCTTACCCACGTGGAAA
TCGGTGATTTGTGGAAGGATACAATGTTTGTATTGGATCTTGAGGACCAA
GAGCAAGAAATTAATGCAACACATTGTCGATTTTTAGATTTAGATTATAT
AAATGACAGTTCGTTTGTATCTATTGACTTGAATGATGATAAGAATGAAT
GTGAAATTTGCCACCAAACTACAGAAGAACCGATAGTCAATGTTGTTTTG
AGTGATGAATTTTTGAAATACGAAAAATCTATAGAACGCTGTGGAAGTGG
TGGAGCTTTTACTAAAGCCCACCAAATTTGTTTGGATAGGTGGTCTGAAG
TTATTGAAAGAAACTTAAAGATTGAAGATTCAAAATCAAGCCCTCCTAAA
GATGATTCATCATTTGTTCAAAGAATAAAAACTACAACAAACAGACAGAA
TATGTCACATGATATTATTGCTACACATAATACTACAAACAAAACCCTAA
CAGAGATACCAGCAGAGATTAACCAAAGCTGTAGCTGTCCTTCATTTGAA
TCTCGAAATAACGACTACCAAAAGTTTCAATGCAAAAATAAAAGGGATAA
TTCTTCCTCAGGTAATTTTGGGTTACTCTAAAGAATTCTTTTGCATATTT
TCAAGAATTTTTATATTTATTTTTGCACATGTGTATATTCATGATTTGCA
GACCCAACAGTTGATTGATTGCAAGTGGCGTATTGGCTGATTTTATGTCA
CTTGCAACCAATCAGCTGTTGGCTCTGTGAGGTAATGTCAGAAGACATTG
CAATGGTGCATATCATGAATATCTTTTTTTTTAATGTCACTTTTCATGAC
GCCAGGTCATTTCTTCTTGAAATGATTAATTTTCTTGCACTTTAACATAA
TCCATAATTTCTAGACTAAATTGGCATTTGCCAGCAATAGACCTTTTGAT
GTGATATGTCATGTTGAATAAAAAACTCTAGCACAAAAAAAAAATGTCTA
TTGTATATCCTTTCTTTGGTTATACCAGCGTTTATTTTCAAACTCAGGAA
AATTCCTGGTTTTTCTTTTGGCATTTATGCTCAGCAATGATTTCATATGA
TGCATATAATCATTTTTTGTTTTATGTTTACAGTTGAACTTATGAAACTT
GAAGAAATCAAAAAGCTTTTGGAAAAGCTTGAAAATTTTGTAACTGGTAA
GTATATTACTTAAACACTTTCAAATGAAATTAGGTTCAAATATTTTTTCT
CAATGTTTTGGTTGGTAAACAAGACGGCAGGGGAGATTTTTGTAATTTAA
TTTCCCTCAATTTTAGGTACATCAAACGAATTGGTTGAGCAGCTTCAACT
ACGAGATAAGTTATCACATGAAATATCTGGTCAAAAAGCTGTCATTGCAC
AACTTGTTCAACTTCAAAAACCTCATCAAAGAACAATCAATATCGCAAAA
CATCTCAAAATTCCTAATTCGATCTCCAAAACTTCAATATCAGTTTGATA
TTGTTTTATGAATATTTTGATAGTTTCTCATGAAACATTATAATTGCTTT
CACGAGATAGGTAGGGCTGGCCCATCAACCTCGTGTAGCAATATCTTTAA
AGTAAAATATAGATCATTTCTAACAATAATGAAATTATATATAAAATCTC
AAAAAAGATTGTAGTATATGAAAGGGAATTTTTTTAACTTCTTTTATTTT
TTATGCAATATTTATTTTTAAAATATGCTGAACTATATTCTCGTTTTCAC
AATTTTAAAAATATGTTTTTAATAAATGGAAATCTATTTATTAAGTACTT
GTTCAGAAGCCAGTTACATTGCAGTGGTTTTAGCAGACACACTTCATGGT
GTATGGTAAAGTTAATATCCTTGCATATATGGTAATCCCTTGTGTTTATA
TCATTTTGCTAAACTTTTACAAATTGAGTAATAGTGTATATATTAATTAG
TTTATCATAAACGTCTTTTTTATACAAAGATTTCTCCTTTGACGATAGCA
TGAAAAGAAAACATTATTTTGTTCACATTTGAGCAGTAATCACGTTTGTT
GTAATTTAATATTTCCGTTTTTCTAATTGCTCTGTGCGTCATGAAAAGAA
AACCACAGCCTACTATTCGATTAATCGCCCGCGGTAGGATTAAACCAGAC
AACAATTTCGTCATGGTAAC

Coding sequence (CDS) from alignment at scaffold_480:116109..118378-

>TCONS_00068225 ID=TCONS_00068225|Name=TCONS_00068225|organism=Clytia hemisphaerica|type=CDS|length=2349bp|location=Sequence derived from alignment at scaffold_480:116109..118378- (Clytia hemisphaerica)
GTACATCAAACGAATTGGTTGAGCAGCTTCAACTACGAGATAAGTTATCA
CATGAAATATCTGGTCAAAAAGCTGTCATTGCACAACTTGTTCAACTTCA
AAAACCTCATCAAAGAACAATCAATATCGCAAAACATCTCAAAATTCCTA
ATTCGATCTCCAAAACTTCAATATCAGTTTGATTGAACTTATGAAACTTG
AAGAAATCAAAAAGCTTTTGGAAAAGCTTGAAAATTTTGTAACTGATGTT
TGTATTGGATCTTGAGGACCAAGAGCAAGAAATTAATGCAACACATTGTC
GATTTTTAGATTTAGATTATATAAATGACAGTTCGTTTGTATCTATTGAC
TTGAATGATGATAAGAATGAATGTGAAATTTGCCACCAAACTACAGAAGA
ACCGATAGTCAATGTTGTTTTGAGTGATGAATTTTTGAAATACGAAAAAT
CTATAGAACGCTGTGGAAGTGGTGGAGCTTTTACTAAAGCCCACCAAATT
TGTTTGGATAGGTGGTCTGAAGTTATTGAAAGAAACTTAAAGATTGAAGA
TTCAAAATCAAGCCCTCCTAAAGATGATTCATCATTTGTTCAAAGAATAA
AAACTACAACAAACAGACAGAATATGTCACATGATATTATTGCTACACAT
AATACTACAAACAAAACCCTAACAGAGATACCAGCAGAGATTAACCAAAG
CTGTAGCTGTCCTTCATTTGAATCTCGAAATAACGACTACCAAAAGTTTC
AATGCAAAAATAAAAGGGATAATTCTTCCTCAGGTACATCAAACGAATTG
GTTGAGCAGCTTCAACTACGAGATAAGTTATCACATGAAATATCTGGTCA
AAAAGCTGTCATTGCACAACTTGTTCAACTTCAAAAACCTCATCAAAGAA
CAATCAATATCGCAAAACATCTCAAAATTCCTAATTCGATCTCCAAAACT
TCAATATCAGTTTGATTGAACTTATGAAACTTGAAGAAATCAAAAAGCTT
TTGGAAAAGCTTGAAAATTTTGTAACTGATGTTTGTATTGGATCTTGAGG
ACCAAGAGCAAGAAATTAATGCAACACATTGTCGATTTTTAGATTTAGAT
TATATAAATGACAGTTCGTTTGTATCTATTGACTTGAATGATGATAAGAA
TGAATGTGAAATTTGCCACCAAACTACAGAAGAACCGATAGTCAATGTTG
TTTTGAGTGATGAATTTTTGAAATACGAAAAATCTATAGAACGCTGTGGA
AGTGGTGGAGCTTTTACTAAAGCCCACCAAATTTGTTTGGATAGGTGGTC
TGAAGTTATTGAAAGAAACTTAAAGATTGAAGATTCAAAATCAAGCCCTC
CTAAAGATGATTCATCATTTGTTCAAAGAATAAAAACTACAACAAACAGA
CAGAATATGTCACATGATATTATTGCTACACATAATACTACAAACAAAAC
CCTAACAGAGATACCAGCAGAGATTAACCAAAGCTGTAGCTGTCCTTCAT
TTGAATCTCGAAATAACGACTACCAAAAGTTTCAATGCAAAAATAAAAGG
GATAATTCTTCCTCAGGTACATCAAACGAATTGGTTGAGCAGCTTCAACT
ACGAGATAAGTTATCACATGAAATATCTGGTCAAAAAGCTGTCATTGCAC
AACTTGTTCAACTTCAAAAACCTCATCAAAGAACAATCAATATCGCAAAA
CATCTCAAAATTCCTAATTCGATCTCCAAAACTTCAATATCAGTTTGATT
GAACTTATGAAACTTGAAGAAATCAAAAAGCTTTTGGAAAAGCTTGAAAA
TTTTGTAACTGATGTTTGTATTGGATCTTGAGGACCAAGAGCAAGAAATT
AATGCAACACATTGTCGATTTTTAGATTTAGATTATATAAATGACAGTTC
GTTTGTATCTATTGACTTGAATGATGATAAGAATGAATGTGAAATTTGCC
ACCAAACTACAGAAGAACCGATAGTCAATGTTGTTTTGAGTGATGAATTT
TTGAAATACGAAAAATCTATAGAACGCTGTGGAAGTGGTGGAGCTTTTAC
TAAAGCCCACCAAATTTGTTTGGATAGGTGGTCTGAAGTTATTGAAAGAA
ACTTAAAGATTGAAGATTCAAAATCAAGCCCTCCTAAAGATGATTCATCA
TTTGTTCAAAGAATAAAAACTACAACAAACAGACAGAATATGTCACATGA
TATTATTGCTACACATAATACTACAAACAAAACCCTAACAGAGATACCAG
CAGAGATTAACCAAAGCTGTAGCTGTCCTTCATTTGAATCTCGAAATAAC
GACTACCAAAAGTTTCAATGCAAAAATAAAAGGGATAATTCTTCCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042586XLOC_042586Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068225-proteinTCONS_00068225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068225-exon-scaffold_480-1575043694:117668..118378TCONS_00068225-exon-scaffold_480-1575043694:117668..118378Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1575043694:117083..117145TCONS_00068225-exon-scaffold_480-1575043694:117083..117145Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1575043694:116109..116962TCONS_00068225-exon-scaffold_480-1575043694:116109..116962Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1510915933:117668..118378TCONS_00068225-exon-scaffold_480-1510915933:117668..118378Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1510915933:117083..117145TCONS_00068225-exon-scaffold_480-1510915933:117083..117145Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1510915933:116109..116962TCONS_00068225-exon-scaffold_480-1510915933:116109..116962Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1491911889:117668..118378TCONS_00068225-exon-scaffold_480-1491911889:117668..118378Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1491911889:117083..117145TCONS_00068225-exon-scaffold_480-1491911889:117083..117145Clytia hemisphaericaexon
TCONS_00068225-exon-scaffold_480-1491911889:116109..116962TCONS_00068225-exon-scaffold_480-1491911889:116109..116962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_480supercontigscaffold_480:116109..118378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.97523	3.12075	0.764329	0.249259	40.6958	23.7391	18.6756	22.4793	22.6909	43.0077	15.0462	40.2292	40.273	29.8224	27.0593	20.3546	4.2793	10.5998	27.3749	26.2263	2.63489	2.75907	8.82935	7.29742	2.84541	3.66544	39.7335	37.9776	25.8632	24.2866
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011680FEZ
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top