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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068211 ID=TCONS_00068211|Name=TCONS_00068211|organism=Clytia hemisphaerica|type=transcript|length=1450bp
ccTCACTCTTATAATCGCAAAAAACATTCAACGAAGACTGTAAGCAGAAA
TTAAGTAATGTTCTCTGCGAGAATACAAATGGACATGCATAAAGTAATAA
TTTGTAGCTTAATGGTTTCCCTTATCATTAATGGGAATCTTGCACAAGAA
ATGCAACTTAACTCTCATTTTCGcctggaaaaagaaaattacatcATCAA
AAATGGCTCTCATATACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAA
TTGAATGCTTGTTAAAATGTCAACTCAATTATTTGGCGTGCTTCACTCTT
GAAATTCTGAAGTTGGGTTTAACAAGCTGGTTGTGTCGATTTTACAATGT
CGATTTCATGAAATTGAGTTATGAATCAAAAGAGGGGTCAATGGTTTATT
CTACTACTGCACGAAGTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTG
GATGGTGTGTATAAAATACTGACCGTTGGAGAAGAAAAAGAAGTCTTTTG
TGATATGACAGGTGGCGGTTGGACAATGATTCAACGCCGATTAAACGGTG
ACATTGATTTCAATCGAGGTTGGCAATCATACAAAGAAGGCTTTGGTGAT
GTCAATGGTGATTTTTGGATTGGTTTGGAAACCATTCGAGAAATGAGTGT
GTTGTTGAACAACACTTTGATTCGAATTCAAGGTGAAAGTTTTAACGAAG
ATCGAAGATTTATCATTGCAAAGGGATTCTACATCGAAGACGAACAAAAG
AAATACAAATTGCATGCTGGGACAATGATCAATGATGAATGGGATATCGG
ACATGATTGGACATATCATGGTGGTTCAATGTTCACAACACGGGATGACG
ATAATGATAAAAAAGGTGGTAGCAATTGTGCACAAAAATATCCTTGTGCT
TGGTGGTATGTGAATTGTTATGCATTGAATGCTAACAGAGCACcagcaaa
acaacaacaaacaacatATGCAGACGGTATCAGCTGGCCCGCCTGGTTGG
GCGATTTCCAATCGTTGAAAACCATAAATATGgcaataaagaaaatgaat
tgaATGTCTTATTGATGtattctaaaaagattttatttatataaattctg
ttcaacttttttttgaaaaatcatattAAGTTTGTATGTAAAATTTGTGT
TTTATGTTCTAGTATGGTATTTTGCATTAGATTTTCATTCCAGAAACAGT
CAATTGTCTCaagtttacattttatttcaattGCTAACACACCCTTTGTT
AACCTATCCGTTCaccaaattttgaagaaaagttcAGATAGAGGCTCAGA
TTATTCAACATTCTTCAGAACGCTTTCCCAATAAAAAGAGTCAGAATTTC
AACCAAGAGTTCACCGatacccagctggtacacaacattgtttccacGTT
CATCTagcattcacaacgtccatttaacgttggattaacgttgaaataac Run BLAST on NCBI transcript from alignment at scaffold_480:48691..50784+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068211 ID=TCONS_00068211|Name=TCONS_00068211|organism=Clytia hemisphaerica|type=transcript|length=2094bp|location=Sequence derived from alignment at scaffold_480:48691..50784+ (Clytia hemisphaerica)
ccTCACTCTTATAATCGCAAAAAACATTCAACGAAGACTGTAAGCAGAAA
TTAAGTAATGTTCTCTGCGAGAATACAAATGGACATGCATAAAGTAATAA
TTTGTAGCTTAATGGTTTCCCTTATCATTAATGGGAATCTTGCACAAGAA
ATGCAACTTAACTCTCATTTTCGcctggaaaaagaaaattacatcATCAA
AAATGGCTCTCATATACCATCAGAAGAATTTGTTATCAAAGGCTCGGAAA
TTGAATGCTTGTTAAAATGTCAACTCAATTATTTGGCGTGCTTCACTCTT
GAAATTCTGAAGTTGGGTTTAACAAGCTGGTTGTGTCGATTTTACAATGT
CGATTTCATGAAATTGAGTTATGAATCAAAAGAGGGGTCAATGGTTTATT
CTACTACTGCACGAAGTTGTTTAGAATGGTTGGAAAGAGGCTTCACATTG
GATGGTGTGTATAAAATACTGACCGTTGGAGAAGAAAAAGAAGTCTTTTG
TGATATGACAGGTAAATATAGTTAAGTTATAGTTAATTAATTTTCTAGCC
TAGACTATACAGAGCTTTTCATTGACTGAACAATTGAATAGCAAAGTGAA
ACTGAACCAAATACTAAGGGAGTATCTTCAAATTTCTCTTGGCAAGCAAA
AGTGATGCCTTAAAATTTGAGTAACATTTCGGATGATGGATCGAGTTTAG
CACTTCCTTAGTTTTCGTGTTTTAAATTATTCGAGTTCTGGGGGTAAAAG
TTAGTTTCAATCCAGCATTTGTATGAAATCTTTGCATGTCGCACAGCTAA
AGTGGGATAAAAGTGCCTTGAAATCCGGTATAAGAGATTCACCTTTAGCT
TCCACTTTACCTTATTGAACTATACCAACTAATCCATCGACTAAAGAAAC
AgagttttcaataaaaacccATTGATTCTTTAACAATACCTTTAACGTAC
CTGTATTGCAGTAAACCGCGACAAGCAGACTCTTATTCTCAAGATTTCTT
TTCGTTATAACCTGTTCGCTTGTGTGTTTTAGGTGGCGGTTGGACAATGA
TTCAACGCCGATTAAACGGTGACATTGATTTCAATCGAGGTTGGCAATCA
TACAAAGAAGGCTTTGGTGATGTCAATGGTGATTTTTGGATTGGTTTGGA
AACCATTCGAGAAATGAGTGTGTTGTTGAACAACACTTTGATTCGAATTC
AAGGTGAAAGTTTTAACGAAGATCGAAGATTTATCATTGCAAAGGTAAAA
TAATTGGTTATTTGCATTCTTACTTATTCTGGCGTTTTATTTCTAAGTAC
TCCACTGATTCTTAACGTTTAAAATGTCATCAGAAGTTTTTCTAATCATT
TCCCGTTTAATGAATAGGGATTCTACATCGAAGACGAACAAAAGAAATAC
AAATTGCATGCTGGGACAATGATCAATGATGAATGGGATATCGGACATGA
TTGGACATATCATGGTGGTTCAATGTTCACAACACGGGATGACGATAATG
ATAAAAAAGGTGGTAGCAATTGTGCACAAAAATATCCTTGTGCTTGGTGG
TATGTGAATTGTTATGCATTGAATGCTAACAGAGCACcagcaaaacaaca
acaaacaacatATGCAGACGGTATCAGCTGGCCCGCCTGGTTGGGCGATT
TCCAATCGTTGAAAACCATAAATATGgcaataaagaaaatgaattgaATG
TCTTATTGATGtattctaaaaagattttatttatataaattctgttcaac
ttttttttgaaaaatcatattAAGTTTGTATGTAAAATTTGTGTTTTATG
TTCTAGTATGGTATTTTGCATTAGATTTTCATTCCAGAAACAGTCAATTG
TCTCaagtttacattttatttcaattGCTAACACACCCTTTGTTAACCTA
TCCGTTCaccaaattttgaagaaaagttcAGATAGAGGCTCAGATTATTC
AACATTCTTCAGAACGCTTTCCCAATAAAAAGAGTCAGAATTTCAACCAA
GAGTTCACCGatacccagctggtacacaacattgtttccacGTTCATCTa
gcattcacaacgtccatttaacgttggattaacgttgaaataac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068211-exon-scaffold_480-1491911889:48691..49201 | TCONS_00068211-exon-scaffold_480-1491911889:48691..49201 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1510915933:48691..49201 | TCONS_00068211-exon-scaffold_480-1510915933:48691..49201 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1575043694:48691..49201 | TCONS_00068211-exon-scaffold_480-1575043694:48691..49201 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1491911889:49723..49934 | TCONS_00068211-exon-scaffold_480-1491911889:49723..49934 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1510915933:49723..49934 | TCONS_00068211-exon-scaffold_480-1510915933:49723..49934 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1575043694:49723..49934 | TCONS_00068211-exon-scaffold_480-1575043694:49723..49934 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1491911889:50058..50784 | TCONS_00068211-exon-scaffold_480-1491911889:50058..50784 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1510915933:50058..50784 | TCONS_00068211-exon-scaffold_480-1510915933:50058..50784 | Clytia hemisphaerica | exon |
| TCONS_00068211-exon-scaffold_480-1575043694:50058..50784 | TCONS_00068211-exon-scaffold_480-1575043694:50058..50784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:48691..50784 + |
Blast
BLAST of TCONS_00068211 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 142.124 bits (357), Expect = 9.155e-38 Identity = 82/222 (36.94%), Postives = 121/222 (54.50%), Query Frame = 1
Query: 388 SMVYSTTARSCLEWLERGFTLDGVYKI-LTVGEEKEVFCDMT--GGGWTMIQRRLNGDIDFNRGWQSYKEGFGDVNGDFWIGLETIREMSVLLNNTLIRIQGESFNEDRRFIIAKGFYIEDEQKKYKLHAGTMINDEWDIGHDWTYHGGSMFTTRDDDNDKKGGSNCAQKYPCAWWYVNCYALNANRAPAKQQQTTYADGISWPAWLGDFQSLKTINMAIKK 1044
S +T R+C + L+RG+ L G + I L V CDM GGGWT+ QRR++G +DF R W +YK+GFG G+FW+G + I ++ ++ +R+ F + +F K F + DE +KYKL G + G+ T H + F+T+D DND SNCA+K+ AWWY +C+A N N +YA+GI+W A G S K M ++
Sbjct: 108 SQSCATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTA-QGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS--AGNSLTGHNNNFFSTKDQDNDVS-SSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVRP 325
The following BLAST results are available for this feature:
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