TCONS_00068174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068174
Unique NameTCONS_00068174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068174 ID=TCONS_00068174|Name=TCONS_00068174|organism=Clytia hemisphaerica|type=transcript|length=1248bp
ttttgatGCATGTATTAGGCTTTCCATTTTAAATGAAGCTTGAcctgaat
ttgattttcaataaataaataCCAGAATTTCATGAATAAATGATGCATTC
GAATTCTAAGCTGAGAAAGTTTACAATGAATGAAGAATGAACAAatacat
tattgataacaagcAAAGTGAAAAGCAATGTGAAATTGAAAACCTTTGGT
TGTTTggaaagaaatgaagaaagcaaGAACAATGAAAGGAAGTGCAACGT
GAAAGATGTTAAGCAACCGTTCAAACAACGAGAAATCGTTGAAATCAGTA
TCCGATGATCTTTCGGACATTAGGAACGACCTAACGGACGCTATCAAATA
CAACGATGAAAAACTTGCATTAGTGGCTGACAAACTACAACAATTGGAAG
TTCGAGTGGACGAAATCAATGCTGACATGCGTAGTTCAAAGAATGGCTCA
CTCTTATGGAAAGTGGGCAATTTTACGGAACTTTTGGAACGCTCGCACCA
GGACCATCAAACATTCGTTGCCAGTGATTTTGTTTACACAGGTATCTATG
GTTACAAGTTAGAGTTCAGACTTTATCCTTATGGTGTTGGATTAGGCGAA
GGAACGCATTTATCACTGTATGTTCTTGTGCACAAAACGGAACATGATTT
ATTGTTACACTGGCCCTTTGAACAGAAAGTGAAAGTCAAATTGTTAAACA
TGAACGAATCGTCATCGAAACGAGAACACCACATCGCAACTATCGGCCCT
GATCGTCATTCGTCAAGTTTCGTGCGTCCTTTACATGAACACAACCCTGG
TTGGGGATTTCCCACTTTTCTTTCGCACCGTGATTtacaaaagaaaactt
ttctcCGAGAGAATTGTTTGTTCATCAAACTTCTGGTGGAACCTTACGAT
GCATTGGATATCTTCAAACAGAGTTATGATTGATAAGAAATTTGAGATTG
TCTCTTCTTTGGCAGTCATTATGACTTGATGACAGAAAAGCGTACGTAAT
CATACGCAGACATTCTCCCTTGAGGCGGAAATCAAGATAGGATAATTTTC
GACATTTTTAACTAGTGTGTAATACATACCGAGGAAAGATATCTAGCAAT
CTTCAGATCATCTGCTCATGAGATTGTACAACATCACTTAATGTTAACAT
CTCGACTGATTGATTTAACATTTCAATGtcaataatttactcaaattacA
TCTCTTATCTTTTTCTATACGAAATCAAATGTAAGATATATAAATGTG
Run BLAST on NCBI

protein sequence of TCONS_00068174-protein

>TCONS_00068174-protein ID=TCONS_00068174-protein|Name=TCONS_00068174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MLSNRSNNEKSLKSVSDDLSDIRNDLTDAIKYNDEKLALVADKLQQLEVR
VDEINADMRSSKNGSLLWKVGNFTELLERSHQDHQTFVASDFVYTGIYGY
KLEFRLYPYGVGLGEGTHLSLYVLVHKTEHDLLLHWPFEQKVKVKLLNMN
ESSSKREHHIATIGPDRHSSSFVRPLHEHNPGWGFPTFLSHRDLQKKTFL
RENCLFIKLLVEPYDALDIFKQSYD
Run BLAST on NCBI

transcript from alignment at scaffold_48:395009..396520-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068174 ID=TCONS_00068174|Name=TCONS_00068174|organism=Clytia hemisphaerica|type=transcript|length=1512bp|location=Sequence derived from alignment at scaffold_48:395009..396520- (Clytia hemisphaerica)
TTTTGATGCATGTATTAGGCTTTCCATTTTAAATGAAGCTTGACCTGAAT
TTGATTTTCAATAAATAAATACCAGAATTTCATGAATAAATGATGCATTC
GAATTCTAAGCTGAGAAAGTTTACAATGAATGAAGAATGAACAAATACAT
TATTGATAACAAGCAAAGTGAAAAGCAATGTGAAATTGAAAACCTTTGGT
TGTTTGGAAAGAAATGAAGAAAGCAAGAACAATGAAAGGAAGTGCAACGT
GAAAGGTACTGCAGTGTTTGTTGTCCCTTTTAATCGTTTTTAGGAACTAG
TCAAGCCCTTTTTATTTGGGTATGTCTAATCGCTCGTTTGCGTTATTTAG
TTTGTTTGTTTACTTTTTTTCGCTGTCAGCTTCTATATATATCTTTCTGG
TTCTCTGGATTTAAATGAAATTTACCCTTTAAAATTTGTTATGTTTTTAC
ATAATAGTTATTTATTTTGATCTGTGCTGGATCTATTTCAAATTGAATAT
TTCTCTTTGTTTTCCCTAGATGTTAAGCAACCGTTCAAACAACGAGAAAT
CGTTGAAATCAGTATCCGATGATCTTTCGGACATTAGGAACGACCTAACG
GACGCTATCAAATACAACGATGAAAAACTTGCATTAGTGGCTGACAAACT
ACAACAATTGGAAGTTCGAGTGGACGAAATCAATGCTGACATGCGTAGTT
CAAAGAATGGCTCACTCTTATGGAAAGTGGGCAATTTTACGGAACTTTTG
GAACGCTCGCACCAGGACCATCAAACATTCGTTGCCAGTGATTTTGTTTA
CACAGGTATCTATGGTTACAAGTTAGAGTTCAGACTTTATCCTTATGGTG
TTGGATTAGGCGAAGGAACGCATTTATCACTGTATGTTCTTGTGCACAAA
ACGGAACATGATTTATTGTTACACTGGCCCTTTGAACAGAAAGTGAAAGT
CAAATTGTTAAACATGAACGAATCGTCATCGAAACGAGAACACCACATCG
CAACTATCGGCCCTGATCGTCATTCGTCAAGTTTCGTGCGTCCTTTACAT
GAACACAACCCTGGTTGGGGATTTCCCACTTTTCTTTCGCACCGTGATTT
ACAAAAGAAAACTTTTCTCCGAGAGAATTGTTTGTTCATCAAACTTCTGG
TGGAACCTTACGATGCATTGGATATCTTCAAACAGAGTTATGATTGATAA
GAAATTTGAGATTGTCTCTTCTTTGGCAGTCATTATGACTTGATGACAGA
AAAGCGTACGTAATCATACGCAGACATTCTCCCTTGAGGCGGAAATCAAG
ATAGGATAATTTTCGACATTTTTAACTAGTGTGTAATACATACCGAGGAA
AGATATCTAGCAATCTTCAGATCATCTGCTCATGAGATTGTACAACATCA
CTTAATGTTAACATCTCGACTGATTGATTTAACATTTCAATGTCAATAAT
TTACTCAAATTACATCTCTTATCTTTTTCTATACGAAATCAAATGTAAGA
TATATAAATGTG

Coding sequence (CDS) from alignment at scaffold_48:395009..396520-

>TCONS_00068174 ID=TCONS_00068174|Name=TCONS_00068174|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_48:395009..396520- (Clytia hemisphaerica)
ATGTTAAGCAACCGTTCAAACAACGAGAAATCGTTGAAATCAGTATCCGA
TGATCTTTCGGACATTAGGAACGACCTAACGGACGCTATCAAATACAACG
ATGAAAAACTTGCATTAGTGGCTGACAAACTACAACAATTGGAAGTTCGA
GTGGACGAAATCAATGCTGACATGCGTAGTTCAAAGAATGGCTCACTCTT
ATGGAAAGTGGGCAATTTTACGGAACTTTTGGAACGCTCGCACCAGGACC
ATCAAACATTCGTTGCCAGTGATTTTGTTTACACAGGTATCTATGGTTAC
AAGTTAGAGTTCAGACTTTATCCTTATGGTGTTGGATTAGGCGAAGGAAC
GCATTTATCACTGTATGTTCTTGTGCACAAAACGGAACATGATTTATTGT
TACACTGGCCCTTTGAACAGAAAGTGAAAGTCAAATTGTTAAACATGAAC
GAATCGTCATCGAAACGAGAACACCACATCGCAACTATCGGCCCTGATCG
TCATTCGTCAAGTTTCGTGCGTCCTTTACATGAACACAACCCTGGTTGGG
GATTTCCCACTTTTCTTTCGCACCGTGATTTACAAAAGAAAACTTTTCTC
CGAGAGAATTGTTTGTTCATCAAACTTCTGGTGGAACCTTACGATGCATT
GGATATCTTCAAACAGAGTTATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042551XLOC_042551Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068174-proteinTCONS_00068174-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068174-exon-scaffold_48-1575043694:396266..396520TCONS_00068174-exon-scaffold_48-1575043694:396266..396520Clytia hemisphaericaexon
TCONS_00068174-exon-scaffold_48-1575043694:395009..396001TCONS_00068174-exon-scaffold_48-1575043694:395009..396001Clytia hemisphaericaexon
TCONS_00068174-exon-scaffold_48-1510915933:396266..396520TCONS_00068174-exon-scaffold_48-1510915933:396266..396520Clytia hemisphaericaexon
TCONS_00068174-exon-scaffold_48-1510915933:395009..396001TCONS_00068174-exon-scaffold_48-1510915933:395009..396001Clytia hemisphaericaexon
TCONS_00068174-exon-scaffold_48-1491911889:396266..396520TCONS_00068174-exon-scaffold_48-1491911889:396266..396520Clytia hemisphaericaexon
TCONS_00068174-exon-scaffold_48-1491911889:395009..396001TCONS_00068174-exon-scaffold_48-1491911889:395009..396001Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:395009..396520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.77559	1.76478	0.966548	0.416071	1.61167	0.76414	0.878003	1.43846	1.87032	1.4613	1.52216	1.38721	4.11041	2.31123	1.95831	2.7258	2.81966	2.44342	2.39567	2.81076	2.24497	2.41549	1.99671	2.45599	1.53977	2.42122	0.234105	0.34978	0.833788	0.810884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002083MATH/TRAF_dom
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00068174 vs. Swiss-Prot (Human)
Match: TRAF2 (TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.619e-28
Identity = 68/194 (35.05%), Postives = 105/194 (54.12%), Query Frame = 1 
Query:  346 KYNDEKLALVADKLQQLEVRV---DEINADMR--------SSKNGSLLWKVGNFTELLERSHQDHQTFVASDFVYTGIYGYKLEFRLYPYGVGLGEGTHLSLYVLVHKTEHDLLLHWPFEQKVKVKLLNMNESSSKREHHIATIGPDRHSSSFVRPLHEHNPGWGFPTFLSHRDLQKK-TFLRENCLFIKLLVE 891
            + + +K+  ++ K+QQLE  +   D   AD+         S+ +G  +WK+ +F    + +       + S   YT  YGYK+  R+Y  G G G GTHLSL+ +V K  +D LL WPF QKV + LL+ N     REH I    PD  SSSF RP+++ N   G P F     ++ K +++R++ +FIK +V+
Sbjct:  308 RLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQN----NREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVD 497
The following BLAST results are available for this feature:
BLAST of TCONS_00068174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF21.619e-2835.05TNF receptor-associated factor 2 OS=Homo sapiens G... [more]
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