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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068202 ID=TCONS_00068202|Name=TCONS_00068202|organism=Clytia hemisphaerica|type=transcript|length=2199bp
GAGAGAGAGTTTTGGTAAGGTACATATCAGAAACATTCCGACCATGGTAT
TCAAACAGCGACATTTCATCAACCTTCACAAAATCACCACCCCGTTTGTT
ATACTACTTTTAATGGaacattataagaactataCTATTGGACCTATCGT
ATATTTTGGTCTACACACTGGTTATTGTGTATGCTGGCTATTCAAAGAAG
CAATATATCCTGACCCTGCGTTTAATGCTGAAATGAATATTCTGGAATTT
GTTTCTGCGTATTGTGTATTGGGCGTTTACTGGATAGCGCCCTATGTTTT
GATTAGCTCGCGTATTGTGCCACATTTGGTGACTCTTTTGACTGCAGTTC
CGATATGTTTGGTTggatttttctttcactttggAGCCGATTCTCAGAAA
TATTTCATCTTGAAAACGAAGAAAGGTCTTATCACGGATGGTTTTTTCTC
GCGCACGCGTAATCCGAATTTCTTGGGTGAAGTGTTGATTTATTTTGGTT
GGAGCATATTAGCGGAAAGTATTACACCGCTCGCTGTGCTATTGTTAATG
ATTACAGTTTTGTTTTATCCGAGAatgttaaagaaagaaaaatctttgTC
TAGGTATCCAGAATTTCAAGAGTATAAGTTGAGAACTAACTTTATTGTTC
CTAGATTATTTTAATTACAATTATCTTTTTATCACAATTTAGAAATGCCT
TCTCTCGTAACAAAACATGCAGCTGCACACAAAATTTAGCTGCCAAAATT
TGGATAAAATTGCGAAGATTAATCCACATGTATGCCTATAAAGCTAGTTG
TCTTGAGTTGATATCAAATTGCGGTCAATTTACAtttctaattgtttttt
tttNTTGGGCGTTTACTGGATAGCGCCCTATGTTTTGATTAGCTCGCGTA
TTGTGCCCCATTTGGTGACTCTTTTGACTGCAGTTCCGATATGTTTGGTT
ggatttttctttcactttggAGCCGATTCTCAGAAATATTTCATCTTGAA
AACGAAGAAAGGTCTTATCACGGATGGTTTTTTCTCGCGCACGCGTAATC
CGAATTTCTTGGGTGAAGTGTTGATTTATTTTGGTTGGAGCATATTAGCG
GAAAGTATTACACCGCTCGCTGTGCTATTGTTAATGATTACAGTTTTGTT
TTATCCGAGAatgttaaagaaagaaaaatctttgTCTAGGTATCCAGAAT
TTCAAGAGTATAAGTTGAGAACTAACTTTATTGTTCCTAGATTATTTTAA
ttataattatatttttatcaCAATTTAGAAATGCCTTCTCTCATAACAAA
ACATGCAGCTGCACACAAAAATTAGCTGCCAAAATTTGGATAAAATTGCG
AAGATTAATCCACATGTATGCCTATAAAGCTAGTTCTCTTGAGTTGATAT
CAAATTGCGGTCAATTTACAtttctaattgttttttttttgacaaggTCA
AGTGTACACAGAGTATTATTTCAAACATCATGTGTGGTAACAGGTATTGA
AAAGTTGCATAACTTTCAAATTATAATATTTTCGTATTATATACTTTCGT
ATTATATTTTTAACCCGTTGTGGGAGGGTTGGAGGTGCTAACTGGGGCTG
GTTTGCCGTCAGACGACTGACTCTTCTCTAGACTTGTCGACCTAAAAACT
TTTATTGCTATTTCGacgaagagaatttttttttcttcagaaattacaaa
atgtaaacaaaaattccaTTAATGACCAAAATGAAAAACAGACTGACcta
cctccaaaatctagggtagAGTGACGGCAAATCAAGAATTCAATTCCAGC
CTGGACATCCGAATCCTGCCCCTATAGTCTAATTTTCCTGAAGAGGTATC
TTTTTGACCCCATTTACAAACTTTTGGAATGAAAGTTTTTGGCAACGAAA
CCTGAACCTTGCGGATTCCTTCCAAACTCGCCAAAGCTGTTTGAAACGAT
TTAGCTAATTTATATGACTTTGTTaatgagataattttaaattcTAATGT
TTATAAAATAATAGAAGATATAAATAGATTGATGGATATATTTTTTATAG
TTTATAATAGTATTTttattggaaaatatttttcaaaatttgaattttat
ggaTAGTATACAAAATTAAGAGTTAAGTCCAAATTTACTGCATTTTCACA
TCAATTATGTTTGTCAAAAGGTATTTCAAGTAAAAGCTATACATAAGCC Run BLAST on NCBI protein sequence of TCONS_00068202-protein >TCONS_00068202-protein ID=TCONS_00068202-protein|Name=TCONS_00068202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
RESFGKVHIRNIPTMVFKQRHFINLHKITTPFVILLLMEHYKNYTIGPIV
YFGLHTGYCVCWLFKEAIYPDPAFNAEMNILEFVSAYCVLGVYWIAPYVL
ISSRIVPHLVTLLTAVPICLVGFFFHFGADSQKYFILKTKKGLITDGFFS
RTRNPNFLGEVLIYFGWSILAESITPLAVLLLMITVLFYPRMLKKEKSLS
RYPEFQEYKLRTNFIVPRLF Run BLAST on NCBI transcript from alignment at scaffold_480:3584..7718+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068202 ID=TCONS_00068202|Name=TCONS_00068202|organism=Clytia hemisphaerica|type=transcript|length=4135bp|location=Sequence derived from alignment at scaffold_480:3584..7718+ (Clytia hemisphaerica)
GAGAGAGAGTTTTGGTAAGGTATGTGATAATATGATAATTGGTTAAGGTT
ACTTAACTTGTCTCGAACCtgtttcgttaattttttcgtGGTCAGGTAAT
TTCGTGTAGTTTGTACCGAAATCGAAAGTTATAGAAGACAtttttagctc
tagtttagacggccgactttctgcctactttaattcacaattagattagg
cagggcgaaaagtgggccgtctaaactagagcttagccTTGAGCATCACT
TAATGCTGGGTCGTCTTTCGAAGATAGTTTCATGTAGCTTGCGCCAAAAT
AGAAAATGGACTGTACTAACCTAAAGGCTttgggacacgagaagtttttt
tcgtgttggtgtaatgcaacatgctccatcccaccaacttaaaacgcttt
ctcgtgtctccaccccatttttctttttgtgctTCTCTTACTtgtgtccc
agggacaaaatcagcgtgtcttttgggtatttccctcactttttgtccca
tgaaacaaaaaaaagaaaccatgagacacacttttttcttgtgttggtgg
gatggagcatgttgcattgcaccaacgtgaaaaaaacttctcgtgtcccc
aagcctttaggtTACATATTGAAatgtaattttttgttttttttgtcaag
aaATGTTGTCTCTCCGACCAACTGCAtcaatttttgtaaatagaCCTCCA
GGACAGAATTTGCAACAGTAATTAGCTGTAATATGTAATAACATAAGTTA
TGTGCCTACTCAAGAATATTTAGAAGATCAATAATAATTGCTTTGTGTCA
TCTAAGTTGTTCTTAATTTAACTGATCGTTCATCTGTTATTTGTGTGAAG
TTTATTTGTCATCTGTATATATGCTCACCTAAACCAGCCTAAACTAAACA
CTGTCTGGAAAAAATTATCAGGTATTTTAAGCCCgagggggggggactta
ggcaaatggagggtacggtatgtgccgcccttaagggtaccttctttgga
cttccaaaggcccgctaagggtcgggaaaccaattttgttactttttcta
aagaatgcgtcatctctattatttcaaataaccaattagtgaagtctctt
gtaaaaactccagcccatcccaaaaattggtcaaatttgtcccgctaagg
gtcgtaaaattcccaaaattttcctttgttttctcctttttagtcccggt
aagggtccaaagttcgaaagtcgggcggcaccccccccccatcagctcgc
aaccctagtcccccccccccccccctcccggtATTTTAAGCCTGTATTAC
ATTACCAAATGCAATACTTCTAGTGTGAAGAAGTTAAAGAGTTAAGAAGT
TTAGACCTTTTAAATATAattcattgtgaaaaaaatgTAACCGTTCTCAT
TTTATAAACTGATAACAAAAGACATTTACCGACCAACAACAAGAACATTC
ATTCCGCCAAACTTTCTATTTAGATTTCTAGCTGGCATGAAACGTTAATA
TAACATCTGTCGAACGTCCATAACTTGATGTTCGAAATCTATCCTTTATA
ACATCCATATAATGTCAAACTCGAACCTagtgggaagaaattttggcggg
aatttaatttggtggatgaaggacatttttctccaaaaaaagtcatttaa
ataagaaaataaaacctgttttaaggcctgaaatagcacacaatacaata
attttaatttggtggatggcgggaaaatttaaatttggcgggaactttaT
TTGGtggattttgaccaaatttttttcccgccaaaatttcttctcatgAT
TAACCTTATTTCGCACTTTTAATGGTCTTGATAGCGTTCACGCTTGTATC
AAACATTCATCAGTAAAACCAACAAGGTCATGCAAATGGGTCTGGGTCGG
AGATAGAAATATGAATTTGAAACAACGTTGATATTTCCCTTATTTCTATT
TTCAGGTACATATCAGAAACATTCCGACCATGGTATTCAAACAGCGACAT
TTCATCAACCTTCACAAAATCACCACCCCGTTTGTTATACTACTTTTAAT
GGaacattataagaactataCTATTGGACCTATCGTATATTTTGGTCTAC
ACACTGGTTATTGTGTATGCTGGCTATTCAAAGAAGCAATATATCCTGAC
CCTGCGTTTAATGCTGAAATGAATATTCTGGAATTTGTTTCTGCGTATTG
TGTATTGGGCGTTTACTGGATAGCGCCCTATGTTTTGATTAGCTCGCGTA
TTGTGCCACATTTGGTGACTCTTTTGACTGCAGTTCCGATATGTTTGGTT
ggatttttctttcactttggAGCCGATTCTCAGAAATATTTCATCTTGAA
AACGAAGAAAGGTCTTATCACGGATGGTTTTTTCTCGCGCACGCGTAATC
CGAATTTCTTGGGTGAAGTGTTGATTTATTTTGGTTGGAGCATATTAGCG
GAAAGTATTACACCGCTCGCTGTGCTATTGTTAATGATTACAGTTTTGTT
TTATCCGAGAatgttaaagaaagaaaaatctttgTCTAGGTATCCAGAAT
TTCAAGAGTATAAGTTGAGAACTAACTTTATTGTTCCTAGATTATTTTAA
TTACAATTATCTTTTTATCACAATTTAGAAATGCCTTCTCTCGTAACAAA
ACATGCAGCTGCACACAAAATTTAGCTGCCAAAATTTGGATAAAATTGCG
AAGATTAATCCACATGTATGCCTATAAAGCTAGTTGTCTTGAGTTGATAT
CAAATTGCGGTCAATTTACAtttctaattgtttttttttNTTGGGCGTTT
ACTGGATAGCGCCCTATGTTTTGATTAGCTCGCGTATTGTGCCCCATTTG
GTGACTCTTTTGACTGCAGTTCCGATATGTTTGGTTggatttttctttca
ctttggAGCCGATTCTCAGAAATATTTCATCTTGAAAACGAAGAAAGGTC
TTATCACGGATGGTTTTTTCTCGCGCACGCGTAATCCGAATTTCTTGGGT
GAAGTGTTGATTTATTTTGGTTGGAGCATATTAGCGGAAAGTATTACACC
GCTCGCTGTGCTATTGTTAATGATTACAGTTTTGTTTTATCCGAGAatgt
taaagaaagaaaaatctttgTCTAGGTATCCAGAATTTCAAGAGTATAAG
TTGAGAACTAACTTTATTGTTCCTAGATTATTTTAAttataattatattt
ttatcaCAATTTAGAAATGCCTTCTCTCATAACAAAACATGCAGCTGCAC
ACAAAAATTAGCTGCCAAAATTTGGATAAAATTGCGAAGATTAATCCACA
TGTATGCCTATAAAGCTAGTTCTCTTGAGTTGATATCAAATTGCGGTCAA
TTTACAtttctaattgttttttttttgacaaggTCAAGTGTACACAGAGT
ATTATTTCAAACATCATGTGTGGTAACAGGTATTGAAAAGTTGCATAACT
TTCAAATTATAATATTTTCGTATTATATACTTTCGTATTATATTTTTAAC
CCGTTGTGGGAGGGTTGGAGGTGCTAACTGGGGCTGGTTTGCCGTCAGAC
GACTGACTCTTCTCTAGACTTGTCGACCTAAAAACTTTTATTGCTATTTC
Gacgaagagaatttttttttcttcagaaattacaaaatgtaaacaaaaat
tccaTTAATGACCAAAATGAAAAACAGACTGACctacctccaaaatctag
ggtagAGTGACGGCAAATCAAGAATTCAATTCCAGCCTGGACATCCGAAT
CCTGCCCCTATAGTCTAATTTTCCTGAAGAGGTATCTTTTTGACCCCATT
TACAAACTTTTGGAATGAAAGTTTTTGGCAACGAAACCTGAACCTTGCGG
ATTCCTTCCAAACTCGCCAAAGCTGTTTGAAACGATTTAGCTAATTTATA
TGACTTTGTTaatgagataattttaaattcTAATGTTTATAAAATAATAG
AAGATATAAATAGATTGATGGATATATTTTTTATAGTTTATAATAGTATT
TttattggaaaatatttttcaaaatttgaattttatggaTAGTATACAAA
ATTAAGAGTTAAGTCCAAATTTACTGCATTTTCACATCAATTATGTTTGT
CAAAAGGTATTTCAAGTAAAAGCTATACATAAGCC Coding sequence (CDS) from alignment at scaffold_480:3584..7718+ >TCONS_00068202 ID=TCONS_00068202|Name=TCONS_00068202|organism=Clytia hemisphaerica|type=CDS|length=1326bp|location=Sequence derived from alignment at scaffold_480:3584..7718+ (Clytia hemisphaerica)
AGAGAGAGTTTTGGTAAGGTACATATCAGAAACATTCCGACCATGGTATT
CAAACAGCGACATTTCATCAACCTTCACAAAATCACCACCCCGTTTGTTA
TACTACTTTTAATGGaacattataagaactataCTATTGGACCTATCGTA
TATTTTGGTCTACACACTGGTTATTGTGTATGCTGGCTATTCAAAGAAGC
AATATATCCTGACCCTGCGTTTAATGCTGAAATGAATATTCTGGAATTTG
TTTCTGCGTATTGTGTATTGGGCGTTTACTGGATAGCGCCCTATGTTTTG
ATTAGCTCGCGTATTGTGCCACATTTGGTGACTCTTTTGACTGCAGTTCC
GATATGTTTGGTTggatttttctttcactttggAGCCGATTCTCAGAAAT
ATTTCATCTTGAAAACGAAGAAAGGTCTTATCACGGATGGTTTTTTCTCG
CGCACGCGTAATCCGAATTTCTTGGGTGAAGTGTTGATTTATTTTGGTTG
GAGCATATTAGCGGAAAGTATTACACCGCTCGCTGTGCTATTGTTAATGA
TTACAGTTTTGTTTTATCCGAGAatgttaaagaaagaaaaatctttgTCT
AGGTATCCAGAATTTCAAGAGTATAAGTTGAGAACTAACTTTATTGTTCC
TAGATTATTTTAAAGAGAGAGTTTTGGTAAGGTACATATCAGAAACATTC
CGACCATGGTATTCAAACAGCGACATTTCATCAACCTTCACAAAATCACC
ACCCCGTTTGTTATACTACTTTTAATGGaacattataagaactataCTAT
TGGACCTATCGTATATTTTGGTCTACACACTGGTTATTGTGTATGCTGGC
TATTCAAAGAAGCAATATATCCTGACCCTGCGTTTAATGCTGAAATGAAT
ATTCTGGAATTTGTTTCTGCGTATTGTGTATTGGGCGTTTACTGGATAGC
GCCCTATGTTTTGATTAGCTCGCGTATTGTGCCACATTTGGTGACTCTTT
TGACTGCAGTTCCGATATGTTTGGTTggatttttctttcactttggAGCC
GATTCTCAGAAATATTTCATCTTGAAAACGAAGAAAGGTCTTATCACGGA
TGGTTTTTTCTCGCGCACGCGTAATCCGAATTTCTTGGGTGAAGTGTTGA
TTTATTTTGGTTGGAGCATATTAGCGGAAAGTATTACACCGCTCGCTGTG
CTATTGTTAATGATTACAGTTTTGTTTTATCCGAGAatgttaaagaaaga
aaaatctttgTCTAGGTATCCAGAATTTCAAGAGTATAAGTTGAGAACTA
ACTTTATTGTTCCTAGATTATTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068202-exon-scaffold_480-1491911889:3584..3602 | TCONS_00068202-exon-scaffold_480-1491911889:3584..3602 | Clytia hemisphaerica | exon |
| TCONS_00068202-exon-scaffold_480-1510915933:3584..3602 | TCONS_00068202-exon-scaffold_480-1510915933:3584..3602 | Clytia hemisphaerica | exon |
| TCONS_00068202-exon-scaffold_480-1575043694:3584..3602 | TCONS_00068202-exon-scaffold_480-1575043694:3584..3602 | Clytia hemisphaerica | exon |
| TCONS_00068202-exon-scaffold_480-1491911889:5539..7718 | TCONS_00068202-exon-scaffold_480-1491911889:5539..7718 | Clytia hemisphaerica | exon |
| TCONS_00068202-exon-scaffold_480-1510915933:5539..7718 | TCONS_00068202-exon-scaffold_480-1510915933:5539..7718 | Clytia hemisphaerica | exon |
| TCONS_00068202-exon-scaffold_480-1575043694:5539..7718 | TCONS_00068202-exon-scaffold_480-1575043694:5539..7718 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_480 | supercontig | scaffold_480:3584..7718 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005737 | cytoplasm |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006629 | lipid metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006629 |
lipid metabolic process |
| cellular_component |
GO:0005737 |
cytoplasm |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
Blast
The following BLAST results are available for this feature:
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