TCONS_00068155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068155
Unique NameTCONS_00068155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2638

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068155 ID=TCONS_00068155|Name=TCONS_00068155|organism=Clytia hemisphaerica|type=transcript|length=2638bp
AAAACGTTCTCCTTATACATTTTTGTACTGTATGTTGTTCAAATAAAGTT
TAAAGAGATGTTGTgttgttttgatatgtttaagtTGGATTGCAAGTTTG
CATGAgtgttttaaaataaaaagagcAGGTTGAAAGAGAACATTTTGGTA
TCGAACGTGTTTGACGAAAGCGAGGATGGCTGACATCGTTCCCAAAGGAC
TATCTGATCTTTTAAATCTGAAGATTGTATTGACACCATCTGATCCTTCC
ATCAACACTGGCAAACCTTTACCTGTTCTTGATCTGGATTCGTTGCACAA
ATACAGTCTGCATTGGGTGTCCTCTGATGGTAACAATAATTCGGCTGCTG
CTCCTTCTACATCACTCCCTGGTCAAAGGAACTTAGCAACTAATGCTCCA
CCGACTGGAAGCCCTGCTCAAAGGGGTCTGGCTACAAATATCCCTACAGC
TCAAGCTGCCATCTCTGGTCAGAGGAATCTAGCAAGTAAAAGCCCTTCGG
TTAGCAATCCTGGTCAATCGAATGCCAGTGGAGATATCACTTTGACGGTG
AAAACTCTCACCGGAAAATCAACAATGGTGAAAGTGAAACCTGACAGTCA
AATCTCAGACGTCAAAGATTCGATTCGATCATCTGACGGACTTGGATTAA
CACAAGGCCTTAAACTTTTGCATCTCAACAAAAATTTGAAGGATGAAGCC
ACCCTTAAGGATAGTTTCATTACTGAGAATGCCACACTGTTCATGATCAT
CAGTGCTGAAACTGTTGCCCCTGCTTTTTACATGAACGCCGAAACTTTCC
TTCATCCGAAGTATGATTACCAATACGGTGCAGCTGACAAAACGCAATTC
TCAAGGGGAAATCGACGATTCATTCGACCATGTGGATGGATGAAAAAAGC
ATTGAGAGTGCTTGGAAAGTATGAAAACAACACGTGGCTTGGAGTCGCAG
GGCGCCAATCAGAAACGCAATCCGCCGGTGGTGAATGGCCAGTAGCATAC
CATGGCACTAAGAAAGGAGACGTTGAGAAACTTTGCAGGGAAAGAAGCAG
AAACCCAGTGCACCAGGGCCAAAATTTCACTCCAGGGAAAGGGATCTATA
CAACGTCTTCACCACACTTGGCCGAACAGCAATCAGagagttttgatttt
gaaggaCATAAATACAAAATGATTTTCATGGATCGTGTAGATATGAGTTA
CACAGCAGAGTACAAAGTTCCTAGTGGTGGTCAAGACACTTATTTTATCA
CATCAGAAGAACGAGTTCGACCTTATTGCATTCTTTTCAAGAAAGTATAA
TTCTAAAGGATGACAACCGACCTTGAGTGATCAAAATGTTATTGAAATGA
AGTGGGACTTTGTAATTTTATGATTGAATGGAGGGACTGTTTTTCTAACT
CAAAGGTTCAGAACGGCAGCCTTTAAAGGAAGATCTGTGCATCCTCCTTT
GCGTGACAAGAGCAGACATTTCCTTTACATGTaagcttttgtctcttttt
tctttaaccTAGAGCTGACTCTATAATTTAGAAATTTACAgtttaaattt
ataaaaatgccTTTAAATTCTtgtattaaaaattgttttatcaTTCTTAG
AAAACTTGTATTCGGTTATTGCTGAGGTCTGACACAATGATATATCCATT
CTGTGTGACGGAAACACTCTCAGGGAAGGAGAGTTGACCATCCCCATTCC
CCTCAGAACCAATACACTTAATCATTTTCCCTGAGTAAGTCAACACTTGG
AGTCTATGATTTCCCATGTCAGACACAATAATGTTATTTGCAATATCCAT
AGATAAACCACGCGGGTGATTGAATTGTCCATCTAATTGTCCTTGTACTC
CAAAAAGTTGGATGAATTTCCCACGTTTGTCGAATATTTGAATCCTGTGG
TTTTTCGAATCTGACACTAGAATATGTTCTTTATCCGGGTTGACTGCCAC
ATAACATGGGGAATTAAATTGTCCTGCGCGATCCCCTTGGGAACCAAATT
TCATGATAAATTTTCCCTCGGCACTGAAAATTTGTATTCTGTGATTGTCA
GTATCAGCCACAATAATTTCACGAGACGTTTGGGAGATTGTAATTCCCCA
TGGGGATTTAAAAAGTCCGTTTTTAGTTCCTTCACGACCGAATTTAGCGA
TAAAACTTCCGCGTTTTGAAAACACTTGCACTCGGTTGTTTCCGTTATCA
CAAACAGCAATCCGATTGTTAGGGGAAACTGCGACGTCTGTAGGGCAGTT
GAATTCCCCTTTTCTCTCCCCATGGGACCCGAACATGTTAATAAATTCCC
CTCTTGGTCCGAAGGTTTGAATCCTGTGGTTATAACTATCTGCAACAAAC
ATGAAGCCCTCTGAGTCACTCGCAACACCGAAAGGAGATTTGAATTCTCG
CTTTTTAGACCCGTATTGCCCGAACTTGAATAAAGATAACCCGACTTCAT
TGTATTCTCGTCGATTAGTGACGATGATTGGAAAAGGGCTTCCCCGAATC
GGTTTTTCTTTGATGGTGACTTCCAGCATGTGTTTCCCACTAATATCAGG
TGTGAAGCGGATGGAATACGTGCCATCATCTAAAAGATAAACGAATGATG
ATTAGAGTATCTGCCGTTGTTTGTACGTATGAGAGGTG
Run BLAST on NCBI

protein sequence of Ubiquitin domain containing protein

>TCONS_00068155-protein ID=TCONS_00068155-protein|Name=Ubiquitin domain containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
MADIVPKGLSDLLNLKIVLTPSDPSINTGKPLPVLDLDSLHKYSLHWVSS
DGNNNSAAAPSTSLPGQRNLATNAPPTGSPAQRGLATNIPTAQAAISGQR
NLASKSPSVSNPGQSNASGDITLTVKTLTGKSTMVKVKPDSQISDVKDSI
RSSDGLGLTQGLKLLHLNKNLKDEATLKDSFITENATLFMIISAETVAPA
FYMNAETFLHPKYDYQYGAADKTQFSRGNRRFIRPCGWMKKALRVLGKYE
NNTWLGVAGRQSETQSAGGEWPVAYHGTKKGDVEKLCRERSRNPVHQGQN
FTPGKGIYTTSSPHLAEQQSESFDFEGHKYKMIFMDRVDMSYTAEYKVPS
GGQDTYFITSEERVRPYCILFKKV
Run BLAST on NCBI

transcript from alignment at scaffold_48:136768..139712-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068155 ID=TCONS_00068155|Name=TCONS_00068155|organism=Clytia hemisphaerica|type=transcript|length=2945bp|location=Sequence derived from alignment at scaffold_48:136768..139712- (Clytia hemisphaerica)
AAAACGTTCTCCTTATACATTTTTGTACTGTATGTTGTTCAAATAAAGTT
TAAAGAGATGTTGTGTTGTTTTGATATGTTTAAGTTGGATTGCAAGTTTG
CATGAGTGTTTTAAAATAAAAAGAGCAGGTTGAAAGGTAGGGGTTTTCTT
TCTTTAGATTTTAACTTTCACATCACATCGTGATCTTAAAAAATCTTGAA
ATTTGTTAAGAAAGGTAAAAAACTAAATCGTCTCTATTGGACCTATGAAA
TGTAATTCTCACCAGATCACTGAGACATAGATGGGTGGTTTGACTTTTCT
CTGTTTATGACTTCTATTGTGAAAGCTTGCATTTCACGAACAGCCTCATC
ATTATAGATGAAAGCTACGCTTGGTCAAATGTCCTAGTCCCCTAAGTTTT
CTCATAACCTGTGCCACTTTAATCCACTTTATACAATTTTCAGAGAACAT
TTTGGTATCGAACGTGTTTGACGAAAGCGAGGATGGCTGACATCGTTCCC
AAAGGACTATCTGATCTTTTAAATCTGAAGATTGTATTGACACCATCTGA
TCCTTCCATCAACACTGGCAAACCTTTACCTGTTCTTGATCTGGATTCGT
TGCACAAATACAGTCTGCATTGGGTGTCCTCTGATGGTAACAATAATTCG
GCTGCTGCTCCTTCTACATCACTCCCTGGTCAAAGGAACTTAGCAACTAA
TGCTCCACCGACTGGAAGCCCTGCTCAAAGGGGTCTGGCTACAAATATCC
CTACAGCTCAAGCTGCCATCTCTGGTCAGAGGAATCTAGCAAGTAAAAGC
CCTTCGGTTAGCAATCCTGGTCAATCGAATGCCAGTGGAGATATCACTTT
GACGGTGAAAACTCTCACCGGAAAATCAACAATGGTGAAAGTGAAACCTG
ACAGTCAAATCTCAGACGTCAAAGATTCGATTCGATCATCTGACGGACTT
GGATTAACACAAGGCCTTAAACTTTTGCATCTCAACAAAAATTTGAAGGA
TGAAGCCACCCTTAAGGATAGTTTCATTACTGAGAATGCCACACTGTTCA
TGATCATCAGTGCTGAAACTGTTGCCCCTGCTTTTTACATGAACGCCGAA
ACTTTCCTTCATCCGAAGTATGATTACCAATACGGTGCAGCTGACAAAAC
GCAATTCTCAAGGGGAAATCGACGATTCATTCGACCATGTGGATGGATGA
AAAAAGCATTGAGAGTGCTTGGAAAGTATGAAAACAACACGTGGCTTGGA
GTCGCAGGGCGCCAATCAGAAACGCAATCCGCCGGTGGTGAATGGCCAGT
AGCATACCATGGCACTAAGAAAGGAGACGTTGAGAAACTTTGCAGGGAAA
GAAGCAGAAACCCAGTGCACCAGGGCCAAAATTTCACTCCAGGGAAAGGG
ATCTATACAACGTCTTCACCACACTTGGCCGAACAGCAATCAGAGAGTTT
TGATTTTGAAGGACATAAATACAAAATGATTTTCATGGATCGTGTAGATA
TGAGTTACACAGCAGAGTACAAAGTTCCTAGTGGTGGTCAAGACACTTAT
TTTATCACATCAGAAGAACGAGTTCGACCTTATTGCATTCTTTTCAAGAA
AGTATAATTCTAAAGGATGACAACCGACCTTGAGTGATCAAAATGTTATT
GAAATGAAGTGGGACTTTGTAATTTTATGATTGAATGGAGGGACTGTTTT
TCTAACTCAAAGGTTCAGAACGGCAGCCTTTAAAGGAAGATCTGTGCATC
CTCCTTTGCGTGACAAGAGCAGACATTTCCTTTACATGTAAGCTTTTGTC
TCTTTTTTCTTTAACCTAGAGCTGACTCTATAATTTAGAAATTTACAGTT
TAAATTTATAAAAATGCCTTTAAATTCTTGTATTAAAAATTGTTTTATCA
TTCTTAGAAAACTTGTATTCGGTTATTGCTGAGGTCTGACACAATGATAT
ATCCATTCTGTGTGACGGAAACACTCTCAGGGAAGGAGAGTTGACCATCC
CCATTCCCCTCAGAACCAATACACTTAATCATTTTCCCTGAGTAAGTCAA
CACTTGGAGTCTATGATTTCCCATGTCAGACACAATAATGTTATTTGCAA
TATCCATAGATAAACCACGCGGGTGATTGAATTGTCCATCTAATTGTCCT
TGTACTCCAAAAAGTTGGATGAATTTCCCACGTTTGTCGAATATTTGAAT
CCTGTGGTTTTTCGAATCTGACACTAGAATATGTTCTTTATCCGGGTTGA
CTGCCACATAACATGGGGAATTAAATTGTCCTGCGCGATCCCCTTGGGAA
CCAAATTTCATGATAAATTTTCCCTCGGCACTGAAAATTTGTATTCTGTG
ATTGTCAGTATCAGCCACAATAATTTCACGAGACGTTTGGGAGATTGTAA
TTCCCCATGGGGATTTAAAAAGTCCGTTTTTAGTTCCTTCACGACCGAAT
TTAGCGATAAAACTTCCGCGTTTTGAAAACACTTGCACTCGGTTGTTTCC
GTTATCACAAACAGCAATCCGATTGTTAGGGGAAACTGCGACGTCTGTAG
GGCAGTTGAATTCCCCTTTTCTCTCCCCATGGGACCCGAACATGTTAATA
AATTCCCCTCTTGGTCCGAAGGTTTGAATCCTGTGGTTATAACTATCTGC
AACAAACATGAAGCCCTCTGAGTCACTCGCAACACCGAAAGGAGATTTGA
ATTCTCGCTTTTTAGACCCGTATTGCCCGAACTTGAATAAAGATAACCCG
ACTTCATTGTATTCTCGTCGATTAGTGACGATGATTGGAAAAGGGCTTCC
CCGAATCGGTTTTTCTTTGATGGTGACTTCCAGCATGTGTTTCCCACTAA
TATCAGGTGTGAAGCGGATGGAATACGTGCCATCATCTAAAAGATAAACG
AATGATGATTAGAGTATCTGCCGTTGTTTGTACGTATGAGAGGTG

Coding sequence (CDS) from alignment at scaffold_48:136768..139712-

>TCONS_00068155 ID=TCONS_00068155|Name=TCONS_00068155|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_48:136768..139712- (Clytia hemisphaerica)
ATGGCTGACATCGTTCCCAAAGGACTATCTGATCTTTTAAATCTGAAGAT
TGTATTGACACCATCTGATCCTTCCATCAACACTGGCAAACCTTTACCTG
TTCTTGATCTGGATTCGTTGCACAAATACAGTCTGCATTGGGTGTCCTCT
GATGGTAACAATAATTCGGCTGCTGCTCCTTCTACATCACTCCCTGGTCA
AAGGAACTTAGCAACTAATGCTCCACCGACTGGAAGCCCTGCTCAAAGGG
GTCTGGCTACAAATATCCCTACAGCTCAAGCTGCCATCTCTGGTCAGAGG
AATCTAGCAAGTAAAAGCCCTTCGGTTAGCAATCCTGGTCAATCGAATGC
CAGTGGAGATATCACTTTGACGGTGAAAACTCTCACCGGAAAATCAACAA
TGGTGAAAGTGAAACCTGACAGTCAAATCTCAGACGTCAAAGATTCGATT
CGATCATCTGACGGACTTGGATTAACACAAGGCCTTAAACTTTTGCATCT
CAACAAAAATTTGAAGGATGAAGCCACCCTTAAGGATAGTTTCATTACTG
AGAATGCCACACTGTTCATGATCATCAGTGCTGAAACTGTTGCCCCTGCT
TTTTACATGAACGCCGAAACTTTCCTTCATCCGAAGTATGATTACCAATA
CGGTGCAGCTGACAAAACGCAATTCTCAAGGGGAAATCGACGATTCATTC
GACCATGTGGATGGATGAAAAAAGCATTGAGAGTGCTTGGAAAGTATGAA
AACAACACGTGGCTTGGAGTCGCAGGGCGCCAATCAGAAACGCAATCCGC
CGGTGGTGAATGGCCAGTAGCATACCATGGCACTAAGAAAGGAGACGTTG
AGAAACTTTGCAGGGAAAGAAGCAGAAACCCAGTGCACCAGGGCCAAAAT
TTCACTCCAGGGAAAGGGATCTATACAACGTCTTCACCACACTTGGCCGA
ACAGCAATCAGAGAGTTTTGATTTTGAAGGACATAAATACAAAATGATTT
TCATGGATCGTGTAGATATGAGTTACACAGCAGAGTACAAAGTTCCTAGT
GGTGGTCAAGACACTTATTTTATCACATCAGAAGAACGAGTTCGACCTTA
TTGCATTCTTTTCAAGAAAGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042541XLOC_042541Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Ubiquitin domain containing proteinTCONS_00068155-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068155-exon-scaffold_48-1575043694:139577..139712TCONS_00068155-exon-scaffold_48-1575043694:139577..139712Clytia hemisphaericaexon
TCONS_00068155-exon-scaffold_48-1575043694:136768..139269TCONS_00068155-exon-scaffold_48-1575043694:136768..139269Clytia hemisphaericaexon
TCONS_00068155-exon-scaffold_48-1510915933:139577..139712TCONS_00068155-exon-scaffold_48-1510915933:139577..139712Clytia hemisphaericaexon
TCONS_00068155-exon-scaffold_48-1510915933:136768..139269TCONS_00068155-exon-scaffold_48-1510915933:136768..139269Clytia hemisphaericaexon
TCONS_00068155-exon-scaffold_48-1491911889:139577..139712TCONS_00068155-exon-scaffold_48-1491911889:139577..139712Clytia hemisphaericaexon
TCONS_00068155-exon-scaffold_48-1491911889:136768..139269TCONS_00068155-exon-scaffold_48-1491911889:136768..139269Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:136768..139712 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.7239	8.05674	8.92545	8.70075	7.60892	5.72248	0	0	4.64826	13.1464	1.18984	1.61257	13.1072	15.374	18.1269	13.4166	6.0124	6.2627	26.3258	22.2975	4.98136	4.15438	15.1922	16.0141	23.4191	20.9087	20.0153	27.9515	8.39747	7.41607
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00068155 vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 1.512e-71
Identity = 128/326 (39.26%), Postives = 198/326 (60.74%), Query Frame = -2 
Query: 1600 DGTYSIRFTPDISGKHMLEVTIKEKPIRGSPFPIIVTNRREYNEVGLSLFKFGQYGSKKREFKSPFGVASDSEGFMFVADSYNHRIQTFGPRGEFINMFGSHGERKGEFNCPTDVAVSPNNRIAVCDNGNNRVQVFSKRGSFIAKFGREGTKNGLFKSPWGITISQTSREIIVADTDNHRIQIFSAEGKFIMKFGSQGDRAGQFNSPCYVAVNPDKEHILVSDSKNHRIQIFDKRGKFIQLFGVQGQLDGQFNHPRGLSMDIANNIIVSDMGNHRLQVLTYSGKMIKCIGSEGNGDGQLSFPESVSVTQNGYIIVSDLSNNRIQVF 2577
            +GTY + + P + G+H++ VT+  + I  SPF ++V + R Y  +GL    FG  G    +   P+GV+ D EG++ VAD  N+RIQ F P G F + FG+ G R G+F+ P  VA   + RI V D  N+R+Q+F+  G F+ KFG +GTKNG F  PW + ++   + I+V+DT NHRIQ+F  +G F+ K+G +G     F+SP  VA N  + H++V+D  NHR+ +     +  +  G +G  +GQF  P+G+++D    IIV+D  NHR+Q+   +G  +   G++G+G GQ+  P  +++T +G I+V D  NNRI VF
Sbjct:  545 NGTYVVSYRPQLEGEHLVSVTLCNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDSDGKLCRPWGVSVDKEGYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGK-ILVSDTRNHRIQLFGPDGVFLNKYGFEGALWKHFDSPRGVAFN-HEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESNGSFLCKFGAQGSGFGQMDRPSGIAITPDGMIVVVDFGNNRILVF 868
The following BLAST results are available for this feature:
BLAST of TCONS_00068155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN411.512e-7139.26E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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