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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068224 ID=TCONS_00068224|Name=TCONS_00068224|organism=Clytia hemisphaerica|type=transcript|length=1702bp
cttttttgacaatAGGATCAGAATTCTAAAACATGAATATTCGAACATTT
GAAACACTATGATTAAAACGAACTACAGTAATCAATTAAACTATAGTAAT
ATAAGGAATGGTTACAATTTAATGGGGGTAAGATAAAATGAGCTAGAACT
AGAATAAAAACGATGAAAATATAAGACGAACTAGGTAAACCAAATCAACG
GATGCAAATGAAGAAAGTTGTCATTTGTGTTGAATATTTCAACCATAATG
TATCTGAACAGAACGTGATGATGAAACAAGTTAAATCCACAAGCAAATAG
GTTATGCTACGTCCACAATTACATAAATCNCAAGTTCTTGAGAGAAATAT
TTGGATTTGTTTCATTGACTTTGtaggttttgaaaaacaaaCCATCGCGG
TCGTATGGTTTGCTTCTATCGAAGAATGTAACAGCAGCTTCCTCTAAATT
CCAATTCATTGAAAAACTAGACATTAACATTCTCGAGTCGTTTATCTCTG
TAACTTTCTCACCATTCTTAAGATTTAAAGTAGCAAATGTAACACGATCT
TGGTCTTTCGTTTCATATAACAAACCCTGATATAATGAAAATCCTAAGAG
AAGTTGATCAAATCGTTGTAAATTGAAAAGAGAATCGAAACTACAGTGTA
GATTGTTTGCTGGTGTATCAATAAAACGCTTAAAGGTGTCTCGAAGGTCA
GAGAGAATTATTAGTTGACCATCTTGGACCTTTTTAATGCAGATTCGGTT
TTCTGGATAATGGATAATCAACAATGCTGAACCTTTGACGAACTCCAGCT
TAAAAGAAGTATCATCTGGGAATATTTCTTTGTATCGATGTACTAATTTT
CCATCCATGTTATATTCGATGATCTGATAAGCTTCATTATCATAATCATT
ATCCAGTAAAACAGCTTTATAATAATAAATCTTGTCGTTGAATACTTGAA
TTTTGGGGAAGCCAGGAATTGCACGGACATTGACATCAAGCTTAAATGTT
AACCTCCGAAGATGGCTAAGCTTGCTCTGGTCAACACAGATAAAGTCTAT
ACAGAACCAAGGTCGATATGTGTCATCATCAAGGTAGACAGGATTGcaaa
aagctttacaaatcaAAAGAGATGTATCATTATTGTCGACCTCGCATTTA
AATCCATCGTAGATTCTGGCATCATAAGATAATCGTAGATTAACATTGTT
ATGCTTAATCGTGGTTTCTTTAGCTTGTATGGTTAGGTAGTCCCCGACAT
TGATGTAATAAAGTTCCAATACAATTTCTTCGTCAACAATGCGTTCAACC
ACATGAACAAATCTGCCACTGGATGGATCaaactttgttttctttttttg
aaccTCTGATTGGGAATACTGAATATCAATATTCAGGAATTTGCGCTCGT
ATTCACTCTGttctttgttgaaattgataacATAAATTCGAGTGCTCTCT
TTAAAATCGTCAGTTTGAACcaagtttgaaaatcgaaaCATCGTGCCATC
ATCAATTTCAAGAAGTAAGAAATATTCACCAGTACCATAAAATCCTTGAG
TGTATAATATGGGTTCAAACCGATCGCCCAAACAAAGTGTTGTTATCTTA
TTAACATTGGTTCCTTGCGGAACAAACATTGCCTTCTTGATATTATTCAT
ATTTCAcctgaaaaatatcagaaacaactattacacgttttttataaata
ta Run BLAST on NCBI transcript from alignment at scaffold_480:103013..104779- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068224 ID=TCONS_00068224|Name=TCONS_00068224|organism=Clytia hemisphaerica|type=transcript|length=1767bp|location=Sequence derived from alignment at scaffold_480:103013..104779- (Clytia hemisphaerica)
CTTTTTTGACAATAGGATCAGAATTCTAAAACATGAATATTCGAACATTT
GAAACACTATGATTAAAACGAACTACAGTAATCAATTAAACTATAGTAAT
ATAAGGAATGGTTACAATTTAATGGGGGTAAGATAAAATGAGCTAGAACT
AGAATAAAAACGATGAAAATATAAGACGAACTAGGTAAACCAAATCAACG
GATGCAAATGAAGAAAGTTGTCATTTGTGTTGAATATTTCAACCATAATG
TATCTGAACAGAACGTGATGATGAAACAAGTTAAATCCACAAGCAAATAG
GTTATGCTACGTCCACAATTACATAAATCNCAAGTTCTTGAGAGAAATAT
TTGGATTTGTTTCATTGACTTTGTAGGTTTTGAAAAACAAACCATCGCGG
TCGTATGGTTTGCTTCTATCGAAGAATGTAACAGCAGCTTCCTCTAAATT
CCAATTCATTGAAAAACTAGACATTAACATTCTCGAGTCGTTTATCTCTG
TAACTTTCTCACCATTCTTAAGATTTAAAGTAGCAAATGTAACACGATCT
TGGTCTTTCGTTTCATATAACAAACCCTGATATAATGAAAATCCTAAGAG
AAGTTGATCAAATCGTTGTAAATTGAAAAGAGAATCGAAACTACAGTGTA
GATTGTTTGCTGGTGTATCAATAAAACGCTTAAAGGTGTCTCGAAGGTCA
GAGAGAATTATTAGTTGACCATCTTGGACCTTTTTAATGCAGATTCGGTT
TTCTGGATAATGGATAATCAACAATGCTGAACCTTTGACGAACTCCAGCT
TAAAAGAAGTATCATCTGGGAATATTTCTTTGTATCGATGTACTAATTTT
CCATCCATGTTATATTCGATGATCTGATAAGCTTCATTATCATAATCATT
ATCCAGTAAAACAGCTTTATAATAATAAATCTTGTCGTTGAATACTTGAA
TTTTGGGGAAGCCAGGAATTGCACGGACATTGACATCAAGCTTAAATGTT
AACCTCCGAAGATGGCTAAGCTTGCTCTGGTCAACACAGATAAAGTCTAT
ACAGAACCAAGGTCGATATGTGTCATCATCAAGGTAGACAGGATTGCAAA
AAGCTTTACAAATCAAAAGAGATGTATCATTATTGTCGACCTCGCATTTA
AATCCATCGTAGATTCTGGCATCATAAGATAATCGTAGATTAACATTGTT
ATGCTTAATCGTGGTTTCTTTAGCTTGTATGGTTAGGTAGTCCCCGACAT
TGATGTAATAAAGTTCCAATACAATTTCTTCGTCAACAATGCGTTCAACC
ACATGAACAAATCTGCCACTGGATGGATCAAACTTTGTTTTCTTTTTTTG
AACCTCTGATTGGGAATACTGAATATCAATATTCAGGAATTTGCGCTCGT
ATTCACTCTGTTCTTTGTTGAAATTGATAACATAAATTCGAGTGCTCTCT
TTAAAATCGTCAGTTTGAACCAAGTATGAAATTGGAAACATCANACATAA
ATTCGAGTGCTCTCTTTAAAATCGTCAGTTTGAACCAAGTTTGAAAATCG
AAACATCGTGCCATCATCAATTTCAAGAAGTAAGAAATATTCACCAGTAC
CATAAAATCCTTGAGTGTATAATATGGGTTCAAACCGATCGCCCAAACAA
AGTGTTGTTATCTTATTAACATTGGTTCCTTGCGGAACAAACATTGCCTT
CTTGATATTATTCATATTTCACCTGAAAAATATCAGAAACAACTATTACA
CGTTTTTTATAAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068224-exon-scaffold_480-1575043694:103349..104779 | TCONS_00068224-exon-scaffold_480-1575043694:103349..104779 | Clytia hemisphaerica | exon |
| TCONS_00068224-exon-scaffold_480-1575043694:103013..103283 | TCONS_00068224-exon-scaffold_480-1575043694:103013..103283 | Clytia hemisphaerica | exon |
| TCONS_00068224-exon-scaffold_480-1510915933:103349..104779 | TCONS_00068224-exon-scaffold_480-1510915933:103349..104779 | Clytia hemisphaerica | exon |
| TCONS_00068224-exon-scaffold_480-1510915933:103013..103283 | TCONS_00068224-exon-scaffold_480-1510915933:103013..103283 | Clytia hemisphaerica | exon |
| TCONS_00068224-exon-scaffold_480-1491911889:103349..104779 | TCONS_00068224-exon-scaffold_480-1491911889:103349..104779 | Clytia hemisphaerica | exon |
| TCONS_00068224-exon-scaffold_480-1491911889:103013..103283 | TCONS_00068224-exon-scaffold_480-1491911889:103013..103283 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:103013..104779 - |
Blast
The following BLAST results are available for this feature:
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