TCONS_00068194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068194
Unique NameTCONS_00068194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068194 ID=TCONS_00068194|Name=TCONS_00068194|organism=Clytia hemisphaerica|type=transcript|length=479bp
TGCTATCTGTCCCTTCAAAATACACATCAAGTTGTTATTCTCAAAAATGG
ACAACACAGAAATGTAAAAGGTTATCTTGGCAAAAGAAGAGGGCCTACAA
GCCAGCCAAATAAACATCAAAACCTGCAAAATGGGATCGCTTTANGGACA
ACACAGAAATGTAAAAGGTTATCTTGGCAAAAGAAGAGGGCCTACAAGCC
AGCCAAATAAACATCAAAACCTGCAGAATGGGATCGCTTTAAAAAGCTAA
TAAATGAATTCAGGAAAGCTTGCAAATCAGCATTCAATAACTTTGTCAAA
AACTTGTGTTAGCCCAGATGGGGTAAATAGTCTCAAGTTACTGTTACGAT
TCATAAAATCCCGTAGATGTGAAGATCCCATCCCTGCAAGACAACAATAT
CTTGCATATTGATAACACCAAGAAAGCAAACAACCTGAATAAGCAGTTTT
CTAATGTCTTCTCCATTCCTGACGGTCCA
Run BLAST on NCBI

transcript from alignment at scaffold_48:286043..286521

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068194 ID=TCONS_00068194|Name=TCONS_00068194|organism=Clytia hemisphaerica|type=transcript|length=479bp|location=Sequence derived from alignment at scaffold_48:286043..286521 (Clytia hemisphaerica)
TGGACCGTCAGGAATGGAGAAGACATTAGAAAACTGCTTATTCAGGTTGT
TTGCTTTCTTGGTGTTATCAATATGCAAGATATTGTTGTCTTGCAGGGAT
GGGATCTTCACATCTACGGGATTTTATGAATCGTAACAGTAACTTGAGAC
TATTTACCCCATCTGGGCTAACACAAGTTTTTGACAAAGTTATTGAATGC
TGATTTGCAAGCTTTCCTGAATTCATTTATTAGCTTTTTAAAGCGATCCC
ATTCTGCAGGTTTTGATGTTTATTTGGCTGGCTTGTAGGCCCTCTTCTTT
TGCCAAGATAACCTTTTACATTTCTGTGTTGTCCNTAAAGCGATCCCATT
TTGCAGGTTTTGATGTTTATTTGGCTGGCTTGTAGGCCCTCTTCTTTTGC
CAAGATAACCTTTTACATTTCTGTGTTGTCCATTTTTGAGAATAACAACT
TGATGTGTATTTTGAAGGGACAGATAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042570XLOC_042570Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068194-exon-scaffold_48-1491911889:286043..286521TCONS_00068194-exon-scaffold_48-1491911889:286043..286521Clytia hemisphaericaexon
TCONS_00068194-exon-scaffold_48-1510915933:286043..286521TCONS_00068194-exon-scaffold_48-1510915933:286043..286521Clytia hemisphaericaexon
TCONS_00068194-exon-scaffold_48-1575043694:286043..286521TCONS_00068194-exon-scaffold_48-1575043694:286043..286521Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:286043..286521 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.18259	1.02508	1.33899	1.02864	0	0	0	0	0	0	0	0	0	0	0	0.240213	0	0	0	0	0	0	0.15066	0.136971	0.423232	0.377724	0.180174	0	0	0.148591
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top