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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068201 ID=TCONS_00068201|Name=TCONS_00068201|organism=Clytia hemisphaerica|type=transcript|length=2051bp
GGCAATTTTAGAAAAGTTTAATGATAAAGAAATGGAGAATTGGCCACCGT
CAATTGACGAGCTTTCCAAAGATGAATGGAAACCACCAGCTAtcgttgaa
aattttgttgaaagtttACTTTGCTCATCTCCGTCACAGACACCAAAACA
AAAGCGTTGGATTGATTCATTGTCAAGCGATATTGTGCATCAAGTAACCA
ATGGCAAAACTATGCAACTTAAACAACTAGTGGTGGCAATGGGATTGACC
AATCTGACTGGGTCAAGAAAGGTATAATTAATTTTAACTTTCTTTGAAAG
CTCTTTATGAAAGTATGTACTTAAGACTTTTGTTTCACTCGTTAAGGTAT
TTTCTATACAAAATTAGTTTGGTTACACCTTTTCTAGTCATTCCTTCTTT
AATACTGTTCTGCCTTACAACTTTCTAGATCCACTTTCAAATCTGTATTA
AAATTCGAGACTTTCATAGTCTAGGCTAATAATTTTACAGTATCTTCTGC
ACTGCATAGTAACATTTTTCTTCTTATCCAGGTGATTGACGTCCTCAGCA
GCTTTGGACACAGCTTACCATATGGCATTGTATCAGATATCAAGACTGCA
GCCGCTGAAAGCGTTCTCATCAATACAAACAAACTACCAATCAAACCGGT
GTTCGCAGATTCGATCgcatcttcatttttttgggTTGATAACTTTGATA
TTCTTGTTGATAAACTCGTTGGTGGCAGCTCAATCAATACAACCCATTTA
ATGGCATTCCAGGAGAAAAGCGCAGATACCTTCAAAATCACCGAGCCCAA
AAATATTGGTCGCAAGAAAAGTCGGAAACTATCAGTAGCTGAAAATTCCT
GTCAAATCCAAGCTGTTAACACCAAACAAAATCCACCCACTAAATTCAAC
CAGACACAGACCAATTTTTCGGAAGAAAATTTTCATTTCCTGTACTTCAT
TTGGGCATATGGTAGGAAATATATGTCAACAGCAGATCAACAGCTAATTC
CATGCTTCAAAGGTTGGTTGGTCAAATACCGAACAGAAAAAGGAGCGACT
GTTGAGAAAACGTATGAAACCTTCTTACCGCCCATCAATGCAAAGGTTAC
AGAATTCGCAACGATTCAAAACTATCTGACGTACTTGCAAGATCTATCCA
AGTCTGTCAACATGGCCTACGTGAACGTGACATTAGATGTTGGAGCTGCA
ATTAACGCTTACAAAACGATTTGGTGTCATCCTGAACGATTTGGGAATGT
TATCATCCATTTGGGAAGTTTTCATTTTATCAAGGAAAACTTTAAGGTAT
GTTTAATATCATGGTTTATGTCATCAGAAAGTATAATGACAATGTTGACG
CCATTATCCAAGACAtccattttttacaaaaaaactgCTTAATGTTATTT
AACTTCTGTTACTTACAAATATAAATCCATCATTTTAGGTGATCGGCTCC
TTGGTTCAGGGCTCCGGCTTCGATGACATTGTATATCAATCAGGAATGAT
TCGGTCAGGAAGTCTTCAGGGTGTAATAAGCGGATCTCACTACAACCGTG
CATGGACGATCCATCAAGCTGTTGCAGAAGCCTTGGAGCGAGTTCTACTA
AAACGTTTTTGCCACCAGTACAAACACGATGTCCCTGACGATTTTTGTCA
TATGGTATGCAACATTAACGACGAGAATATGAAGAAGCTTACTGAAGGAA
CAAAACAAATCTTTACAAAGTACAAGCAATATCGAGACGATATTCGGAAT
GGTAAAAGTGGAAAAACACcacaattttggatgttctacaTCGACCTAAT
TCGATCTCAGATTTTAGCTCACGTTGCAGTTCAGACCAATGACATCGACA
TGCTTATTCATAGCTGGGAAACATTCATCCCTCTCTATTTTGCAACAAAC
AAACAGAACTATGCGAGGTAAGCAAGTAATTGATTCGTTCACATCATCAC
ACATCAACCGGGTTGCAGGGCTGTTTTATTGAAtattaaaatataatata
agaacgatcattaaaagaaaatattctaATGTTTTTCTTAGATACGGTTC
C Run BLAST on NCBI protein sequence of TCONS_00068201-protein >TCONS_00068201-protein ID=TCONS_00068201-protein|Name=TCONS_00068201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MAFQEKSADTFKITEPKNIGRKKSRKLSVAENSCQIQAVNTKQNPPTKFN
QTQTNFSEENFHFLYFIWAYGRKYMSTADQQLIPCFKGWLVKYRTEKGAT
VEKTYETFLPPINAKVTEFATIQNYLTYLQDLSKSVNMAYVNVTLDVGAA
INAYKTIWCHPERFGNVIIHLGSFHFIKENFKVCLISWFMSSESIMTMLT
PLSKTSIFYKKTA Run BLAST on NCBI transcript from alignment at scaffold_48:482900..484950 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068201 ID=TCONS_00068201|Name=TCONS_00068201|organism=Clytia hemisphaerica|type=transcript|length=2051bp|location=Sequence derived from alignment at scaffold_48:482900..484950 (Clytia hemisphaerica)
GGAACCGTATCTAAGAAAAACATtagaatattttcttttaatgatcgttc
ttatattatattttaataTTCAATAAAACAGCCCTGCAACCCGGTTGATG
TGTGATGATGTGAACGAATCAATTACTTGCTTACCTCGCATAGTTCTGTT
TGTTTGTTGCAAAATAGAGAGGGATGAATGTTTCCCAGCTATGAATAAGC
ATGTCGATGTCATTGGTCTGAACTGCAACGTGAGCTAAAATCTGAGATCG
AATTAGGTCGAtgtagaacatccaaaattgtgGTGTTTTTCCACTTTTAC
CATTCCGAATATCGTCTCGATATTGCTTGTACTTTGTAAAGATTTGTTTT
GTTCCTTCAGTAAGCTTCTTCATATTCTCGTCGTTAATGTTGCATACCAT
ATGACAAAAATCGTCAGGGACATCGTGTTTGTACTGGTGGCAAAAACGTT
TTAGTAGAACTCGCTCCAAGGCTTCTGCAACAGCTTGATGGATCGTCCAT
GCACGGTTGTAGTGAGATCCGCTTATTACACCCTGAAGACTTCCTGACCG
AATCATTCCTGATTGATATACAATGTCATCGAAGCCGGAGCCCTGAACCA
AGGAGCCGATCACCTAAAATGATGGATTTATATTTGTAAGTAACAGAAGT
TAAATAACATTAAGcagtttttttgtaaaaaatggaTGTCTTGGATAATG
GCGTCAACATTGTCATTATACTTTCTGATGACATAAACCATGATATTAAA
CATACCTTAAAGTTTTCCTTGATAAAATGAAAACTTCCCAAATGGATGAT
AACATTCCCAAATCGTTCAGGATGACACCAAATCGTTTTGTAAGCGTTAA
TTGCAGCTCCAACATCTAATGTCACGTTCACGTAGGCCATGTTGACAGAC
TTGGATAGATCTTGCAAGTACGTCAGATAGTTTTGAATCGTTGCGAATTC
TGTAACCTTTGCATTGATGGGCGGTAAGAAGGTTTCATACGTTTTCTCAA
CAGTCGCTCCTTTTTCTGTTCGGTATTTGACCAACCAACCTTTGAAGCAT
GGAATTAGCTGTTGATCTGCTGTTGACATATATTTCCTACCATATGCCCA
AATGAAGTACAGGAAATGAAAATTTTCTTCCGAAAAATTGGTCTGTGTCT
GGTTGAATTTAGTGGGTGGATTTTGTTTGGTGTTAACAGCTTGGATTTGA
CAGGAATTTTCAGCTACTGATAGTTTCCGACTTTTCTTGCGACCAATATT
TTTGGGCTCGGTGATTTTGAAGGTATCTGCGCTTTTCTCCTGGAATGCCA
TTAAATGGGTTGTATTGATTGAGCTGCCACCAACGAGTTTATCAACAAGA
ATATCAAAGTTATCAAcccaaaaaaatgaagatgcGATCGAATCTGCGAA
CACCGGTTTGATTGGTAGTTTGTTTGTATTGATGAGAACGCTTTCAGCGG
CTGCAGTCTTGATATCTGATACAATGCCATATGGTAAGCTGTGTCCAAAG
CTGCTGAGGACGTCAATCACCTGGATAAGAAGAAAAATGTTACTATGCAG
TGCAGAAGATACTGTAAAATTATTAGCCTAGACTATGAAAGTCTCGAATT
TTAATACAGATTTGAAAGTGGATCTAGAAAGTTGTAAGGCAGAACAGTAT
TAAAGAAGGAATGACTAGAAAAGGTGTAACCAAACTAATTTTGTATAGAA
AATACCTTAACGAGTGAAACAAAAGTCTTAAGTACATACTTTCATAAAGA
GCTTTCAAAGAAAGTTAAAATTAATTATACCTTTCTTGACCCAGTCAGAT
TGGTCAATCCCATTGCCACCACTAGTTGTTTAAGTTGCATAGTTTTGCCA
TTGGTTACTTGATGCACAATATCGCTTGACAATGAATCAATCCAACGCTT
TTGTTTTGGTGTCTGTGACGGAGATGAGCAAAGTaaactttcaacaaaat
tttcaacgaTAGCTGGTGGTTTCCATTCATCTTTGGAAAGCTCGTCAATT
GACGGTGGCCAATTCTCCATTTCTTTATCATTAAACTTTTCTAAAATTGC
C Coding sequence (CDS) from alignment at scaffold_48:482900..484950 >TCONS_00068201 ID=TCONS_00068201|Name=TCONS_00068201|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_48:482900..484950 (Clytia hemisphaerica)
TTAAGcagtttttttgtaaaaaatggaTGTCTTGGATAATGGCGTCAACA
TTGTCATTATACTTTCTGATGACATAAACCATGATATTAAACATACCTTA
AAGTTTTCCTTGATAAAATGAAAACTTCCCAAATGGATGATAACATTCCC
AAATCGTTCAGGATGACACCAAATCGTTTTGTAAGCGTTAATTGCAGCTC
CAACATCTAATGTCACGTTCACGTAGGCCATGTTGACAGACTTGGATAGA
TCTTGCAAGTACGTCAGATAGTTTTGAATCGTTGCGAATTCTGTAACCTT
TGCATTGATGGGCGGTAAGAAGGTTTCATACGTTTTCTCAACAGTCGCTC
CTTTTTCTGTTCGGTATTTGACCAACCAACCTTTGAAGCATGGAATTAGC
TGTTGATCTGCTGTTGACATATATTTCCTACCATATGCCCAAATGAAGTA
CAGGAAATGAAAATTTTCTTCCGAAAAATTGGTCTGTGTCTGGTTGAATT
TAGTGGGTGGATTTTGTTTGGTGTTAACAGCTTGGATTTGACAGGAATTT
TCAGCTACTGATAGTTTCCGACTTTTCTTGCGACCAATATTTTTGGGCTC
GGTGATTTTGAAGGTATCTGCGCTTTTCTCCTGGAATGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068201-exon-scaffold_48-1491911889:482900..484950 | TCONS_00068201-exon-scaffold_48-1491911889:482900..484950 | Clytia hemisphaerica | exon |
| TCONS_00068201-exon-scaffold_48-1510915933:482900..484950 | TCONS_00068201-exon-scaffold_48-1510915933:482900..484950 | Clytia hemisphaerica | exon |
| TCONS_00068201-exon-scaffold_48-1575043694:482900..484950 | TCONS_00068201-exon-scaffold_48-1575043694:482900..484950 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:482900..484950 . |
Blast
The following BLAST results are available for this feature:
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