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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068220 ID=TCONS_00068220|Name=TCONS_00068220|organism=Clytia hemisphaerica|type=transcript|length=944bp
ACGCTTCCAAATAGTCGCACATGGAGATCATAGtaattaaaatattctta
aaagttacTTAATTACTTAGTTTCGGCTTTTGTCACAATTTGTATAAATA
GTGATCAAAAAATGGAGAATTCATCATCAAACGTTTTCAACCTTCTTCAA
GTGAAGTGGATTTGCTGAACAAGAAATATCTTCAAACAACAATTTATAAC
AGATGTACTTGAAAGGTGTTCTGTGCCTCTTGGCACTGTACCAAGTCCAA
TGTTATATCAAGCATGAAGAAGGACGAGGACCAATGTACAAGCTAAGTGC
TGTTAAAGACACCTTCTTGGAAAGATATGGTGTCTCTTGGGATAGACCGT
CATTTGCTCAAAACCTTATTGGTAGACATCGTCAATATCCTGTCAAAAGA
ACCCTCATCCAATTCGAAAACCTCCCAGCAAGTGTATGCCCTGTTGGAAA
GATCGAATGGGCTAAAATCTACATGTATTTCGTCTATCGCCACCGTCCAA
GTTGGCACACATCTTCATCTTCACCTTGGCTCGACTACGAAATCAACGTT
CACCGTGTGAAACGATCCTGGGAAGAGAGCTATGCCCGACCCCGATACCG
ATGTCGATCCTGCCCACAGAGTGCCTGGTATGCTCCATATTTGGATCTTG
GTCGTGATGCAGTCAACGAGCCAGAATGTAAGAAAACCACAATCTACTCT
TGGACACCAAGACCATCTTGGGTAGCTTTTGATGTGACTGGTTCAATGAA
AGCTTGGGCTGAAGGTTCACCCAATTATGGAGTTTTGATCAAAGTCAAAG
ATGAGAAAACCGATGGTGTTGATTTGAGATTCTGGAATCGACACTACAGT
GATGCAAAGCTTCGTCCATACGTAATTgttcaatgtaaaaaataaactgt
tatttttttgaaatttcttttgtatcATATAAAGTATTGCAAAG Run BLAST on NCBI protein sequence of TCONS_00068220-protein >TCONS_00068220-protein ID=TCONS_00068220-protein|Name=TCONS_00068220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MYLKGVLCLLALYQVQCYIKHEEGRGPMYKLSAVKDTFLERYGVSWDRPS
FAQNLIGRHRQYPVKRTLIQFENLPASVCPVGKIEWAKIYMYFVYRHRPS
WHTSSSSPWLDYEINVHRVKRSWEESYARPRYRCRSCPQSAWYAPYLDLG
RDAVNEPECKKTTIYSWTPRPSWVAFDVTGSMKAWAEGSPNYGVLIKVKD
EKTDGVDLRFWNRHYSDAKLRPYVIVQCKK Run BLAST on NCBI transcript from alignment at scaffold_480:9341..10524- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068220 ID=TCONS_00068220|Name=TCONS_00068220|organism=Clytia hemisphaerica|type=transcript|length=1184bp|location=Sequence derived from alignment at scaffold_480:9341..10524- (Clytia hemisphaerica)
ACGCTTCCAAATAGTCGCACATGGAGATCATAGTAATTAAAATATTCTTA
AAAGTTACTTAATTACTTAGTTTCGGCTTTTGTCACAATTTGTATAAATA
GTGATCAAAAAATGGAGAATTCATCATCAAACGTTTTCAACCTTCTTCAA
GTGAAGTGGATTTGCTGAACAAGAAATATCTTCAAACAACAATTTATAAC
GTGAGTGGTACAGCCAGTTATTGCTTAAATGTGAACGAGATAGGCTTCTT
ATTTCAAATTTAACGTGCCTCCAAGAGGAAAGTCGTTCATTCGAAAGGAA
GTTTATTGAATTGAAAATTCTTTTAATTAAGGAGGGGCGTTTATTCAAGA
GGGGTATTAAAAAGAACATTCGAAGGGGGAAACCAATAACTTGTTTTTTT
GCAGCCCTAATACTAAATCCTAATCATTCTTTCTTTATAGAGATGTACTT
GAAAGGTGTTCTGTGCCTCTTGGCACTGTACCAAGTCCAATGTTATATCA
AGCATGAAGAAGGACGAGGACCAATGTACAAGCTAAGTGCTGTTAAAGAC
ACCTTCTTGGAAAGATATGGTGTCTCTTGGGATAGACCGTCATTTGCTCA
AAACCTTATTGGTAGACATCGTCAATATCCTGTCAAAAGAACCCTCATCC
AATTCGAAAACCTCCCAGCAAGTGTATGCCCTGTTGGAAAGATCGAATGG
GCTAAAATCTACATGTATTTCGTCTATCGCCACCGTCCAAGTTGGCACAC
ATCTTCATCTTCACCTTGGCTCGACTACGAAATCAACGTTCACCGTGTGA
AACGATCCTGGGAAGAGAGCTATGCCCGACCCCGATACCGATGTCGATCC
TGCCCACAGAGTGCCTGGTATGCTCCATATTTGGATCTTGGTCGTGATGC
AGTCAACGAGCCAGAATGTAAGAAAACCACAATCTACTCTTGGACACCAA
GACCATCTTGGGTAGCTTTTGATGTGACTGGTTCAATGAAAGCTTGGGCT
GAAGGTTCACCCAATTATGGAGTTTTGATCAAAGTCAAAGATGAGAAAAC
CGATGGTGTTGATTTGAGATTCTGGAATCGACACTACAGTGATGCAAAGC
TTCGTCCATACGTAATTGTTCAATGTAAAAAATAAACTGTTATTTTTTTG
AAATTTCTTTTGTATCATATAAAGTATTGCAAAG Coding sequence (CDS) from alignment at scaffold_480:9341..10524- >TCONS_00068220 ID=TCONS_00068220|Name=TCONS_00068220|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_480:9341..10524- (Clytia hemisphaerica)
ATGTACTTGAAAGGTGTTCTGTGCCTCTTGGCACTGTACCAAGTCCAATG
TTATATCAAGCATGAAGAAGGACGAGGACCAATGTACAAGCTAAGTGCTG
TTAAAGACACCTTCTTGGAAAGATATGGTGTCTCTTGGGATAGACCGTCA
TTTGCTCAAAACCTTATTGGTAGACATCGTCAATATCCTGTCAAAAGAAC
CCTCATCCAATTCGAAAACCTCCCAGCAAGTGTATGCCCTGTTGGAAAGA
TCGAATGGGCTAAAATCTACATGTATTTCGTCTATCGCCACCGTCCAAGT
TGGCACACATCTTCATCTTCACCTTGGCTCGACTACGAAATCAACGTTCA
CCGTGTGAAACGATCCTGGGAAGAGAGCTATGCCCGACCCCGATACCGAT
GTCGATCCTGCCCACAGAGTGCCTGGTATGCTCCATATTTGGATCTTGGT
CGTGATGCAGTCAACGAGCCAGAATGTAAGAAAACCACAATCTACTCTTG
GACACCAAGACCATCTTGGGTAGCTTTTGATGTGACTGGTTCAATGAAAG
CTTGGGCTGAAGGTTCACCCAATTATGGAGTTTTGATCAAAGTCAAAGAT
GAGAAAACCGATGGTGTTGATTTGAGATTCTGGAATCGACACTACAGTGA
TGCAAAGCTTCGTCCATACGTAATTGTTCAATGTAAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068220-exon-scaffold_480-1575043694:10325..10524 | TCONS_00068220-exon-scaffold_480-1575043694:10325..10524 | Clytia hemisphaerica | exon |
| TCONS_00068220-exon-scaffold_480-1575043694:9341..10084 | TCONS_00068220-exon-scaffold_480-1575043694:9341..10084 | Clytia hemisphaerica | exon |
| TCONS_00068220-exon-scaffold_480-1510915933:10325..10524 | TCONS_00068220-exon-scaffold_480-1510915933:10325..10524 | Clytia hemisphaerica | exon |
| TCONS_00068220-exon-scaffold_480-1510915933:9341..10084 | TCONS_00068220-exon-scaffold_480-1510915933:9341..10084 | Clytia hemisphaerica | exon |
| TCONS_00068220-exon-scaffold_480-1491911889:10325..10524 | TCONS_00068220-exon-scaffold_480-1491911889:10325..10524 | Clytia hemisphaerica | exon |
| TCONS_00068220-exon-scaffold_480-1491911889:9341..10084 | TCONS_00068220-exon-scaffold_480-1491911889:9341..10084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:9341..10524 - |
Blast
The following BLAST results are available for this feature:
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