|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068191 ID=TCONS_00068191|Name=TCONS_00068191|organism=Clytia hemisphaerica|type=transcript|length=1259bp
GAAATGTTGGTTAAATTGTTCATCGCGCAGTGGTATTTGATCAGCAGGAT
TTCTTGTATCCTACTCACATACCAAGTGTTCAAAGAGAATGTGTCGGTGA
AAGACTTGGTGCCGTTTCacgaagaaaaaatcttttctccCTTGAAATGT
TATACCGTCTGTCAACGGACGCCGGACAAATGTTGTTTTGTGGAGGTGGA
CCAAGAAGCAGTGCAACCAGACAACAGTTATTTCTGCCGCTTGTTTGAGT
TCACTGGGGATATACATAGCCATTTATCTCCGTCTGTTGGACGTTCTATA
TCTGCTTCCATCGCTAATCAGCGTGAATGTTTAGATTGGTATAACCAAGG
GTTTCGATCCGATGGAGTGTATTACATCATGTTTCAAGGCCATCGAATGA
AGGTTTATTGCGACATGACCACGTCGCCTGGCGGTTGGACGTTGCTCCAA
CACCGGTATGACGGATCCGTCAGTTTCAAGCGCAACGATACTACTTATAA
AGATGGATTCGGTTCTCCATACACGGAATATTGGTTGGGCACTCGATTTC
TTTACCGTTTCTTGAGTGATGTTCAGACGGTCACTGTGCGTCTTGAAGCC
ACCGCAGCGAACGGTGATCAAAATTATATTGTGTACGATGGCTTAAAAAT
TGGAAACGAATCTGAAAATTACATCATCAAATCTACGGGTGCATTCGTTG
AAGGCTTCTATCGAACGGACTGGGACGTACGCAACAACGCACAATTTACT
ATCCATCTCGATGCAAATGGTGACTTATCGACAGGCTGGTGGTATAATTT
GTCACCATTCCCCATGAATTTGAACGGTTTTTATACTTCAATTGACGGTA
CATCCTCTGCTATGGACGCCTTTCGATGGCACTCATGGAAAAATACTGAA
CTTTTGAAAGGCTCCAAGATCATGCTGAGACGAAAAACGTAATTTGAAAA
GATGGACATTTTGGTCTCTAATTAAAGACTACGTGTTTTATCTCTATTTC
TTTTCGGCTTTATTGGAATGGCCGTTCAGGCCTCCGAAGGAATTCAGGAA
AATTTCGATCAATTTAAGTTGGATTCTCCGGAAGTTTTTCCATCGATTTC
GTTTGTATTTTCATTAGCAAAACAAATTATAATTCGATGGGTAAATATTT
AATCCAAGGACCCGCTTCAATCattgctttaaaaattttattttcaattt
taaaatcttctCTGCTGGTAGTCTTATGTTTACTGTATTTTTTTCTgtaa
taattttta Run BLAST on NCBI protein sequence of TCONS_00068191-protein >TCONS_00068191-protein ID=TCONS_00068191-protein|Name=TCONS_00068191-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
EMLVKLFIAQWYLISRISCILLTYQVFKENVSVKDLVPFHEEKIFSPLKC
YTVCQRTPDKCCFVEVDQEAVQPDNSYFCRLFEFTGDIHSHLSPSVGRSI
SASIANQRECLDWYNQGFRSDGVYYIMFQGHRMKVYCDMTTSPGGWTLLQ
HRYDGSVSFKRNDTTYKDGFGSPYTEYWLGTRFLYRFLSDVQTVTVRLEA
TAANGDQNYIVYDGLKIGNESENYIIKSTGAFVEGFYRTDWDVRNNAQFT
IHLDANGDLSTGWWYNLSPFPMNLNGFYTSIDGTSSAMDAFRWHSWKNTE
LLKGSKIMLRRKT Run BLAST on NCBI transcript from alignment at scaffold_48:240130..241388 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068191 ID=TCONS_00068191|Name=TCONS_00068191|organism=Clytia hemisphaerica|type=transcript|length=1259bp|location=Sequence derived from alignment at scaffold_48:240130..241388 (Clytia hemisphaerica)
taaaaattattacAGAAAAAAATACAGTAAACATAAGACTACCAGCAGag
aagattttaaaattgaaaataaaatttttaaagcaatGATTGAAGCGGGT
CCTTGGATTAAATATTTACCCATCGAATTATAATTTGTTTTGCTAATGAA
AATACAAACGAAATCGATGGAAAAACTTCCGGAGAATCCAACTTAAATTG
ATCGAAATTTTCCTGAATTCCTTCGGAGGCCTGAACGGCCATTCCAATAA
AGCCGAAAAGAAATAGAGATAAAACACGTAGTCTTTAATTAGAGACCAAA
ATGTCCATCTTTTCAAATTACGTTTTTCGTCTCAGCATGATCTTGGAGCC
TTTCAAAAGTTCAGTATTTTTCCATGAGTGCCATCGAAAGGCGTCCATAG
CAGAGGATGTACCGTCAATTGAAGTATAAAAACCGTTCAAATTCATGGGG
AATGGTGACAAATTATACCACCAGCCTGTCGATAAGTCACCATTTGCATC
GAGATGGATAGTAAATTGTGCGTTGTTGCGTACGTCCCAGTCCGTTCGAT
AGAAGCCTTCAACGAATGCACCCGTAGATTTGATGATGTAATTTTCAGAT
TCGTTTCCAATTTTTAAGCCATCGTACACAATATAATTTTGATCACCGTT
CGCTGCGGTGGCTTCAAGACGCACAGTGACCGTCTGAACATCACTCAAGA
AACGGTAAAGAAATCGAGTGCCCAACCAATATTCCGTGTATGGAGAACCG
AATCCATCTTTATAAGTAGTATCGTTGCGCTTGAAACTGACGGATCCGTC
ATACCGGTGTTGGAGCAACGTCCAACCGCCAGGCGACGTGGTCATGTCGC
AATAAACCTTCATTCGATGGCCTTGAAACATGATGTAATACACTCCATCG
GATCGAAACCCTTGGTTATACCAATCTAAACATTCACGCTGATTAGCGAT
GGAAGCAGATATAGAACGTCCAACAGACGGAGATAAATGGCTATGTATAT
CCCCAGTGAACTCAAACAAGCGGCAGAAATAACTGTTGTCTGGTTGCACT
GCTTCTTGGTCCACCTCCACAAAACAACATTTGTCCGGCGTCCGTTGACA
GACGGTATAACATTTCAAGggagaaaagattttttcttcgtGAAACGGCA
CCAAGTCTTTCACCGACACATTCTCTTTGAACACTTGGTATGTGAGTAGG
ATACAAGAAATCCTGCTGATCAAATACCACTGCGCGATGAACAATTTAAC
CAACATTTC Coding sequence (CDS) from alignment at scaffold_48:240130..241388 >TCONS_00068191 ID=TCONS_00068191|Name=TCONS_00068191|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_48:240130..241388 (Clytia hemisphaerica)
TTACGTTTTTCGTCTCAGCATGATCTTGGAGCCTTTCAAAAGTTCAGTAT
TTTTCCATGAGTGCCATCGAAAGGCGTCCATAGCAGAGGATGTACCGTCA
ATTGAAGTATAAAAACCGTTCAAATTCATGGGGAATGGTGACAAATTATA
CCACCAGCCTGTCGATAAGTCACCATTTGCATCGAGATGGATAGTAAATT
GTGCGTTGTTGCGTACGTCCCAGTCCGTTCGATAGAAGCCTTCAACGAAT
GCACCCGTAGATTTGATGATGTAATTTTCAGATTCGTTTCCAATTTTTAA
GCCATCGTACACAATATAATTTTGATCACCGTTCGCTGCGGTGGCTTCAA
GACGCACAGTGACCGTCTGAACATCACTCAAGAAACGGTAAAGAAATCGA
GTGCCCAACCAATATTCCGTGTATGGAGAACCGAATCCATCTTTATAAGT
AGTATCGTTGCGCTTGAAACTGACGGATCCGTCATACCGGTGTTGGAGCA
ACGTCCAACCGCCAGGCGACGTGGTCATGTCGCAATAAACCTTCATTCGA
TGGCCTTGAAACATGATGTAATACACTCCATCGGATCGAAACCCTTGGTT
ATACCAATCTAAACATTCACGCTGATTAGCGATGGAAGCAGATATAGAAC
GTCCAACAGACGGAGATAAATGGCTATGTATATCCCCAGTGAACTCAAAC
AAGCGGCAGAAATAACTGTTGTCTGGTTGCACTGCTTCTTGGTCCACCTC
CACAAAACAACATTTGTCCGGCGTCCGTTGACAGACGGTATAACATTTCA
AGggagaaaagattttttcttcgtGAAACGGCACCAAGTCTTTCACCGAC
ACATTCTCTTTGAACACTTGGTATGTGAGTAGGATACAAGAAATCCTGCT
GATCAAATACCACTGCGCGATGAACAATTTAACCAACATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068191-exon-scaffold_48-1491911889:240130..241388 | TCONS_00068191-exon-scaffold_48-1491911889:240130..241388 | Clytia hemisphaerica | exon |
| TCONS_00068191-exon-scaffold_48-1510915933:240130..241388 | TCONS_00068191-exon-scaffold_48-1510915933:240130..241388 | Clytia hemisphaerica | exon |
| TCONS_00068191-exon-scaffold_48-1575043694:240130..241388 | TCONS_00068191-exon-scaffold_48-1575043694:240130..241388 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:240130..241388 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00068191 vs. Swiss-Prot (Human)
Match: ANGP1 (Angiopoietin-1 OS=Homo sapiens GN=ANGPT1 PE=1 SV=2) HSP 1 Score: 120.168 bits (300), Expect = 9.965e-30 Identity = 73/215 (33.95%), Postives = 112/215 (52.09%), Query Frame = 1
Query: 322 RECLDWYNQGFRSDGVY--YIMFQGHRMKVYCDMTTSPGGWTLLQHRYDGSVSFKRNDTTYKDGFGSPYTEYWLGTRFLYRFLSDVQTVTVRLEATAANGDQNYIVYDGLKIGNESENYIIKSTGAFVEGFYRTDWDVRNNAQFTIHLDANGD---------LSTGWWYNLSPFPMNLNGFYTSIDGTSSAMDAFRWHSWKNTEL-LKGSKIMLR 930
R+C D Y GF G+Y YI KV+C+M + GGWT++QHR DGS+ F+R YK GFG+P EYWLG F++ S Q + +R+E G++ Y YD IGNE +NY + G ++ + + A F+ DA+ D L+ GWW++ + P NLNG + + ++ +WH +K L+ + +M+R
Sbjct: 284 RDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDVNGGGWTVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYM-LRIELMDWEGNRAYSQYDRFHIGNEKQNYRLYLKGHTGTAGKQSSL-ILHGADFSTK-DADNDNCMCKCALMLTGGWWFD-ACGPSNLNGMFYTAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIR 494
The following BLAST results are available for this feature:
|
