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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068172 ID=TCONS_00068172|Name=TCONS_00068172|organism=Clytia hemisphaerica|type=transcript|length=4647bpRun BLAST on NCBI protein sequence of TCONS_00068172-protein >TCONS_00068172-protein ID=TCONS_00068172-protein|Name=TCONS_00068172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp MDVYSFGLMVACLLVIFYFHTKIILSALCIFMVVITCRTYLLHFYRNLCGRun BLAST on NCBI transcript from alignment at scaffold_48:369894..394621- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068172 ID=TCONS_00068172|Name=TCONS_00068172|organism=Clytia hemisphaerica|type=transcript|length=24728bp|location=Sequence derived from alignment at scaffold_48:369894..394621- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_48:369894..394621- >TCONS_00068172 ID=TCONS_00068172|Name=TCONS_00068172|organism=Clytia hemisphaerica|type=CDS|length=6288bp|location=Sequence derived from alignment at scaffold_48:369894..394621- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00068172 vs. Swiss-Prot (Human)
Match: GLPK3 (Glycerol kinase 3 OS=Homo sapiens GN=GK3P PE=2 SV=2) HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0 Identity = 288/488 (59.02%), Postives = 373/488 (76.43%), Query Frame = 3
Query: 189 VGAIDQGTSSSRFLLFSSETEEVIASHQVETTSHYPHEGWCQQDPKEILSTVLLCIEETLKKC---SVDVKQIKSIGITNQRESTIVWDKTTGNPIYPAIIWLDGRTGETVEKLIAKTPSKSKEEFQHLCGLPISTYFSAVKLRWILDHCVEAEKALQEDRLCFGTVDTWLLWNLTGDVKGGVYATDVTNASRTMLMNLSTLQWDDQMCKFFDVPKSMLPEIRSSSEIYGKMKTGSLTGIPISGILGDQQAALVGQKCFKEGQAKNTYGTGNFLLYNTGEKPVFSKHGLLTTVGYQFGKEQAATYALEGSIAITGAAVKWLRDNLGLIKSAAETEELAASVSDNGDVYFVPAFSGLFAPYWQTDARGVIIGLTQYTTKAHIVRATLEAVCFQTREILESMDLDSGIPLNELLVDGGMTINEFLMQLQSNILGINVVRAKMXXXXXXXXXXXXXXXSGVDCWKI--KEISSIGKDVFSPK-NTDQGKIR 1634
VGA+DQGTSS+RFL+F+S T E+++ HQVE +P EGW +QDPKEIL +V CIE+T +K ++ + IK+IG++NQRE+T+VWDK TG P+Y A++WLD RT TVE L + P + + GLP+STYFSAVKLRW+LD+ + +KA++E R FGT+D+WL+W+LTG V GGV+ TDVTNASRTML N+ +L+WD Q+C+FF +P +LP +RSSSEIYG MK G+L G+PISG LGDQ AALVGQ CF+ GQAKNTYGTG FLL NTG K VFS HGLLTTV Y+ G+++ YALEGS+AI GA ++WLRDNLG+IK++ E E+LA V + YFVPAFSGL+APYW+ ARG+I GLTQ+T K HI A LEAVCFQTREIL++M+ D GIPL+ L VDGGMT N+ LMQLQ++IL I VV+ M ETTALGAA+AAG A GVD W + +++S++ + F P+ N ++ +IR
Sbjct: 13 VGAVDQGTSSTRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEKTCEKLGQLNIGISNIKAIGVSNQRETTVVWDKITGEPLYNAVVWLDLRTQSTVESLSKRIPGNNNF-VKSKTGLPLSTYFSAVKLRWLLDNVRKVQKAVEEKRALFGTIDSWLIWSLTGGVNGGVHCTDVTNASRTMLFNIHSLEWDKQLCEFFGIPMEILPHVRSSSEIYGLMKAGALEGVPISGCLGDQSAALVGQMCFQIGQAKNTYGTGCFLLCNTGHKCVFSDHGLLTTVAYKLGRDKPVYYALEGSVAIAGAVIRWLRDNLGIIKTSEEIEKLAKEVGTSYGCYFVPAFSGLYAPYWEPSARGIICGLTQFTNKCHIAFAALEAVCFQTREILDAMNRDCGIPLSHLQVDGGMTSNKILMQLQADILYIPVVKPLMPETTALGAAMAAGAAEGVDVWSLEPEDLSAVTMERFEPQINAEESEIR 499 The following BLAST results are available for this feature:
BLAST of TCONS_00068172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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