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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068197 ID=TCONS_00068197|Name=TCONS_00068197|organism=Clytia hemisphaerica|type=transcript|length=2860bp
CCaaagttgtttttttgaaaacccaTATCACATACTTGTTGTTTGTTTTG
ACGGTCCAGCACATTGTTCTGTGACTTTTTCTTGGATATCAAGCATCATT
TTGTGTCTATagtaatttttattgtttttcctTGCCAAGAACAGAATATT
GTAAACCTTCCTTCCAAACAAAATCACTTGGAGCAGTGTGAAATTGAGGA
TGATGGCCAGTAAAATAGCGATACTCTCTTCCTGATATAGACTTTTCCTC
CTGTGATAGATGGTTGCAGGAAAATAAACAGCCAAGCCGAAGGACATGCC
AAAACTAGCGTATAGAATGGTCCAAGCATTACTGTAAATCGATGGAACAT
TTCTCGCACGAAATGATTGTATGAAGCAAAACAACTgaacaaaaatcata
aacacCACTTGGAATTGTATATGGAAACCAGTATTGCAACTCCACACTCT
TTGTAAGACAGCCTGGTTCTCACTTGTGAAGAGAGTGATTTCTTTGATGG
TGATACAGATAACCATAAGAGAGGTTGCCACTAAAAGAATGAAAAGATAC
ACAGCGAATTGTGTGACATATGTTCGAGTGATTTCTTTCTTCGTCAGTCG
GGTATCGGAAGAGAAAATCTGTATCATTTTCTGTGATTTGTTAACTACGN
TAAGAGAGGTTGCCACTAAAAGAATGAAAAGATACACAGCGAATTGTGTG
ACATATGTTCGAGTGATTTCTTTCTTCGTCAGTCGGGTATCGGAAGAGAA
AATCTGTatcattttttgtgatttgTTAACTACGAAGCTTAAATTTGACG
AGCACAAAATTGTGATTGAAACGAGTTTCCAGGTACAATCAACTCCACCT
GCCCATGTGTGTTCAGCAAGGGTTAACATTGGAATGATCACGAAAATAGC
GAGAAAATGCAGCAAGTGTAAACATGACATTGTGAAATCAGCTGAAGTTA
CCATCGGTGTCTCACGAAATCGAACAAAAACGATTAAAATGAAAAGGGTC
GTGACAAAACACAGACCAGACGTCAATAATAACAACAAAACCATCTTTCG
GTTGTCTTTGAGGAATATGTTTGTGTAAGGATCAATACATTGAGAACGCT
GAGCATTCGAAATCAATTTCGATGGACATGGAATGCACTCACTTGTGTCG
TTTGTTGGACTATGACTATTTTCTGGACATTGCTTGCAAGTCCAACCAAA
CCTAATAACGTGGTCGTTAGTTTCTCTTTTTCTTCCATGAGCAGGACCAA
ATCCACGATCACAAACTTGATAAGGGCATCTTGTTGAGCGTTTTAATTTG
AAAAGACTGTCTGGTACGTACACATACCTAACAAATTTAGcgtctttctt
tttcaattgcACGATGAAATCTCTTGTAAGAGATaaataaaaagatttat
ttATGGTTTCCAAATTGAATGTTATATTTGTATCAGTCTTATACAACCCG
AGTTCATAAACCTTGCAAGCTCCGAATACGACGAAGAATAGAAAGTCAAA
TTCTGCCAGGGAATTCAAACGAAAGTCGTTACGTTTGGAGAAAGATTGGT
CACAGTGCTCTTCATGATACCATTGATAGAAATATGAGAAATGATGGCGA
TGCATAAGTACATTGTCATAGATGTGAATATTTTCTGGTATTCTTAAAGC
CCTATCTTTGTTAAAGTAAATATCTTCGACATCATTCAAAAGCCATGTCG
TATTTCTGTCCTTCTCTGGTGAAAACAAATGCATTCTTAAGAGTTTGTAT
TGCTCTAATGGATGTCCAAACATGACCACGATCTGTGGAATAGAACCCTG
GTTTAACTGACGAAGAAATTCAGTATATTGTgtataatagacgatatcgg
ctttaccgaattctccccgaatgattacccatgatgcattgtgcaaaaaa
attcacggacgatattgatGACGATaccaatgcatcatgggtaatcattc
ggggagaattcggaaagccgatatcgtctattgattGGGATTATTGTGAA
AGTGACCGTGCACTGTTGAAGTTCTCtcattttttctaagaattcaTTCT
TCAGAGCTTCGTAGAAAGATCCTTTCTCCAGAAAGTATACAACAGTAACT
GAATGAACATTGCTTTTTGTGACCAAGTTATCCACCAACGAGTTTGGGCT
CGTAAACATCGAATAGCGATTGCCTGATAGTACCGTTTGATTGTATCTCA
AAATGATATCATCTTTATTGAAAGACTTTTTGTATTGGTTCAGGACCACA
AGGATTAAACTGTTAGATGTTGAAAATATCTCATCAGCTATTTTGGTCAT
GTCATCAGGCAGGTAAACAACAACATACAGAATGTTTTGTCTGTATTGCC
ATCTTTTCAAAGGATAATTATTCCATTTTGGTGTGGACTGTCTTGTATTG
TTCACAAAATATTCTTGACTCAACAAAATATCCATTGCGCTCGCCACAAA
GTCATCATACTCGCAAATTTCGTAAGGTACGAAAGTCAAGTTCATTTCCC
CATGATCGTATGGAAGGTTCAATCTGACCCATATGTTTGACCTCTGACGA
GAAAAATTAGAGGCGAATATAAAGCTAGCGCTTTGTAAAGAGATTTCAgc
tttaaaattgaattttgtacGATACTCTTTGGGTAGTTGAGAGCATGTTT
GAAAAATGCCAACAATTTTAAACGGATAACCAGCTAAGTTATATTTCTTC
ATTCGATCTATGATCTGAGTTTGAGCCATCACTGACAGAAAGACGACCGT
TAAGATAACCAAACCAACTCTAGACATCTTGTTTGTCGACAGCAGACTAA
ACTAAAGagataaaaagaaagaagaattatttttcgcaaatttttcaTAA
TCGAATTTGC Run BLAST on NCBI protein sequence of TCONS_00068197-protein >TCONS_00068197-protein ID=TCONS_00068197-protein|Name=TCONS_00068197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MFGHPLEQYKLLRMHLFSPEKDRNTTWLLNDVEDIYFNKDRALRIPENIH
IYDNVLMHRHHFSYFYQWYHEEHCDQSFSKRNDFRLNSLAEFDFLFFVVF
GACKVYELGLYKTDTNITFNLETINKSFYLSLTRDFIVQLKKKDAKFVRY
VYVPDSLFKLKRSTRCPYQVCDRGFGPAHGRKRETNDHVIRFGWTCKQCP
ENSHSPTNDTSECIPCPSKLISNAQRSQCIDPYTNIFLKDNRKMVLLLLL
TSGLCFVTTLFILIVFVRFRETPMVTSADFTMSCLHLLHFLAIFVIIPML
TLAEHTWAGGVDCTWKLVSITILCSSNLSFVVNKSQKMIQIFSSDTRLTK
KEITRTYVTQFAVYLFILLVATSLXVVNKSQKMIQIFSSDTRLTKKEITR
TYVTQFAVYLFILLVATSLMVICITIKEITLFTSENQAVLQRVWSCNTGF
HIQFQVVFMIFVQLFCFIQSFRARNVPSIYSNAWTILYASFGMSFGLAVY
FPATIYHRRKSLYQEESIAILLAIILNFTLLQVILFGRKVYNILFLARKN
NKNYYRHKMMLDIQEKVTEQCAGPSKQTTSM Run BLAST on NCBI transcript from alignment at scaffold_48:310478..313337 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068197 ID=TCONS_00068197|Name=TCONS_00068197|organism=Clytia hemisphaerica|type=transcript|length=2860bp|location=Sequence derived from alignment at scaffold_48:310478..313337 (Clytia hemisphaerica)
GCAAATTCGATTAtgaaaaatttgcgaaaaataattcttctttcttttta
tctCTTTAGTTTAGTCTGCTGTCGACAAACAAGATGTCTAGAGTTGGTTT
GGTTATCTTAACGGTCGTCTTTCTGTCAGTGATGGCTCAAACTCAGATCA
TAGATCGAATGAAGAAATATAACTTAGCTGGTTATCCGTTTAAAATTGTT
GGCATTTTTCAAACATGCTCTCAACTACCCAAAGAGTATCgtacaaaatt
caattttaaagcTGAAATCTCTTTACAAAGCGCTAGCTTTATATTCGCCT
CTAATTTTTCTCGTCAGAGGTCAAACATATGGGTCAGATTGAACCTTCCA
TACGATCATGGGGAAATGAACTTGACTTTCGTACCTTACGAAATTTGCGA
GTATGATGACTTTGTGGCGAGCGCAATGGATATTTTGTTGAGTCAAGAAT
ATTTTGTGAACAATACAAGACAGTCCACACCAAAATGGAATAATTATCCT
TTGAAAAGATGGCAATACAGACAAAACATTCTGTATGTTGTTGTTTACCT
GCCTGATGACATGACCAAAATAGCTGATGAGATATTTTCAACATCTAACA
GTTTAATCCTTGTGGTCCTGAACCAATACAAAAAGTCTTTCAATAAAGAT
GATATCATTTTGAGATACAATCAAACGGTACTATCAGGCAATCGCTATTC
GATGTTTACGAGCCCAAACTCGTTGGTGGATAACTTGGTCACAAAAAGCA
ATGTTCATTCAGTTACTGTTGTATACTTTCTGGAGAAAGGATCTTTCTAC
GAAGCTCTGAAGAAtgaattcttagaaaaaatgaGAGAACTTCAACAGTG
CACGGTCACTTTCACAATAATCCCaatcaatagacgatatcggctttccg
aattctccccgaatgattacccatgatgcattggtATCGTCatcaatatc
gtccgtgaatttttttgcacaatgcatcatgggtaatcattcggggagaa
ttcggtaaagccgatatcgtctattatacACAATATACTGAATTTCTTCG
TCAGTTAAACCAGGGTTCTATTCCACAGATCGTGGTCATGTTTGGACATC
CATTAGAGCAATACAAACTCTTAAGAATGCATTTGTTTTCACCAGAGAAG
GACAGAAATACGACATGGCTTTTGAATGATGTCGAAGATATTTACTTTAA
CAAAGATAGGGCTTTAAGAATACCAGAAAATATTCACATCTATGACAATG
TACTTATGCATCGCCATCATTTCTCATATTTCTATCAATGGTATCATGAA
GAGCACTGTGACCAATCTTTCTCCAAACGTAACGACTTTCGTTTGAATTC
CCTGGCAGAATTTGACTTTCTATTCTTCGTCGTATTCGGAGCTTGCAAGG
TTTATGAACTCGGGTTGTATAAGACTGATACAAATATAACATTCAATTTG
GAAACCATaaataaatctttttatttATCTCTTACAAGAGATTTCATCGT
gcaattgaaaaagaaagacgCTAAATTTGTTAGGTATGTGTACGTACCAG
ACAGTCTTTTCAAATTAAAACGCTCAACAAGATGCCCTTATCAAGTTTGT
GATCGTGGATTTGGTCCTGCTCATGGAAGAAAAAGAGAAACTAACGACCA
CGTTATTAGGTTTGGTTGGACTTGCAAGCAATGTCCAGAAAATAGTCATA
GTCCAACAAACGACACAAGTGAGTGCATTCCATGTCCATCGAAATTGATT
TCGAATGCTCAGCGTTCTCAATGTATTGATCCTTACACAAACATATTCCT
CAAAGACAACCGAAAGATGGTTTTGTTGTTATTATTGACGTCTGGTCTGT
GTTTTGTCACGACCCTTTTCATTTTAATCGTTTTTGTTCGATTTCGTGAG
ACACCGATGGTAACTTCAGCTGATTTCACAATGTCATGTTTACACTTGCT
GCATTTTCTCGCTATTTTCGTGATCATTCCAATGTTAACCCTTGCTGAAC
ACACATGGGCAGGTGGAGTTGATTGTACCTGGAAACTCGTTTCAATCACA
ATTTTGTGCTCGTCAAATTTAAGCTTCGTAGTTAAcaaatcacaaaaaat
gatACAGATTTTCTCTTCCGATACCCGACTGACGAAGAAAGAAATCACTC
GAACATATGTCACACAATTCGCTGTGTATCTTTTCATTCTTTTAGTGGCA
ACCTCTCTTANCGTAGTTAACAAATCACAGAAAATGATACAGATTTTCTC
TTCCGATACCCGACTGACGAAGAAAGAAATCACTCGAACATATGTCACAC
AATTCGCTGTGTATCTTTTCATTCTTTTAGTGGCAACCTCTCTTATGGTT
ATCTGTATCACCATCAAAGAAATCACTCTCTTCACAAGTGAGAACCAGGC
TGTCTTACAAAGAGTGTGGAGTTGCAATACTGGTTTCCATATACAATTCC
AAGTGgtgtttatgatttttgttcAGTTGTTTTGCTTCATACAATCATTT
CGTGCGAGAAATGTTCCATCGATTTACAGTAATGCTTGGACCATTCTATA
CGCTAGTTTTGGCATGTCCTTCGGCTTGGCTGTTTATTTTCCTGCAACCA
TCTATCACAGGAGGAAAAGTCTATATCAGGAAGAGAGTATCGCTATTTTA
CTGGCCATCATCCTCAATTTCACACTGCTCCAAGTGATTTTGTTTGGAAG
GAAGGTTTACAATATTCTGTTCTTGGCAaggaaaaacaataaaaattact
ATAGACACAAAATGATGCTTGATATCCAAGAAAAAGTCACAGAACAATGT
GCTGGACCGTCAAAACAAACAACAAGTATGTGATAtgggttttcaaaaaa
acaactttGG Coding sequence (CDS) from alignment at scaffold_48:310478..313337 >TCONS_00068197 ID=TCONS_00068197|Name=TCONS_00068197|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_48:310478..313337 (Clytia hemisphaerica)
ATGTTTGGACATCCATTAGAGCAATACAAACTCTTAAGAATGCATTTGTT
TTCACCAGAGAAGGACAGAAATACGACATGGCTTTTGAATGATGTCGAAG
ATATTTACTTTAACAAAGATAGGGCTTTAAGAATACCAGAAAATATTCAC
ATCTATGACAATGTACTTATGCATCGCCATCATTTCTCATATTTCTATCA
ATGGTATCATGAAGAGCACTGTGACCAATCTTTCTCCAAACGTAACGACT
TTCGTTTGAATTCCCTGGCAGAATTTGACTTTCTATTCTTCGTCGTATTC
GGAGCTTGCAAGGTTTATGAACTCGGGTTGTATAAGACTGATACAAATAT
AACATTCAATTTGGAAACCATaaataaatctttttatttATCTCTTACAA
GAGATTTCATCGTgcaattgaaaaagaaagacgCTAAATTTGTTAGGTAT
GTGTACGTACCAGACAGTCTTTTCAAATTAAAACGCTCAACAAGATGCCC
TTATCAAGTTTGTGATCGTGGATTTGGTCCTGCTCATGGAAGAAAAAGAG
AAACTAACGACCACGTTATTAGGTTTGGTTGGACTTGCAAGCAATGTCCA
GAAAATAGTCATAGTCCAACAAACGACACAAGTGAGTGCATTCCATGTCC
ATCGAAATTGATTTCGAATGCTCAGCGTTCTCAATGTATTGATCCTTACA
CAAACATATTCCTCAAAGACAACCGAAAGATGGTTTTGTTGTTATTATTG
ACGTCTGGTCTGTGTTTTGTCACGACCCTTTTCATTTTAATCGTTTTTGT
TCGATTTCGTGAGACACCGATGGTAACTTCAGCTGATTTCACAATGTCAT
GTTTACACTTGCTGCATTTTCTCGCTATTTTCGTGATCATTCCAATGTTA
ACCCTTGCTGAACACACATGGGCAGGTGGAGTTGATTGTACCTGGAAACT
CGTTTCAATCACAATTTTGTGCTCGTCAAATTTAAGCTTCGTAGTTAAca
aatcacaaaaaatgatACAGATTTTCTCTTCCGATACCCGACTGACGAAG
AAAGAAATCACTCGAACATATGTCACACAATTCGCTGTGTATCTTTTCAT
TCTTTTAGTGGCAACCTCTCTTANCGTAGTTAACAAATCACAGAAAATGA
TACAGATTTTCTCTTCCGATACCCGACTGACGAAGAAAGAAATCACTCGA
ACATATGTCACACAATTCGCTGTGTATCTTTTCATTCTTTTAGTGGCAAC
CTCTCTTATGGTTATCTGTATCACCATCAAAGAAATCACTCTCTTCACAA
GTGAGAACCAGGCTGTCTTACAAAGAGTGTGGAGTTGCAATACTGGTTTC
CATATACAATTCCAAGTGgtgtttatgatttttgttcAGTTGTTTTGCTT
CATACAATCATTTCGTGCGAGAAATGTTCCATCGATTTACAGTAATGCTT
GGACCATTCTATACGCTAGTTTTGGCATGTCCTTCGGCTTGGCTGTTTAT
TTTCCTGCAACCATCTATCACAGGAGGAAAAGTCTATATCAGGAAGAGAG
TATCGCTATTTTACTGGCCATCATCCTCAATTTCACACTGCTCCAAGTGA
TTTTGTTTGGAAGGAAGGTTTACAATATTCTGTTCTTGGCAaggaaaaac
aataaaaattactATAGACACAAAATGATGCTTGATATCCAAGAAAAAGT
CACAGAACAATGTGCTGGACCGTCAAAACAAACAACAAGTATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068197-exon-scaffold_48-1491911889:310478..313337 | TCONS_00068197-exon-scaffold_48-1491911889:310478..313337 | Clytia hemisphaerica | exon |
| TCONS_00068197-exon-scaffold_48-1510915933:310478..313337 | TCONS_00068197-exon-scaffold_48-1510915933:310478..313337 | Clytia hemisphaerica | exon |
| TCONS_00068197-exon-scaffold_48-1575043694:310478..313337 | TCONS_00068197-exon-scaffold_48-1575043694:310478..313337 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:310478..313337 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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