TCONS_00068189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068189
Unique NameTCONS_00068189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068189 ID=TCONS_00068189|Name=TCONS_00068189|organism=Clytia hemisphaerica|type=transcript|length=655bp
CAGACATCTAAAGAGTCGTGCTGGCATAGATATTCCACTCACTATTCTAG
CCAGTGTTCTTATTATTATTAGAAGAAGACATGTCAAAACTGTTCTATTG
TTGATATATGTTATCTGGTGAATTTGGGAAGGGGATAAAACACACCGAAC
GACTACACCTCAGTTGACCTTTCTGACCCATTATTCGAAAAGCCCCCTtt
tcaaaatcgatttttgtttttaaaagcaAGCGTAAATAAACCCTAAGCGT
GAAATTTTCATTCCATGTCGCTTAAAACCTTAATAAATTACCTTAGTTCA
CAAGAAATTTCTTCTCAAAATATAAGCGTCCAATTTTCTCTATAGTGAAT
CCGTTAACATTCACAAATTTGAGGAAGTTTTTATCTTCACCTTCATGCAG
TTctcagaattttgaaattgtttgcTTGAGGTTTGTTTGATTTTCTGAGC
GGGCTTGCATCAAATTCAAATCATAATCAAAAGCGAAAGCTGACAAAATT
CCAAATGTAGTTTAATTGCCAACTTGCTGTGAGTTTTAGCCTTCGCATCG
ACCACTTCTGCCAAATAGCCCAGCCCTAAATACATTTCTTTAGATTTCAT
AATTGGAATTCAGTAGCGTTCTCAGGGGTGTCgaaaaatttgtgtaggag
agcac
Run BLAST on NCBI

transcript from alignment at scaffold_48:184768..185422

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068189 ID=TCONS_00068189|Name=TCONS_00068189|organism=Clytia hemisphaerica|type=transcript|length=655bp|location=Sequence derived from alignment at scaffold_48:184768..185422 (Clytia hemisphaerica)
gtgctctcctacacaaatttttcGACACCCCTGAGAACGCTACTGAATTC
CAATTATGAAATCTAAAGAAATGTATTTAGGGCTGGGCTATTTGGCAGAA
GTGGTCGATGCGAAGGCTAAAACTCACAGCAAGTTGGCAATTAAACTACA
TTTGGAATTTTGTCAGCTTTCGCTTTTGATTATGATTTGAATTTGATGCA
AGCCCGCTCAGAAAATCAAACAAACCTCAAgcaaacaatttcaaaattct
gagAACTGCATGAAGGTGAAGATAAAAACTTCCTCAAATTTGTGAATGTT
AACGGATTCACTATAGAGAAAATTGGACGCTTATATTTTGAGAAGAAATT
TCTTGTGAACTAAGGTAATTTATTAAGGTTTTAAGCGACATGGAATGAAA
ATTTCACGCTTAGGGTTTATTTACGCTtgcttttaaaaacaaaaatcgat
tttgaaaAGGGGGCTTTTCGAATAATGGGTCAGAAAGGTCAACTGAGGTG
TAGTCGTTCGGTGTGTTTTATCCCCTTCCCAAATTCACCAGATAACATAT
ATCAACAATAGAACAGTTTTGACATGTCTTCTTCTAATAATAATAAGAAC
ACTGGCTAGAATAGTGAGTGGAATATCTATGCCAGCACGACTCTTTAGAT
GTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042565XLOC_042565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068189-exon-scaffold_48-1491911889:184768..185422TCONS_00068189-exon-scaffold_48-1491911889:184768..185422Clytia hemisphaericaexon
TCONS_00068189-exon-scaffold_48-1510915933:184768..185422TCONS_00068189-exon-scaffold_48-1510915933:184768..185422Clytia hemisphaericaexon
TCONS_00068189-exon-scaffold_48-1575043694:184768..185422TCONS_00068189-exon-scaffold_48-1575043694:184768..185422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:184768..185422 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.0549412	0	0	0	0.122412	0	0	1.07674	0.675253	0.182413	0.4146	0.427028	0	0	0	0.0882904	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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