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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068186 ID=TCONS_00068186|Name=TCONS_00068186|organism=Clytia hemisphaerica|type=transcript|length=2272bp
ATTTGATTGGAAAAGTCAACTTTGGCTCTTTAATTTTAAGGTCATGAAAG
TTTATATATTTCGCTGggagaaattttaataaaatagtAACTTTTGTCCA
TTTCTTGTTGCGAAAGTGATCAAAAAGCGCAAACTGAACAAAaaagctgt
ttctggctgaaaaacactgtttttaagggttaatatctcgggTTAGgaac
agaaatcacctatacttgcaatatatctctaatcctaattttttgagagc
tttccaaaaaaataaaacaggtctccgttatctcaagctaaaattttcat
taatttttgaccctataatttttacctgagaccgtcatatttgtccgacc
ACACctaagtgtccgaaaaaaaatggaacctaagtaattttgattcccct
accccttagctttccaaacgtgtataacaagtgctttgaccaaaacaatt
gagcgattttacaaaatgccctctactatatcTAACAAACTTAAATatta
aatacaatacaataaCCCGAAAAAGACATATATCATCAATGTTAAATACT
CTAAGGGGGCCTTTAAGGAGGTGcagttattttctttttcctgaCACTGT
TTACTGACTGTCTGTCATAGTGATAGGAGGGTCGTACCACGTAGTTCTCG
TTATCATTGTTCTCTACTACAATGGGTTTTTCAATTATGTGTCTAGCCgt
gctttgttttgaattttcgcTACTCAAAGTATTGACAATATATGCTGAGG
CTATGGGCTGGATGACTTCTGTTCCAGTACTCCTGCCAAGTGAATTATTC
TTTGTAGGAATTCGCATTTTAGAGGTGTCGAGTCTTCCCTTCTCCTTGGC
ATTTCTGATAAACTTCTTGACGTAATAAGTGGAGGGGGCCATTTCATCCA
CAACGATTCCTTTCGTGAGGTCTCTATCCACTTTAGTAACATGAGAATCG
GAAACTCTCGATAAGGTAAACTCATTTTCAGAGCTCGTGGATACCTTTTT
TCTTTGTAACGTATCATCGTTGGTTTTATTCAAATGGAGTATAGACGGAA
TTTTTTGGTCGCTCAATGAGCTATTAGCATAATCTGGCCTGTCAATTGAT
TTTGGTCGCACTAATCTTAGACTTCCAGGAACTTTCTTCCCTTTTGTGTT
AGTGACAAATTTTCGAACATAGTAAGCGGAAGCGAGGCTGGTAATCTCAT
TCTCATTgttactttttttcatttcttcaccCTTCTTTCCTATTTCATCC
GAACTTGTAGGTCCTAAGCCACAATGAATGTCCTGTTCATTGTCCTGATG
TAtaggaacatttttcaaagctttcttttttgcatttttgatgaatttgt
TGACATAATACACAGAAGAGGCTGAGTCTTTCATCGACGCAGTTTTGGAA
GTTGGCGATGGTTCTTCGCGGGTTATATCTCGTTTTGTTTGCACTCGTCT
CAAACTGGAGGGCACTTTCTCCCCTTTTGCATTGGTGATGAACTTTCTGA
CGAAATAAATGGAAGGGAGACTTAAAGACTGTTTATCACTTGGTGCTGGG
TCTTCTCTGTTGTTTTCGATTCCTTTTGTTGTCTTGGAAGCTTCACCATC
AGTAGCAACACATTCAGAGATCGATACAACATTTGACTCGTGCTGTTTGG
TTGCTTCAATTTTCTTCTTggtgtttttaatgaatttcctCGCGTAGTAT
ATTGTTGATGGTCCAACTTTTACAGGTGCAACTTTTACAGGCGCAACAGG
ACTGCCTTCTTGCTTGGACTGTACGCGTTTTAAACTCGCAGGAACTTTCT
TTCCCCTTGCATTATTGATGAATTTCTTCACGTAATAAGTGGAAATAGCT
GTCGGATCTAAAGCATCTGCACCACTATCCAGTCTCTTGATTGTACTTCT
ATTGAGTTTGCTCGCAGCCGAAGGTGAATCTTTATTTTCCGAAGAGGGGT
CAAATTTAGACGAAGAAGATTGTTCATTCCGTTTCTTAGCAGCTTCTATG
GAATCTTTCCTTGCACTATCAATGAATTTCATGACGTAATAATCAGGATT
ATGAAGGGCTGCCATGTTGGAAGCCAGCCTCATAGTGGTGGACGGTTCTC
GTGCTGACCgttttttactcaatttttggTTTGCTTTATATTGATGTTTA
GCCGCAGCATATCGAGTTGCTAGAACGTTGAGTGCCGCCATCTTCTAATC
ACCAAGAATACCTCTCTACTGATGTTTTAAGATACGCTGAATTTTATACT
GGCTAAAATCATAAGATCTTTG Run BLAST on NCBI protein sequence of TCONS_00068186-protein >TCONS_00068186-protein ID=TCONS_00068186-protein|Name=TCONS_00068186-protein|organism=Clytia hemisphaerica|type=polypeptide|length=542bp
MAALNVLATRYAAAKHQYKANQKLSKKRSAREPSTTMRLASNMAALHNPD
YYVMKFIDSARKDSIEAAKKRNEQSSSSKFDPSSENKDSPSAASKLNRST
IKRLDSGADALDPTAISTYYVKKFINNARGKKVPASLKRVQSKQEGSPVA
PVKVAPVKVGPSTIYYARKFIKNTKKKIEATKQHESNVVSISECVATDGE
ASKTTKGIENNREDPAPSDKQSLSLPSIYFVRKFITNAKGEKVPSSLRRV
QTKRDITREEPSPTSKTASMKDSASSVYYVNKFIKNAKKKALKNVPIHQD
NEQDIHCGLGPTSSDEIGKKGEEMKKSNNENEITSLASAYYVRKFVTNTK
GKKVPGSLRLVRPKSIDRPDYANSSLSDQKIPSILHLNKTNDDTLQRKKV
STSSENEFTLSRVSDSHVTKVDRDLTKGIVVDEMAPSTYYVKKFIRNAKE
KGRLDTSKMRIPTKNNSLGRSTGTEVIQPIASAYIVNTLSSENSKQSTAR
HIIEKPIVVENNDNENYVVRPSYHYDRQSVNSVRKKKITAPP Run BLAST on NCBI transcript from alignment at scaffold_48:109600..111871 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068186 ID=TCONS_00068186|Name=TCONS_00068186|organism=Clytia hemisphaerica|type=transcript|length=2272bp|location=Sequence derived from alignment at scaffold_48:109600..111871 (Clytia hemisphaerica)
CAAAGATCTTATGATTTTAGCCAGTATAAAATTCAGCGTATCTTAAAACA
TCAGTAGAGAGGTATTCTTGGTGATTAGAAGATGGCGGCACTCAACGTTC
TAGCAACTCGATATGCTGCGGCTAAACATCAATATAAAGCAAAccaaaaa
ttgagtaaaaaacGGTCAGCACGAGAACCGTCCACCACTATGAGGCTGGC
TTCCAACATGGCAGCCCTTCATAATCCTGATTATTACGTCATGAAATTCA
TTGATAGTGCAAGGAAAGATTCCATAGAAGCTGCTAAGAAACGGAATGAA
CAATCTTCTTCGTCTAAATTTGACCCCTCTTCGGAAAATAAAGATTCACC
TTCGGCTGCGAGCAAACTCAATAGAAGTACAATCAAGAGACTGGATAGTG
GTGCAGATGCTTTAGATCCGACAGCTATTTCCACTTATTACGTGAAGAAA
TTCATCAATAATGCAAGGGGAAAGAAAGTTCCTGCGAGTTTAAAACGCGT
ACAGTCCAAGCAAGAAGGCAGTCCTGTTGCGCCTGTAAAAGTTGCACCTG
TAAAAGTTGGACCATCAACAATATACTACGCGaggaaattcattaaaaac
accAAGAAGAAAATTGAAGCAACCAAACAGCACGAGTCAAATGTTGTATC
GATCTCTGAATGTGTTGCTACTGATGGTGAAGCTTCCAAGACAACAAAAG
GAATCGAAAACAACAGAGAAGACCCAGCACCAAGTGATAAACAGTCTTTA
AGTCTCCCTTCCATTTATTTCGTCAGAAAGTTCATCACCAATGCAAAAGG
GGAGAAAGTGCCCTCCAGTTTGAGACGAGTGCAAACAAAACGAGATATAA
CCCGCGAAGAACCATCGCCAACTTCCAAAACTGCGTCGATGAAAGACTCA
GCCTCTTCTGTGTATTATGTCAacaaattcatcaaaaatgcaaaaaagaa
agctttgaaaaatgttcctaTACATCAGGACAATGAACAGGACATTCATT
GTGGCTTAGGACCTACAAGTTCGGATGAAATAGGAAAGAAGggtgaagaa
atgaaaaaaagtaacAATGAGAATGAGATTACCAGCCTCGCTTCCGCTTA
CTATGTTCGAAAATTTGTCACTAACACAAAAGGGAAGAAAGTTCCTGGAA
GTCTAAGATTAGTGCGACCAAAATCAATTGACAGGCCAGATTATGCTAAT
AGCTCATTGAGCGACCAAAAAATTCCGTCTATACTCCATTTGAATAAAAC
CAACGATGATACGTTACAAAGAAAAAAGGTATCCACGAGCTCTGAAAATG
AGTTTACCTTATCGAGAGTTTCCGATTCTCATGTTACTAAAGTGGATAGA
GACCTCACGAAAGGAATCGTTGTGGATGAAATGGCCCCCTCCACTTATTA
CGTCAAGAAGTTTATCAGAAATGCCAAGGAGAAGGGAAGACTCGACACCT
CTAAAATGCGAATTCCTACAAAGAATAATTCACTTGGCAGGAGTACTGGA
ACAGAAGTCATCCAGCCCATAGCCTCAGCATATATTGTCAATACTTTGAG
TAgcgaaaattcaaaacaaagcacGGCTAGACACATAATTGAAAAACCCA
TTGTAGTAGAGAACAATGATAACGAGAACTACGTGGTACGACCCTCCTAT
CACTATGACAGACAGTCAGTAAACAGTGtcaggaaaaagaaaataactgC
ACCTCCTTAAAGGCCCCCTTAGAGTATTTAACATTGATGATATATGTCTT
TTTCGGGttattgtattgtatttaatATTTAAGTTTGTTAgatatagtag
agggcattttgtaaaatcgctcaattgttttggtcaaagcacttgttata
cacgtttggaaagctaaggggtaggggaatcaaaattacttaggttccat
tttttttcggacacttagGTGTggtcggacaaatatgacggtctcaggta
aaaattatagggtcaaaaattaatgaaaattttagcttgagataacggag
acctgttttatttttttggaaagctctcaaaaaattaggattagagatat
attgcaagtataggtgatttctgttcCTAAcccgagatattaacccttaa
aaacagtgtttttcagccagaaacagctttTTTGTTCAGTTTGCGCTTTT
TGATCACTTTCGCAACAAGAAATGGACAAAAGTTactattttattaaaat
ttctccCAGCGAAATATATAAACTTTCATGACCTTAAAATTAAAGAGCCA
AAGTTGACTTTTCCAATCAAAT Coding sequence (CDS) from alignment at scaffold_48:109600..111871 >TCONS_00068186 ID=TCONS_00068186|Name=TCONS_00068186|organism=Clytia hemisphaerica|type=CDS|length=1629bp|location=Sequence derived from alignment at scaffold_48:109600..111871 (Clytia hemisphaerica)
ATGGCGGCACTCAACGTTCTAGCAACTCGATATGCTGCGGCTAAACATCA
ATATAAAGCAAAccaaaaattgagtaaaaaacGGTCAGCACGAGAACCGT
CCACCACTATGAGGCTGGCTTCCAACATGGCAGCCCTTCATAATCCTGAT
TATTACGTCATGAAATTCATTGATAGTGCAAGGAAAGATTCCATAGAAGC
TGCTAAGAAACGGAATGAACAATCTTCTTCGTCTAAATTTGACCCCTCTT
CGGAAAATAAAGATTCACCTTCGGCTGCGAGCAAACTCAATAGAAGTACA
ATCAAGAGACTGGATAGTGGTGCAGATGCTTTAGATCCGACAGCTATTTC
CACTTATTACGTGAAGAAATTCATCAATAATGCAAGGGGAAAGAAAGTTC
CTGCGAGTTTAAAACGCGTACAGTCCAAGCAAGAAGGCAGTCCTGTTGCG
CCTGTAAAAGTTGCACCTGTAAAAGTTGGACCATCAACAATATACTACGC
GaggaaattcattaaaaacaccAAGAAGAAAATTGAAGCAACCAAACAGC
ACGAGTCAAATGTTGTATCGATCTCTGAATGTGTTGCTACTGATGGTGAA
GCTTCCAAGACAACAAAAGGAATCGAAAACAACAGAGAAGACCCAGCACC
AAGTGATAAACAGTCTTTAAGTCTCCCTTCCATTTATTTCGTCAGAAAGT
TCATCACCAATGCAAAAGGGGAGAAAGTGCCCTCCAGTTTGAGACGAGTG
CAAACAAAACGAGATATAACCCGCGAAGAACCATCGCCAACTTCCAAAAC
TGCGTCGATGAAAGACTCAGCCTCTTCTGTGTATTATGTCAacaaattca
tcaaaaatgcaaaaaagaaagctttgaaaaatgttcctaTACATCAGGAC
AATGAACAGGACATTCATTGTGGCTTAGGACCTACAAGTTCGGATGAAAT
AGGAAAGAAGggtgaagaaatgaaaaaaagtaacAATGAGAATGAGATTA
CCAGCCTCGCTTCCGCTTACTATGTTCGAAAATTTGTCACTAACACAAAA
GGGAAGAAAGTTCCTGGAAGTCTAAGATTAGTGCGACCAAAATCAATTGA
CAGGCCAGATTATGCTAATAGCTCATTGAGCGACCAAAAAATTCCGTCTA
TACTCCATTTGAATAAAACCAACGATGATACGTTACAAAGAAAAAAGGTA
TCCACGAGCTCTGAAAATGAGTTTACCTTATCGAGAGTTTCCGATTCTCA
TGTTACTAAAGTGGATAGAGACCTCACGAAAGGAATCGTTGTGGATGAAA
TGGCCCCCTCCACTTATTACGTCAAGAAGTTTATCAGAAATGCCAAGGAG
AAGGGAAGACTCGACACCTCTAAAATGCGAATTCCTACAAAGAATAATTC
ACTTGGCAGGAGTACTGGAACAGAAGTCATCCAGCCCATAGCCTCAGCAT
ATATTGTCAATACTTTGAGTAgcgaaaattcaaaacaaagcacGGCTAGA
CACATAATTGAAAAACCCATTGTAGTAGAGAACAATGATAACGAGAACTA
CGTGGTACGACCCTCCTATCACTATGACAGACAGTCAGTAAACAGTGtca
ggaaaaagaaaataactgCACCTCCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068186-exon-scaffold_48-1491911889:109600..111871 | TCONS_00068186-exon-scaffold_48-1491911889:109600..111871 | Clytia hemisphaerica | exon |
| TCONS_00068186-exon-scaffold_48-1510915933:109600..111871 | TCONS_00068186-exon-scaffold_48-1510915933:109600..111871 | Clytia hemisphaerica | exon |
| TCONS_00068186-exon-scaffold_48-1575043694:109600..111871 | TCONS_00068186-exon-scaffold_48-1575043694:109600..111871 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:109600..111871 . |
Blast
The following BLAST results are available for this feature:
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