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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068185 ID=TCONS_00068185|Name=TCONS_00068185|organism=Clytia hemisphaerica|type=transcript|length=1463bp
AGCGTCTTGTAATGGCTTCAAAAAAAGCTTTTGTTGGATAAAAAAGATAT
CTTTGTAATCGCACTTTaaagaacaaactttttgataggTATTCCAAAGT
ATCCACTCTATCCTGCCGAATTTTAGATGCAATGAATAAATCATAATAAA
GCCTTATAGAAATTTTTACGATCGAAGCCTTAAAAATAGAGGGATAATCC
TGTTAATCAACACAGATGTGTGCTAGCTTCTAAAACAAAACGCCAACTAT
GACGTCACACGTACAAATCTTTAAAGGGATATTATAACACATTGACTGAA
GGTCTTTTGATGTAACATAGCTCTTTCGATAGCTCtcgttataaattttt
ttaaactttccaaaaaagtgtAATGAAGGATTTGACGTTAGATCCCCTTT
AAACGACCCAAACAATTATCGAGGAATCAGCCTTCTTCCCATCATTACAA
AAATATTGGAACTTATTGTGCTTGAAAAATGTCCTCAGCTTACCGACCAC
AAGAACTCTCAATTTGGTTTTGTCAAAGCATCTTCATCAATCCACGCTGA
GCTAATCATTCAGGACACTATCAGGTATTATAATAACAATGGCTCACCCG
TATATATTTGTAGTTTGGACATTGAAAAAGCCTTTGATTGTTGTAATTGG
AACACCCTATTTACAAAATTGCTAGACAAAAACATACCTAATGCAATACT
AAACTTTTTAATTCAACTATATATGAACAGTACAGCCTTTGTCTGCTATG
GTGCTAACCACTCTAAAACTTTCTCACTCACTCAAGGAGTACGTCAAGGT
GGAATCCTATCACCATATTTATACAACATATACACAGAAGACCTTCTCAC
CAACGTCAAAAGTATGAAAATCGGATGCTCACTACCGAATGGACTACGTA
CTGCCATCATTGCATATGCTGATGACATAATACTCATGAGTCCCTCCCTC
AAACATCTGCAATCTATGGTTAGTTTATGTGAGGAACATGGAAAAGATAA
TGGTTTAAAGTTCAATccatcaaaaactaaaactcaaTTTGTTATTTCTG
GTCAAAGCAAATTAACTAATCCAAAACTGAACCTCCAATCAACCGAAATC
AATCCACAGGACACACTAAATCATCTTGGCTTCCATTGGTGTGTTAAAAA
TGACAAACTTTCTCTAAGCGGGCACAAAGAATCTCGAATATCAGAATTAT
GGTCTGTAGTTACCTCACTTATAACCTCTGGCATAAGGCACTGTCACCCA
AACGCCATAATCAGCATCTACAATTCAATAGTCTTACCAAAGCTCCTTTA
TGGCCTAGAACTTGTTGATCTCACAAAAACAGAATTAGAATTTTTAAACA
GGCAGGCCAGGTCAAGCCTAAAAGCACTGTTCAACGTCTCTAAAAATAGC
AAGAATCTCTTGAATAAAATCTACAATATCCCTGACATCTCAACTCTCTT
GGAAGAAAGGANN Run BLAST on NCBI protein sequence of TCONS_00068185-protein >TCONS_00068185-protein ID=TCONS_00068185-protein|Name=TCONS_00068185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
MNSTAFVCYGANHSKTFSLTQGVRQGGILSPYLYNIYTEDLLTNVKSMKI
GCSLPNGLRTAIIAYADDIILMSPSLKHLQSMVSLCEEHGKDNGLKFNPS
KTKTQFVISGQSKLTNPKLNLQSTEINPQDTLNHLGFHWCVKNDKLSLSG
HKESRISELWSVVTSLITSGIRHCHPNAIISIYNSIVLPKLLYGLELVDL
TKTELEFLNRQARSSLKALFNVSKNSKNLLNKIYNIPDISTLLEERX Run BLAST on NCBI transcript from alignment at scaffold_48:93053..94515 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068185 ID=TCONS_00068185|Name=TCONS_00068185|organism=Clytia hemisphaerica|type=transcript|length=1463bp|location=Sequence derived from alignment at scaffold_48:93053..94515 (Clytia hemisphaerica)
NNTCCTTTCTTCCAAGAGAGTTGAGATGTCAGGGATATTGTAGATTTTAT
TCAAGAGATTCTTGCTATTTTTAGAGACGTTGAACAGTGCTTTTAGGCTT
GACCTGGCCTGCCTGTTTAAAAATTCTAATTCTGTTTTTGTGAGATCAAC
AAGTTCTAGGCCATAAAGGAGCTTTGGTAAGACTATTGAATTGTAGATGC
TGATTATGGCGTTTGGGTGACAGTGCCTTATGCCAGAGGTTATAAGTGAG
GTAACTACAGACCATAATTCTGATATTCGAGATTCTTTGTGCCCGCTTAG
AGAAAGTTTGTCATTTTTAACACACCAATGGAAGCCAAGATGATTTAGTG
TGTCCTGTGGATTGATTTCGGTTGATTGGAGGTTCAGTTTTGGATTAGTT
AATTTGCTTTGACCAGAAATAACAAAttgagttttagtttttgatggATT
GAACTTTAAACCATTATCTTTTCCATGTTCCTCACATAAACTAACCATAG
ATTGCAGATGTTTGAGGGAGGGACTCATGAGTATTATGTCATCAGCATAT
GCAATGATGGCAGTACGTAGTCCATTCGGTAGTGAGCATCCGATTTTCAT
ACTTTTGACGTTGGTGAGAAGGTCTTCTGTGTATATGTTGTATAAATATG
GTGATAGGATTCCACCTTGACGTACTCCTTGAGTGAGTGAGAAAGTTTTA
GAGTGGTTAGCACCATAGCAGACAAAGGCTGTACTGTTCATATATAGTTG
AATTAAAAAGTTTAGTATTGCATTAGGTATGTTTTTGTCTAGCAATTTTG
TAAATAGGGTGTTCCAATTACAACAATCAAAGGCTTTTTCAATGTCCAAA
CTACAAATATATACGGGTGAGCCATTGTTATTATAATACCTGATAGTGTC
CTGAATGATTAGCTCAGCGTGGATTGATGAAGATGCTTTGACAAAACCAA
ATTGAGAGTTCTTGTGGTCGGTAAGCTGAGGACATTTTTCAAGCACAATA
AGTTCCAATATTTTTGTAATGATGGGAAGAAGGCTGATTCCTCGATAATT
GTTTGGGTCGTTTAAAGGGGATCTAACGTCAAATCCTTCATTacactttt
ttggaaagtttaaaaaaatttataacgaGAGCTATCGAAAGAGCTATGTT
ACATCAAAAGACCTTCAGTCAATGTGTTATAATATCCCTTTAAAGATTTG
TACGTGTGACGTCATAGTTGGCGTTTTGTTTTAGAAGCTAGCACACATCT
GTGTTGATTAACAGGATTATCCCTCTATTTTTAAGGCTTCGATCGTAAAA
ATTTCTATAAGGCTTTATTATGATTTATTCATTGCATCTAAAATTCGGCA
GGATAGAGTGGATACTTTGGAATAcctatcaaaaagtttgttctttAAAG
TGCGATTACAAAGATATCTTTTTTATCCAACAAAAGCTTTTTTTGAAGCC
ATTACAAGACGCT Coding sequence (CDS) from alignment at scaffold_48:93053..94515 >TCONS_00068185 ID=TCONS_00068185|Name=TCONS_00068185|organism=Clytia hemisphaerica|type=CDS|length=741bp|location=Sequence derived from alignment at scaffold_48:93053..94515 (Clytia hemisphaerica)
NNTCCTTTCTTCCAAGAGAGTTGAGATGTCAGGGATATTGTAGATTTTAT
TCAAGAGATTCTTGCTATTTTTAGAGACGTTGAACAGTGCTTTTAGGCTT
GACCTGGCCTGCCTGTTTAAAAATTCTAATTCTGTTTTTGTGAGATCAAC
AAGTTCTAGGCCATAAAGGAGCTTTGGTAAGACTATTGAATTGTAGATGC
TGATTATGGCGTTTGGGTGACAGTGCCTTATGCCAGAGGTTATAAGTGAG
GTAACTACAGACCATAATTCTGATATTCGAGATTCTTTGTGCCCGCTTAG
AGAAAGTTTGTCATTTTTAACACACCAATGGAAGCCAAGATGATTTAGTG
TGTCCTGTGGATTGATTTCGGTTGATTGGAGGTTCAGTTTTGGATTAGTT
AATTTGCTTTGACCAGAAATAACAAAttgagttttagtttttgatggATT
GAACTTTAAACCATTATCTTTTCCATGTTCCTCACATAAACTAACCATAG
ATTGCAGATGTTTGAGGGAGGGACTCATGAGTATTATGTCATCAGCATAT
GCAATGATGGCAGTACGTAGTCCATTCGGTAGTGAGCATCCGATTTTCAT
ACTTTTGACGTTGGTGAGAAGGTCTTCTGTGTATATGTTGTATAAATATG
GTGATAGGATTCCACCTTGACGTACTCCTTGAGTGAGTGAGAAAGTTTTA
GAGTGGTTAGCACCATAGCAGACAAAGGCTGTACTGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068185-exon-scaffold_48-1491911889:93053..94515 | TCONS_00068185-exon-scaffold_48-1491911889:93053..94515 | Clytia hemisphaerica | exon |
| TCONS_00068185-exon-scaffold_48-1510915933:93053..94515 | TCONS_00068185-exon-scaffold_48-1510915933:93053..94515 | Clytia hemisphaerica | exon |
| TCONS_00068185-exon-scaffold_48-1575043694:93053..94515 | TCONS_00068185-exon-scaffold_48-1575043694:93053..94515 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:93053..94515 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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