TCONS_00068161 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068161
Unique NameTCONS_00068161
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length910

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068161 ID=TCONS_00068161|Name=TCONS_00068161|organism=Clytia hemisphaerica|type=transcript|length=910bp
CAATCATTTctcttttgatgaaaattcttTCTGCCGGGTACGAAATGATA
TTTTACCACTGCAGAGCAATGGAGGTCATTCGAAAGAAATTGGGAGGATT
GAAATCGAAATTAGACGAAGCAGAAAGGCAAGCAAATGCCACCGAAGATG
AACTCAACTCTATTAACGAAAAAGCTGATGATACGGAAGAGCAAGTGAAA
TTGGTTCAGGATAAACTGTCAAGCATCGAAGAAGAGCTAGACGATACAGA
ACGACGTCATGAGACGGTCTCACAGAAGTTGGTGGAACTAGAAGTACGAG
GTGACGAAGTGCAAAGACAGTACGGTGAACTGACCGCCAGAAGCGAAACG
GACCAAATAAAGATCGATGCGCTGGAAGAACAATTAAGTGAAGTCAAAAG
TAAAGATGAAGAACTCAGTGCAAATTATGAAACGatCAGTCAAGAGTTAT
CCGAAATAGAAGCCACTtatgatgaagaagaagaacgaTGCCAGGAAGCT
GATGTTCGCGTCAAAACATTGgaagaaaaattcattcaaCTTGGCAATAA
TTTGAGAAGCATGGAACGATATGAAATGAAATCCAACGAACGAGGAACAG
AAATTCAAGAGAAAATTGAAGAACTTGAAGCAAAATGCGCAGAGGCGAAA
GAGAAAGCAGAGCAATACGAAGCAAAGTCCAAAGAAATGGAAGATGAACT
CGAATCTTTAGAACAACAATGCCACGACGAAAAAGAGCGTTACTTTTCAT
GCAAGGGTGACTTAGAAAGAATATTGGAAGAAGTTCAAGgaatctaaaaa
aaacaaagtgattttttttggtttgtaGCACGTTAGCACAGATTTGTACA
TTGAGAATTATTACTGTATTTTGTATAATAGATATCCGAAACATATTTCA
TTTCACAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_48:151231..156817-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068161 ID=TCONS_00068161|Name=TCONS_00068161|organism=Clytia hemisphaerica|type=transcript|length=5587bp|location=Sequence derived from alignment at scaffold_48:151231..156817- (Clytia hemisphaerica)
CAATCATTTCTCTTTTGATGAAAATTCTTTCTGCCGGGTACGAAATGGTA
ATTTACCCTTCTTTGCTATTATTGAAAACAAAATCTTTAATTTTGAAAGG
AGCTAAAGAGGGGTTAAACATTTTTGAAACAATTTGGGCGTTACACAGAA
TAACTAATCCCCTTTTCTTTCGCATGACTCAAAAATGTTTTAAGCGACAG
CCAGTATTTCGCTGACTAAAATTGGGACAACACTGTTAAAAATATTTCAG
TTTTCAAAAATTAGTTGATTTTTGGGATATTTGATATTAGACAGATAATT
ACTTGGAAAGGACTGCCTACTTCTTATGATCATAAGAAGACAAGTTGAAG
GGTAGACAGACATGTAGACAGACGGACAGACAAAAGCATCCTTATATGGT
GTTTCCAGAAGTTGAATAAGATTTCTTTCCTGACCAAGAATGACTTCTTT
ATCTGTTATCAATTGATTATGCTCTAAACTATGTAGTTAATGAATCCAGA
TATACCTGACCCTGGATTTTTTTAAAGTTCAGTCTGATTCCATATGCCTG
TGATTCTCCAGTCAAGAATAATGAGATTTCTTCTAAAGTCTAACTTATTG
AGTTTAATTGTCCAACCTCGTGAAATCGACGGAAGACACGGCGTTGACAG
GAAAGGACGTCAATGTGCTCCGCGAAGGAGAGTTTGGTACAGACTATAAC
GATCTGCTCAGAGTCCCATTCGATACCCACTGTTACTTATTTGCAATTTT
TACCGGTGAATTACTTTAGGCGTACAAACTTTTACGGGCAGAAAATTTAT
GACCGGATTTGAGGAAAAAATGTTTTTCGTGAGCATAAACTTTCGCGAAT
CGTTGGATAAAAATGAGAATTTTGGAATGAAAATTGCCTTAAAAGTGAAA
AATATTCATTAAATTCGCTTAAGACGTATGCTCTTCGACTTAAAAAGGTG
TTAAAGGATAACAATACGCCCAAAATTTGACATTTATTACGATTTCGAGG
TTTTATAGATTTTTCGCGAGTATAAACTTTCGCAAATTAAGAATTTTCAA
AGACATTTACTTTCGCGAAAAAGGCCAAAATTCGCGCAAATCGTGAAAGT
TTCTGCTCGCGAAAGTTTGTACGCCTAAGTACCTCTTTCATGATCGTTGT
GATCGTCTTCCCAATATTTTCATTTGTTTCTTGCAAACCCTTCTCTTGCA
GATATTTTACCACTGCAGAGCAATGGAGGTCATTCGAAAGAAATTGGGAG
GATTGAAATCGAAATTAGACGAAGCAGAAAGGCAAGCAAATGCCACCGAA
GATGAACTCAACTCTATTAACGAAAAAGCTGATGATGTGAGTGCATCATT
CCGTAATTTCTTACGGAATCTATCTTTATCGTGAATAATCAATAAAATTA
TACGATATCTATGAAGAAGAAAAATCTAAAGCAACACAAGTGACACTTTG
TGTCCATTTTGTGATTCCCTAGAATTAAATGCAGGGCTTTTCGTCTTTTC
GCGGGTGTGACCGTGTTGACGATTTTCCTTATCCACTATTTTTTTAAATT
TGGTGATTTATTTTATTGTCAGGGCCCACGCCATGAAATTGAAAGTTGCG
GGGCAATGAATATAGAGTCTAAGGAGGCGCAACCAAAAATTTTTACTTCG
CAAAATAGTTGGCGATGGCGTGGGCTCTGCTTGTAAGATAGCTAAACGTT
GTTTTTGAGGTTTTTCCAGTCTGTTTGTTTGCATATCGTCCATTTTACAG
ACGGAAGAGCAAGTGAAATTGGTTCAGGATAAACTGTCAAGCATCGAAGA
AGAGCTAGACGATACAGAACGACGTCATGAGACGGTCTCACAGAAGTTGG
TGGAACTAGAAGTACGAGGTGACGAAGTGCAAAGACAGTACGGTGAACTG
ACCGCCAGAAGCGAAACGGACCAAATAAAGATCGATGCGCTGGAAGAACA
ATTAAGTGAAGTCAAAAGTAAAGATGAAGAACTCAGTGCAAATTATGAAA
CGGTAAGAACTATTCGCCCGTGTTTATATTAGATCTATGCATAAAAATTT
CCTAATTTTTTTAAAAATTATTCTAGAACTAAATTTCTTAAATTTCAGAT
TGTAGGCGGATGGAAGGCCAAGTTTGTGGAAATTTAGGTAAAAATACCAA
AAGCATAATTATTGGAAATTGAACAAAGTTCTTACCCTGAGTATCAGAGG
TTGAGAGAATATTTCAACCTCTGAAGACCAATAATAGAAATTTTATCGCG
CATGTATCAATCTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAATA
TTACCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGCCCCCCCCCCCAGCAGTTTGCGTGATTGCGTGATTGGGACTTTTTTCT
TGCGTGATGGCGTGATTAGAGATTTTTTTGGCGTGATGGCAAAAATTTGA
GGCGTGATGCGTGATCTGGGCTATTTTTCGCTATTTTTAGCGTCATGACA
GATTTTAGCAATTTTCGTGATGCGTGATAGAGAAAATCTTTTTGCGATGG
CGTGATCAGGGGTGCCGCTGGNTTAGCAATTTTCGTGATGCGTGATGGAG
AAAATCTTTTTGCGCGATGGCGTGATCAGGGGTGCCGCTGGGGGGGCCTC
CTCTATCACTGACTCTTTTTAAAAAGCATTAATGACATTTTTGAGTTGTG
TTTTCAACGACGGGAATAAAGATATCAACTTTGAAATTCATCTAAGATCT
TGGATGGTCGTCATGGTTACCTTTCTCTGCGTTGATTGCGTGCTGAATAG
AATCTGGATTGGTCGGCACAGCGTCGATATATGATTTCGACCTGTGCTTT
TCACGGTACAAATTTTGGTTTTCCCAAAAAAAGTTTCCTTCAACTCAGCA
ATTTCGTACCCAGTAAAATATAATCTTTCAAAGGCACGGGAAGATGTTCA
GTTTAAGCAAAACTAGTAAGATCTAGCTGCAGCAGATTTTTTTTCCGTAC
ATGGACGGAAGTATCATCGACGGTCGGGAGTATCTCATCTTTGTTGTTTG
GTTTTTACCCATATTATAATAACATTACCCCCGTCTTTTGTGTCATCTTA
TAAGTATTTCCTAATTTTGTGTTCTGCTGTGCGAGTGTGGCTCAACGGAT
AGCGCGCTGTGTTTCTGATCAGAAACTCTTTCATTTGGTGGGTTCGAACC
CCGGTCGGGTCGATATTTCAAGGTTTCAGATAAGTTTAAGATACTTCCGT
CCGTCGATGATACTCCCGACCGTCAAGATGAGATACTCCCGACCGTCGAT
GATACTTCCGTCCATGTACGGAAAAAAATTTGCCTAGCTGCAAGCATACT
TTCATTAACGATTTGATTGCAATCATTTCGGTCTTTTTGTTTTTCAGATC
AGTCAAGAGTTATCCGAAATAGAAGCCACTTATGATGAAGAAGAAGAACG
ATGCCAGGAAGCTGATGTGTAAGAATGAATCTCTTCCCATATTTGAATTT
CTTCAAAATAATTCGAACCCTGTCTCATGGCCTCGGTGAAACTCTTCAGA
AAGCTTGGGAAATCATTTTGTCTCTGCTTAACTCTCAATATATCTTTGAT
CCGTCCGACTCTGAACCAAATCTTTGTGAACTGAATTTCTACCAACAGTA
TATAACTCTATTTAGTCGCGTCAAAACATTGGAAGAAAAATTCATTCAAC
TTGGCAATAATTTGAGAAGCATGGAACGATATGAAATGAAATCCAACGAA
CGAGGAACAGAAATTCAAGAGAAAATTGAAGAACTTGAAGCAAAATGCGC
AGAGGTAAAGATATAAGAAAAGTTAAAAAAATCCTTCCACCTATGCTAAC
CGGTCTCCCTAACTGAAATAAATGACTGTTCCCCATGATGTTTTACTTAC
TTGATTATTTCTATTTCGTCAGGCGAAAGAGAAAGCAGAGCAATACGAAG
CAAAGTCCAAAGAAATGGAAGATGAACTCGAATCTTTAGAACGTAAGTTT
TTTGATTTTTATAGACATTGGACTATAACAACTACAGTAAGACACTTGTA
CCAATTTTTTATGGCAAGAATCTATTTGAGGAAAATTATAGATATCAACT
CCTCCTTGGGCAACAAATCAAACTTGGCTTTAGAACACAATCCTTTTCCG
AGGACGACTTTGCCCAAATACACCAGTGAAACATTTTCACTTACTGAGGA
TTAAAACCTCAGCGTATGAAAGTATTTTCCTGACGGGGATGACTTAACTT
TATCACCAAATTTTCTTTTTTTGAGAAGTGTCGAGCATGTGGCATACTAG
TGGGTATTAGACAATTTCAAATATTTTGTTTAGCTATTGTTGAAAACAAC
ACAACCTTTTGTCTTTCCAGACCATTTTCTTCAAATCATTGACATTGACG
AGTATTATTGAATAACTTTTTGTTTGTTTTATCTTTCTTAGAACAATGCC
ACGACGAAAAAGAGCGTTACTTTTCATGCAAGGGTGACTTAGAAAGAATA
TTGGAAGAAGTTCAAGGAATCTAAAAAAAACAAAGTGATTTTTTTTGGTT
TGTAGCACGTTAGCACAGATTTGTACATTGAGAATTATTACTGTATTTTG
TATAATAGATATCCGAAACATATTTCATTTCACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042542XLOC_042542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068161-exon-scaffold_48-1575043694:156771..156817TCONS_00068161-exon-scaffold_48-1575043694:156771..156817Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1575043694:155482..155616TCONS_00068161-exon-scaffold_48-1575043694:155482..155616Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1575043694:154816..155067TCONS_00068161-exon-scaffold_48-1575043694:154816..155067Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1575043694:152400..152470TCONS_00068161-exon-scaffold_48-1575043694:152400..152470Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1575043694:152064..152202TCONS_00068161-exon-scaffold_48-1575043694:152064..152202Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1575043694:151876..151945TCONS_00068161-exon-scaffold_48-1575043694:151876..151945Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1575043694:151231..151426TCONS_00068161-exon-scaffold_48-1575043694:151231..151426Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1510915933:156771..156817TCONS_00068161-exon-scaffold_48-1510915933:156771..156817Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1510915933:155482..155616TCONS_00068161-exon-scaffold_48-1510915933:155482..155616Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1510915933:154816..155067TCONS_00068161-exon-scaffold_48-1510915933:154816..155067Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1510915933:152400..152470TCONS_00068161-exon-scaffold_48-1510915933:152400..152470Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1510915933:152064..152202TCONS_00068161-exon-scaffold_48-1510915933:152064..152202Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1510915933:151876..151945TCONS_00068161-exon-scaffold_48-1510915933:151876..151945Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1510915933:151231..151426TCONS_00068161-exon-scaffold_48-1510915933:151231..151426Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1491911889:156771..156817TCONS_00068161-exon-scaffold_48-1491911889:156771..156817Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1491911889:155482..155616TCONS_00068161-exon-scaffold_48-1491911889:155482..155616Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1491911889:154816..155067TCONS_00068161-exon-scaffold_48-1491911889:154816..155067Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1491911889:152400..152470TCONS_00068161-exon-scaffold_48-1491911889:152400..152470Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1491911889:152064..152202TCONS_00068161-exon-scaffold_48-1491911889:152064..152202Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1491911889:151876..151945TCONS_00068161-exon-scaffold_48-1491911889:151876..151945Clytia hemisphaericaexon
TCONS_00068161-exon-scaffold_48-1491911889:151231..151426TCONS_00068161-exon-scaffold_48-1491911889:151231..151426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:151231..156817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0253051	0.0123382	0	0	0.0444629	0.135046	0	0	0.0419294	0.0207925	0.0128187	0.0589857	0.0116417	0	0.0752568	0.039316	0.966245	0.804899	0.0912031	0.113747	3.15159	2.47449	18.9577	21.3308	14.9682	11.6631	0.0910467	0.0555465	0	0.0286159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068161 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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