TCONS_00068147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068147
Unique NameTCONS_00068147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068147 ID=TCONS_00068147|Name=TCONS_00068147|organism=Clytia hemisphaerica|type=transcript|length=3483bp
ATTTTACTGTACATAGGAATTTTAGATTTCAGTTGCACTTTTTCCCTACA
AATGCATGAAAACATTACCAAGAAAGTCTTTTGTACATGAGGATTCTCTG
TATGGCCAGATACTTCCGTAGGTTAACGCTCATATCAGAATTATTCCTTA
ATAATACTTCCATGCATTTGTagatccaaaaatattttcataaaataaca
ATATGCTATCATGAAGGGAAGGTTTGAATTAACTCCAattcttcaaaaac
ttttttgagtaattttgatTATAGAGGTTAGAAGTATTTGGTGTGAAGTT
TCAGAAGATTACCTCATTTTACAAGTATAGTATATTCAAGTATATATCCC
CTCTAATAAAAGTGGCATTGATGAGATTATTGTTTGCTATTAATTGACGT
CTtatatttcatcaaaatcttaaCTCAATTAATGACCTTAATAATAAAGG
CCAAGTAATATATCTGAATACAACAAGGCCGAACCCCCTTGAGGGGGCAA
AAAAGGTTGGGCTAGAACTGGTACCTGCTTTTAGCCTGTAGAGTGACACT
TAGTATTTGCAAATCAGGGGTTACTTAAATCTTAGAGTAAAGGTCACCTA
ATTCTTAAGGCGAGCCTAAGACCTACATCCATGACTGGTACAAACTCAAT
TACCTGATAGCAGAGACTCTAGGTTAGTTGAGGAGTTTTAAGCTTGCAGT
AAGAGTGAGTGAGAATAGAATACTTGTTTCAAGATGCCTAGTTGAAACGA
TTCAACAAAGTAACCAATACTGTTAATTTACTTTACCTCTATTTGAGAGT
TCAGAATTGCAAGAAATCATGTTTTAAGAACTTTGAAATGAACTTTTCCA
GATTCCAGATAATATACATATTAAAGATTTTGTGGCTTGTattaataaaa
catttttaataaatCTTAAAAAGGAATTTAGAATTGCTAATAATTCTAAT
GATGAAACAAGACTACCTTGTGAAAAATTTCTTGCTTTCAGCATGGATGT
GTTAACATGTCTCTCAATTTTCAaccttaaaaaattaaaaaaattaaatg
tccAATATGATATGCAGAGAATCATAGAAGTGATTGATTCTTAAAAGCCA
AACCATTAAATTTCTTTTGCAATTTAAAGAAAAAGCTTCTGAATTAAGGA
GATGGACACCATAGACACCATAGACACCATAACAGGTGCAATGCATTGCA
GTCGTTCAAAAACGAcattgataaaataaaatgaatttagATTTGGTACA
GATTTATTGGATGCAAGTCAGAGAATTCCCAGAGGGCAGAGATGcaagaa
ttatttcattttccATAATGGGGAATAAAGTCACTTTTATACATCATTAT
ACTACAGTACTAATTCAAGATTCAATAAAACAAGCTGGATGCtgtttgga
cctacctgatgatgaaagtttgATAATAAGGCAAAAAATAACAATAGTca
tagtcagaaaatatagcgttagtgaaaatgcataacgcattaaatcTCAT
CAtcgattgttgatgggggagcTGGAAAGGGGTaaggaaaaagaaaacgt
gGGTAACAAACGGTcatattttaggcattgctaatttGTATCTCATGGCT
TTTTTGGAAATCGAGCTCTGTCACATTATAGAAATTACAATTTTGCATTa
gggtgcaaaatttcattttaattttatttttacgcAAAAAAACTTTCTCT
AATACAGCTACCATTTTTCAGGAGGACTCCATGACTACCATAAAAACCAC
ACTCAACAATCGATCATTAATCATCACAGGAGTATATCTCCAATCTGTTA
ACTCAAAATCTGACTGTAAAGAGACTTACAAAAACCAACTTTCTTCAATA
ACGGGTATTTTGAATCAATTCTCTGCAACTTCCGAATGTATTATCCTTGG
AGATTTCCAGTCGTGTCCCAGTGAACCCATCACACAAAGATCTACTAGCC
CCAATGCTCTATCGGNATGTTATAatgtttattgttgtttattcatTATG
ACACATTGTAAACTTCCTTTTACTGTACATAGTATTTTCATTTCATGTCC
TTTCGAGCTCGAAAGCCCCTAGGGTTATTTTTCGTTTAGGagatttttaa
atgtacatagacctgaaaaagaaatatatcattattattatcgTGTCCCA
GTGAACCCATCACACAAAGATCTACTAGCCCCAATGCTCTATCGGACTAT
TTATCAGAATTCATTACTGAAAACTACCTTGCGCCGATCGATCTCACTCA
TGGACATGGTCCTGCTTATACGTATCATCATGCATCTCTCCCACACAAAT
CCTATATAGATCATTTTCTAATATCTCAATCGCtgtttgatttatttatt
gacACTCATGTTACAGAACCAAATGCAATCAACACAGGAGACCACCTTGC
AATCAAACTAACCATGAACTTTCCATCAAAACCATctcaaaacaatgaaa
tataaATACAGAAACGCTAATTAATGATTTCATACCAAACCACATATGGA
AGAACAGTGAATtcataaaattatataaagaaAAGGTAGCAGAGAAAATT
GCTAACAACACAAGTGACTCTGATATTGAATCAATGATAAACAACCTCAA
CGACATACTGCACTCATCTGCATCTGAGTGTTATACAACTTTCAAGAAGG
ACTTTTATGAATTTCCAGCCAAGAATTGGTGGAATGATGAGTTAACAAAA
GCCAAAAGGAACTTACAACTGTGTTTCAACCTTTGGCGTGACAATCAATT
CCCAAAATCTGAATCTGAAGTATCATACAACCGGTataaattttccagaa
aaatttttcgaaCATTAGTTAAACGTGCAAAGCACCAAGTCACAGTAGAA
CACTATGTCAATgttgaaaagctgaaaaatgtgAACCAATCCTCTTACTG
GACAAAAGTTAATCTTCtcaataagaaaaaaacaacataaactATTTACA
GTGAACGGCAAATCCACCAAAAGTGACATATCAAATGAATTTGGAGAACA
CTTTGATAGACTCCTAAACACACCAAGAATTGACACAATCGACAATAACC
AATCGAATGAAGAACTTAAAAACCTATTACACGAACTACAAACAGACATA
GATTCAAGTGATCTTTACATATCTCAACATGAAATTATCTCAGTCATCAA
TAAACTACAACTTGGAAAGTCACGTGACCCTTTTCAACTGCTATCAGAAC
ATTATAAATATGCAACAAGCGATATATTTAATGACTATCTAACCAAACTT
ATCAATAGAATATTTCACTCGAAACACATCCCTTCATCACTGAGCACCTC
AATAATAATACCACTCGTGAAATCACATAAGAAATCTTTAAAAGGGGATC
TAATGTCAGAAAATTCATGTacttcatttttttacataggaAAGTTCTga
tagaaacaaaaatattgaaaaaagaacgaacttaaaatcttttaaattca
tTAAGTTATTGATACTTGAATTTTCcctttctt
Run BLAST on NCBI

transcript from alignment at scaffold_48:94727..99407-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068147 ID=TCONS_00068147|Name=TCONS_00068147|organism=Clytia hemisphaerica|type=transcript|length=4681bp|location=Sequence derived from alignment at scaffold_48:94727..99407- (Clytia hemisphaerica)
ATTTTACTGTACATAGGAATTTTAGATTTCAGTTGCACTTTTTCCCTACA
AATGCATGAAAACATTACCAAGAAAGTCTTTTGCACATGAGGATTCTCTG
TATGGCCAGATACTTCCGTAGGTTAACGCTCATATCAGAATTATTACTCA
GCAATAATGCCATGCATTTGTAGATTAAAATTGTTCGTTTTAAGAAAAAA
TGACATGACCCATGGTTAATTTATTAATGGTTATTTGGCTGAAAGTACAG
CTACTTAAGGAAGTTACCATCCCCATTAGAACCATGGGCTGGGTCTTCTA
CAGTAAACAAGTAATATGCAGAAAGAGACCATGACAAGAAACATTCTATG
AAAACCATGTATACACAGAACTGGGTTGAACCAAGCACTAATTGAGGCTA
CAGGTAATCAAACCAACATCCCAGGAAATGAAAAGAGAATCATTTCTCAG
ACACAACTAATAACTCAAGCCGGAGAGATCAATCAAATAATTGATTAATA
AGTGAACAAGTCTACAAAACTCAAACAATAAGATTCAATATCTTAAAGTT
GACACTTGTTTAGCAATCAAAGTTTGAGATCATAGCAAAAGTTTTCATTT
TCATCCGCCTAGCAAAGCTGGGTTGTATGGATTATCCTGTATTCAAAAAA
GCTCAAAAAAGAACATCCCTGACTATTGAATTAACAGCACAATGATTTAA
GAATTTTCAAGCCGTATAGATCAAATCTGTCTACCCGAGGCTTGTTTACT
TTTGCAGAATTGCAGAACACCCAAAAGCTCAAATTTTTGAGAAAAATCCT
TAATACTCAAAATAAAATCAAGAGCAAGAGGTCCTTTTTTATGAAAGTGA
GTCAAAATAATAAAGGTTATGCAAGATATTATAAGTGCATTTTAAGCATT
TGGATGAGACTTTGTCCAAATAAATGGTTTATTATCCGTTCATCGCTAAA
ATATTTGTCGTTTTCAAGCATAATTCCAATTTATAAGACCGTAAATCTGG
TTTCTTGGTAGCTTTTTATTCAAAAGTCTTATTTTTATTTTGTGACGTAA
CGTCAAAAAGAAGATGCTCAATTGTCATTGAACTCATTGTGTGACGTCAG
TTTATGAAATATGTAGCCTCCATGGTAGCTATATATTCGAAAATATTGGA
CAGCAAAGAAGCCAATCAAATGTTGCTATTTCTTACTAGCAAAGTTATTT
GTCCATTTCTGAATGGCAATTGAAAAAGGATAACACTTTCCATCTATAAA
TGCACGAAAACATTACCAAGAAAGTCTTTTGTACATGAGGATTCTCTGTA
TGGCCAGATACTTCCGTAGGTTAACGCTCATATCAGAATTATTCCTTAAT
AATACTTCCATGCATTTGTAGATCCAAAAATATTTTCATAAAATAACAAT
ATGCTATCATGAAGGGAAGGTTTGAATTAACTCCAATTCTTCAAAAACTT
TTTTGAGTAATTTTGATTATAGAGGTTAGAAGTATTTGGTGTGAAGTTTC
AGAAGATTACCTCATTTTACAAGTATAGTATATTCAAGTATATATCCCCT
CTAATAAAAGTGGCATTGATGAGATTATTGTTTGCTATTAATTGACGTCT
TATATTTCATCAAAATCTTAACTCAATTAATGACCTTAATAATAAAGGCC
AAGTAATATATCTGAATACAACAAGGCCGAACCCCCTTGAGGGGGCAAAA
AAGGTTGGGCTAGAACTGGTACCTGCTTTTAGCCTGTAGAGTGACACTTA
GTATTTGCAAATCAGGGGTTACTTAAATCTTAGAGTAAAGGTCACCTAAT
TCTTAAGGCGAGCCTAAGACCTACATCCATGACTGGTACAAACTCAATTA
CCTGATAGCAGAGACTCTAGGTTAGTTGAGGAGTTTTAAGCTTGCAGTAA
GAGTGAGTGAGAATAGAATACTTGTTTCAAGATGCCTAGTTGAAACGATT
CAACAAAGTAACCAATACTGTTAATTTACTTTACCTCTATTTGAGAGTTC
AGAATTGCAAGAAATCATGTTTTAAGAACTTTGAAATGAACTTTTCCAGA
TTCCAGATAATATACATATTAAAGATTTTGTGGCTTGTATTAATAAAACA
TTTTTAATAAATCTTAAAAAGGAATTTAGAATTGCTAATAATTCTAATGA
TGAAACAAGACTACCTTGTGAAAAATTTCTTGCTTTCAGCATGGATGTGT
TAACATGTCTCTCAATTTTCAACCTTAAAAAATTAAAAAAATTAAATGTC
CAATATGATATGCAGAGAATCATAGAAGTGATTGATTCTTAAAAGCCAAA
CCATTAAATTTCTTTTGCAATTTAAAGAAAAAGCTTCTGAATTAAGGAGA
TGGACACCATAGACACCATAGACACCATAACAGGTGCAATGCATTGCAGT
CGTTCAAAAACGACATTGATAAAATAAAATGAATTTAGATTTGGTACAGA
TTTATTGGATGCAAGTCAGAGAATTCCCAGAGGGCAGAGATGCAAGAATT
ATTTCATTTTCCATAATGGGGAATAAAGTCACTTTTATACATCATTATAC
TACAGTACTAATTCAAGATTCAATAAAACAAGCTGGATGCTGTTTGGACC
TACCTGATGATGAAAGTTTGATAATAAGGCAAAAAATAACAATAGTCATA
GTCAGAAAATATAGCGTTAGTGAAAATGCATAACGCATTAAATCTCATCA
TCGATTGTTGATGGGGGAGCTGGAAAGGGGTAAGGAAAAAGAAAACGTGG
GTAACAAACGGTCATATTTTAGGCATTGCTAATTTGTATCTCATGGCTTT
TTTGGAAATCGAGCTCTGTCACATTATAGAAATTACAATTTTGCATTAGG
GTGCAAAATTTCATTTTAATTTTATTTTTACGCAAAAAAACTTTCTCTAA
TACAGCTACCATTTTTCAGGAGGACTCCATGACTACCATAAAAACCACAC
TCAACAATCGATCATTAATCATCACAGGAGTATATCTCCAATCTGTTAAC
TCAAAATCTGACTGTAAAGAGACTTACAAAAACCAACTTTCTTCAATAAC
GGGTATTTTGAATCAATTCTCTGCAACTTCCGAATGTATTATCCTTGGAG
ATTTCCAGTCGTGTCCCAGTGAACCCATCACACAAAGATCTACTAGCCCC
AATGCTCTATCGGNATGTTATAATGTTTATTGTTGTTTATTCATTATGAC
ACATTGTAAACTTCCTTTTACTGTACATAGTATTTTCATTTCATGTCCTT
TCGAGCTCGAAAGCCCCTAGGGTTATTTTTCGTTTAGGAGATTTTTAAAT
GTACATAGACCTGAAAAAGAAATATATCATTATTATTATCGTGTCCCAGT
GAACCCATCACACAAAGATCTACTAGCCCCAATGCTCTATCGGACTATTT
ATCAGAATTCATTACTGAAAACTACCTTGCGCCGATCGATCTCACTCATG
GACATGGTCCTGCTTATACGTATCATCATGCATCTCTCCCACACAAATCC
TATATAGATCATTTTCTAATATCTCAATCGCTGTTTGATTTATTTATTGA
CACTCATGTTACAGAACCAAATGCAATCAACACAGGAGACCACCTTGCAA
TCAAACTAACCATGAACTTTCCATCAAAACCATCTCAAAACAATGAAATA
TAAATACAGAAACGCTAATTAATGATTTCATACCAAACCACATATGGAAG
AACAGTGAATTCATAAAATTATATAAAGAAAAGGTAGCAGAGAAAATTGC
TAACAACACAAGTGACTCTGATATTGAATCAATGATAAACAACCTCAACG
ACATACTGCACTCATCTGCATCTGAGTGTTATACAACTTTCAAGAAGGAC
TTTTATGAATTTCCAGCCAAGAATTGGTGGAATGATGAGTTAACAAAAGC
CAAAAGGAACTTACAACTGTGTTTCAACCTTTGGCGTGACAATCAATTCC
CAAAATCTGAATCTGAAGTATCATACAACCGGTATAAATTTTCCAGAAAA
ATTTTTCGAACATTAGTTAAACGTGCAAAGCACCAAGTCACAGTAGAACA
CTATGTCAATGTTGAAAAGCTGAAAAATGTGAACCAATCCTCTTACTGGA
CAAAAGTTAATCTTCTCAATAAGAAAAAAACAACATAAACTATTTACAGT
GAACGGCAAATCCACCAAAAGTGACATATCAAATGAATTTGGAGAACACT
TTGATAGACTCCTAAACACACCAAGAATTGACACAATCGACAATAACCAA
TCGAATGAAGAACTTAAAAACCTATTACACGAACTACAAACAGACATAGA
TTCAAGTGATCTTTACATATCTCAACATGAAATTATCTCAGTCATCAATA
AACTACAACTTGGAAAGTCACGTGACCCTTTTCAACTGCTATCAGAACAT
TATAAATATGCAACAAGCGATATATTTAATGACTATCTAACCAAACTTAT
CAATAGAATATTTCACTCGAAACACATCCCTTCATCACTGAGCACCTCAA
TAATAATACCACTCGTGAAATCACATAAGAAATCTTTAAAAGGGGATCTA
ATGTCAGAAAATTCATGTACTTCATTTTTTTACATAGGAAAGTTCTGATA
GAAACAAAAATATTGAAAAAAGAACGAACTTAAAATCTTTTAAATTCATT
AAGTTATTGATACTTGAATTTTCCCTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042538XLOC_042538Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068147-exon-scaffold_48-1575043694:99345..99407TCONS_00068147-exon-scaffold_48-1575043694:99345..99407Clytia hemisphaericaexon
TCONS_00068147-exon-scaffold_48-1575043694:94727..98146TCONS_00068147-exon-scaffold_48-1575043694:94727..98146Clytia hemisphaericaexon
TCONS_00068147-exon-scaffold_48-1510915933:99345..99407TCONS_00068147-exon-scaffold_48-1510915933:99345..99407Clytia hemisphaericaexon
TCONS_00068147-exon-scaffold_48-1510915933:94727..98146TCONS_00068147-exon-scaffold_48-1510915933:94727..98146Clytia hemisphaericaexon
TCONS_00068147-exon-scaffold_48-1491911889:99345..99407TCONS_00068147-exon-scaffold_48-1491911889:99345..99407Clytia hemisphaericaexon
TCONS_00068147-exon-scaffold_48-1491911889:94727..98146TCONS_00068147-exon-scaffold_48-1491911889:94727..98146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:94727..99407 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.963274	0.607508	0.455782	0.23869	0.757619	0.700405	0.450549	0.296634	0.10026	0.118131	0.213594	0.272397	0.0815111	0.100213	0.470095	0.637306	0.227607	0.369796	0.091369	0.184962	0.381996	0.321022	0.262375	0.768985	0.327348	1.25881	0.6302	0.255774	0.327774	0.280169
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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