TCONS_00068190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068190
Unique NameTCONS_00068190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068190 ID=TCONS_00068190|Name=TCONS_00068190|organism=Clytia hemisphaerica|type=transcript|length=205bp
ATCTTAGTGAGTGTGTGTTGTTTGTTTCTCTTTGACTCAATATGGTTGCT
CATTTTTGTCAACTTTGGAAAATGACTTTCGATTCGTGAACAACCAGCCA
GTGAAGATTTGATGATGATATCACTTTTCATTGATTAGGTGTGACAAGAA
GGAAAATGGCTATTTAGTAATCATTGAAATCAATTTCGAAAGCAGAACTT
AACTT
Run BLAST on NCBI

transcript from alignment at scaffold_48:233479..233683

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068190 ID=TCONS_00068190|Name=TCONS_00068190|organism=Clytia hemisphaerica|type=transcript|length=205bp|location=Sequence derived from alignment at scaffold_48:233479..233683 (Clytia hemisphaerica)
AAGTTAAGTTCTGCTTTCGAAATTGATTTCAATGATTACTAAATAGCCAT
TTTCCTTCTTGTCACACCTAATCAATGAAAAGTGATATCATCATCAAATC
TTCACTGGCTGGTTGTTCACGAATCGAAAGTCATTTTCCAAAGTTGACAA
AAATGAGCAACCATATTGAGTCAAAGAGAAACAAACAACACACACTCACT
AAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042566XLOC_042566Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068190-exon-scaffold_48-1491911889:233479..233683TCONS_00068190-exon-scaffold_48-1491911889:233479..233683Clytia hemisphaericaexon
TCONS_00068190-exon-scaffold_48-1510915933:233479..233683TCONS_00068190-exon-scaffold_48-1510915933:233479..233683Clytia hemisphaericaexon
TCONS_00068190-exon-scaffold_48-1575043694:233479..233683TCONS_00068190-exon-scaffold_48-1575043694:233479..233683Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:233479..233683 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.55098	3.02491	3.51221	0	56.4729	34.7088	57.827	61.6041	1.30698	4.85673	1.57135	15.4942	4.12604	11.7836	7.9263	8.50613	4.65727	8.35372	9.89238	18.978	5.99832	15.3603	0	3.23352	18.3174	46.0713	8.50682	4.53936	8.60735	8.76953
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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