TCONS_00068175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068175
Unique NameTCONS_00068175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length636

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068175 ID=TCONS_00068175|Name=TCONS_00068175|organism=Clytia hemisphaerica|type=transcript|length=636bp
ANCCACTGAAGAAGAGTCTGATGAACCAAAGAAGAAAGAAACCACCAAAA
AGAAACCTCAAAAACCAGCTCCTGAAAAACGAGAACGAAAGAAACCGATG
GAAAGGAGGCCATTGAGTGaatctgaagaagaagatgagaAAGATGAACC
AGTAGCCAAGAAGAGTAGAAAAGAAGAAAGTCCCAAGAAGAAGAAGCAGG
AAAGTAGCAGCAGTGGTAGTGGTAGTAAAATGGTCACAACCAAAGATGGT
GAAGTCTACTGGGAGCTTACACACAATCGACGCGTTGGTTTATCAGAGTT
CAGAGGGAAGATGTTCGTCAACATCAGGGAGTATTATGAGAAAAATGGAG
AACTTCTGCCTGGGAGGAAAGGCATCAGTCTACCTATGGAACAATGGAAA
AAGTTGAGCAAACTTTCCAAAGAAATCAATCATCATATAGAAGAAGAGGG
GTATTAAAGGAAAACACCAAACAGTGGTTGGTGTTGCTGGTGCTTTTTAC
TGAGTAGGGATGAGTGACTACTCATGTTGGTTACTGCTGCAGTTTCCCAT
TACCTTGTAAAGTGTGTTTTTAATACTGTAAATATTATTAGGTTTAAACA
AGTGATTGTTCTTAATTATGTCATCAGAGCAATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_48:396845..398563-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068175 ID=TCONS_00068175|Name=TCONS_00068175|organism=Clytia hemisphaerica|type=transcript|length=1719bp|location=Sequence derived from alignment at scaffold_48:396845..398563- (Clytia hemisphaerica)
ANCCACTGAAGAAGAGTCTGATGAACCAAAGAAGAAAGAAACCACCAAAA
AGAAACCTCAAAAACCAGCTCCTGAAAAACGAGAACGAGTAAGTGCCAAC
AACTACCATACTCGACATTGGTATCAAAATTCAATCAATAGATGGATTTT
CTCATAGCGAGATGGGATGAATTTTCCGTTGTCACGTGATCTATTTTTAG
TATAATTTAATTCGTCTAACAGAACGTCTGGTGAATTTATCCAATACAAT
AAGCTGAGCCAGCCTTGGCCAGGTTTGATTCGTATGAACATCTCATTAGT
CTCTAGAATGTTATAGTTACAAAGTATGCCATAACCGTATTTGGCATTAA
AAATATTTTTTTGTACTTTTTTACAAAAATCATACAATGGGATTTGACAT
CTCTTTCTTCAATCATGCTTTGAAAGCGTTTATAGAAAACAAAACAGGTT
TGGAAGAAGGAATAATGACTTTAGACTCTCTTTTTTAGAAGAAACCGATG
GAAAGGAGGCCATTGAGTGAATCTGAAGAAGAAGATGAGAAAGATGAACC
AGTAGCCAAGAAGAGTAGAAAAGAAGAAAGTCCCAAGAAGAAGAAGCAGG
AAAGTAGCAGCAGTGGTAGTGGTAGTAAAATGGTCACAACCAAAGATGGT
GAAGTCTACTGGGAGGTTATTCTCATTATTTTCTTTCTCTTACATTTTCA
AGATCAATGTGTCGAAACTTATTTTAAAAGGTTTTCTACGGGAATATAAA
AAGCTTATTTTAGGCAGTGTCTTCATACTGAGTCAGATAAATTAAAGCTA
CTTTTTACGCAACGATATCCTGCAAACAAGTGAAAGATTTAAAGTTGTTT
CGAGATGTGACCTCACATTCTATTGCTTTTGTAAACAAATGAAAATAGCG
AAGTTGATTGCGAGCAAATTTGCAATCGAATGTTTTGATTATAAGATAGA
AAACTTTCTATTTATTATAAACATAAAAATATTCGAAAGAGTATCAGTAA
AAGGCCCTTTGTTTGAGGAATGTTTTTTTTATTCAATGTATTTTCATTTT
TTCAAAACCTCAGTGCTTTGTTCAACACTTTACAAACTCGTTGATATGTT
TCTAATTTTTTAGGCTTTCATCTAATGGACTCTAAATCATTTTTTTTTAC
TGTAGCTTACACACAATCGACGCGTTGGTTTATCAGAGTTCAGAGGGAAG
ATGTTCGTCAACATCAGGGAGTATTATGAGAAAAATGGAGAACTTCTGCC
TGGGAGGAAAGGTATTGATCCGTTGCCGTTTTAAATTTGATTTCTCACAA
AAATATAATTTTTCGTCTTTTAAAAACACATGTCAAAGGCTATAGAACCC
ATTCTGAATAGACTTTATTTCACTTGATCCGATCATTGGACTTAGAAATA
ACACTTCTCCGCCGTCATAAGTTTTTAACTTCTTTTTTATCTCCATATTT
TTAGGCATCAGTCTACCTATGGAACAATGGAAAAAGTTGAGCAAACTTTC
CAAAGAAATCAATCATCATATAGAAGAAGAGGGGTATTAAAGGAAAACAC
CAAACAGTGGTTGGTGTTGCTGGTGCTTTTTACTGAGTAGGGATGAGTGA
CTACTCATGTTGGTTACTGCTGCAGTTTCCCATTACCTTGTAAAGTGTGT
TTTTAATACTGTAAATATTATTAGGTTTAAACAAGTGATTGTTCTTAATT
ATGTCATCAGAGCAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042552XLOC_042552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068175-exon-scaffold_48-1575043694:398476..398563TCONS_00068175-exon-scaffold_48-1575043694:398476..398563Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1575043694:397899..398075TCONS_00068175-exon-scaffold_48-1575043694:397899..398075Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1575043694:397303..397408TCONS_00068175-exon-scaffold_48-1575043694:397303..397408Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1575043694:396845..397109TCONS_00068175-exon-scaffold_48-1575043694:396845..397109Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1510915933:398476..398563TCONS_00068175-exon-scaffold_48-1510915933:398476..398563Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1510915933:397899..398075TCONS_00068175-exon-scaffold_48-1510915933:397899..398075Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1510915933:397303..397408TCONS_00068175-exon-scaffold_48-1510915933:397303..397408Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1510915933:396845..397109TCONS_00068175-exon-scaffold_48-1510915933:396845..397109Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1491911889:398476..398563TCONS_00068175-exon-scaffold_48-1491911889:398476..398563Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1491911889:397899..398075TCONS_00068175-exon-scaffold_48-1491911889:397899..398075Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1491911889:397303..397408TCONS_00068175-exon-scaffold_48-1491911889:397303..397408Clytia hemisphaericaexon
TCONS_00068175-exon-scaffold_48-1491911889:396845..397109TCONS_00068175-exon-scaffold_48-1491911889:396845..397109Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:396845..398563 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
153.102	152.05	233.993	267.668	25.6198	25.4432	37.4145	43.2726	59.3864	39.4639	48.0413	43.0744	22.8816	23.5862	41.3687	46.8314	72.0044	59.4295	8.41985	7.78154	31.3132	27.1995	49.1822	38.8021	89.4171	84.4919	25.3227	19.0843	20.6056	22.8506
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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