TCONS_00068139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068139
Unique NameTCONS_00068139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068139 ID=TCONS_00068139|Name=TCONS_00068139|organism=Clytia hemisphaerica|type=transcript|length=1650bp
gtTTGGTAGAGCAATCAAGATAAACTCGAAACTCCTTTCGTGAAACTGTg
ctattttttgaacattttttaacattttcaaaagcgTGCTTTAACCTTAA
AATGACATAACTCAATGAATAAtgattcaaattgaaaaaaggaCCCACCA
AAGTTTTAGTACTACATTAACATAAAAAAGATTGACCTACACAAAGAGAA
GATCAGGTCACACATGGAGGCAGAATTTGTTAAGGTATCAAATTAGTGGA
TTTATTAAATCGTCTTTGAACctagatttcaattttgaggTTATGGAGGA
TTTGGAATCGGTTAACGGTTACTTCTGAAATAAAACGCACTGTTCAATTT
TTCTACTAGGTGTTACCTTCCATCGAGATGGACTACGATTATATAGAAGT
TAATGGTGGTTGGTTCTTCAAATTCTCAACAAAGGGCTTTGTACAGGTGC
CAGTCCATGAAGAGGAGTTTGGGAAAATCGCCCGAGGTGCTATAAAAACT
TTGATTCTAACGATGAGTTTGATGGTGGCTGCTCTGCAACGTCCGTGGAA
AACAGTTTTCCAGAACTGAGGGAGCGTGTCAACTTTTTGAACAAGTTCTA
CCAGTGCTTATTGTGCTTCCAGTTCCCACACAAAGTACCACGAATCGTAA
CGAGTGATAGCAATAACTCCGGAAAAACATCATGGGCCAACGTTCTTATT
GGGCTTATTCCACACAACAACGTTGCCATACTTAGCAACGAGAAGACTTG
GTTCCATGATGATAAACAAAAGAACAGAACTTTTTTTCATTGACGAGTGG
GTCTATGAAACAATGGCTCCTGACCAGGTCAAATCTATTCTACAAGGTGG
TTACTTCAGCCAAGCGGTGAGAAACCAAAAGCCAAGAAGAACAAAGATGA
ATGGTGGCATCTACATCACCTGCCAGGCTATGCCAAAATTTGATTTCATC
GACGTAGGTGCCGTGGACTGTCGTGTCCAAGAATTCACAGCACGAAAGCT
GGAAACAAAGGACATGACGGCACCAGCATGGATGCTGGAACACTCTTTTG
AGTGTTCGATGTGGCTGGTAAACATGATGGTGATCCATAGAGACCTCATA
ACGCCTGAAGAACGACGAGCGACCCCATGACGTCAGTGCGGGCGCTAGAC
TGAATATAGACATGACGGAAGAAAAAGCAAGGCAATTGATAGAGTGCACC
GGGTCTACGGACGAGGAAGATGGTGAAATTGAAACAGGCTACCATGTTCA
AATGTTCAGTCCATTGGGGACCTTGTCCATTGAAACTTCACCAGCGACAA
CACCATCTTCACAAGAAACAGCATCACCGTTCTTTACAGGTCAAGAAGAT
GTGCTGACGTTGCGAGCACAGTATTCGCCTTCAGTCCACCGCGCGCCCCT
TTGACGCCAATGATACCGGTGACGCCGATCCCAACAATACCAGATTCCTT
ATGGGATGATGATGAGTACTATTCTTGTGATGAGAACAGAGATTCCAGGC
TTGGAAATGGCGAGGAAAATGACAGTGACGGTAAGATTGTTTtcaatttg
ctttatttcttggCTATTTAATCTGACAAGGCGCACCATTCTATGTCATT
TTCCCACATGAAAGTCTCAACttgaaatctaatttttttattcttccttG
Run BLAST on NCBI

protein sequence of TCONS_00068139-protein

>TCONS_00068139-protein ID=TCONS_00068139-protein|Name=TCONS_00068139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MMINKRTELFFIDEWVYETMAPDQVKSILQGGYFSQAVRNQKPRRTKMNG
GIYITCQAMPKFDFIDVGAVDCRVQEFTARKLETKDMTAPAWMLEHSFEC
SMWLVNMMVIHRDLITPEERRATP
Run BLAST on NCBI

transcript from alignment at scaffold_48:473961..476553+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068139 ID=TCONS_00068139|Name=TCONS_00068139|organism=Clytia hemisphaerica|type=transcript|length=2593bp|location=Sequence derived from alignment at scaffold_48:473961..476553+ (Clytia hemisphaerica)
gtTTGGTAGAGCAATCAAGATAAACTCGAAACTCCTTTCGTGAAACTGTg
ctattttttgaacattttttaacattttcaaaagcgTGCTTTAACCTTAA
AATGACATAACTCAATGAATAAtgattcaaattgaaaaaaggaCCCACCA
AAGTTTTAGTACTACATTAACATAAAAAAGATTGACCTACACAAAGAGAA
GATCAGGTCACACATGGAGGCAGAATTTGTTAAGGTATCAAATTAGTGGA
TTTATTAAATCGTCTTTGAACctagatttcaattttgaggTTATGGAGGA
TTTGGAATCGGTTAACGGTTACTTCTGAAATAAAACGCACTGTTCAATTT
TTCTACTAGGTGTTACCTTCCATCGAGATGGACTACGATTATATAGAAGT
TAATGGTGGTTGGTTCTTCAAATTCTCAACAAAGGGCTTTGTACAGGTGC
CAGTCCATGAAGAGGAGTTTGGGAAAATCGCCCGAGGTGCTATAAAAACT
TTGATTCTAACGATGAGTTTGATGGTGGCTGCTCTGCAACGTCCGTGGAA
AACAGTTTTCCAGAACTGAGGGAGCGTGTCAACTTTTTGAACAAGTTCTA
CCAGTGCTTATTGTGCTTCCAGTTCCCACACAAAGTACCACGAATCGTAA
CGAGTGGTAAGAATATGTTTACTATTGGGCGGTGTGAGTTGTGCCAACTT
TCTAACTTTCTGAGGATAAACTGTATTTTATTCAGGTATTTTTGATTCTG
GGAAAATATTCGAGAGGGTATGATGTAATTTTGCATGTTTTGTTTATTCA
TAGTGTTTCGACTACAGTTCTCAGAATTgtttttcttacttttcttCAGA
TAGCAATAACTCCGGAAAAACATCATGGGCCAACGTTCTTATTGGGCTTA
TTCCACACAACAACGTTGCCATACTTAGCAACGAGAAGACTTGGTTCCAT
GATGATAAACAAAAGAACAGAACTTTTTTTCATTGACGAGTGGGTCTATG
AAACAATGGCTCCTGACCAGGTTAGTGTAAATTCTTTACATTGACTGACT
GAATACTAATTATTTCATATCTTGCAGCTTATTTCTGTTTAAGTTTTGAT
ATTAGATGTGCTGAGGAGACCAAAGTATCTAGCAAAATCTGTCATTGTAT
GATAACGATTATGGAATTTAGTTATCTTTAACTTATTTTACAGGTCAAAT
CTATTCTACAAGGTGGTTACTTCAGCCAAGCGGTGAGAAACCAAAAGCCA
AGAAGAACAAAGATGAATGGTGGCATCTACATCACCTGCCAGGCTATGCC
AAAATTTGATTTCATCGACGTAGGTGCCGTGGACTGTCGTGTCCAAGAAT
TCACAGCACGAAAGCTGGAAACAAAGGACATGACGGCACCAGCATGGATG
CTGGAACACTCTTTTGAGTGTTCGATGTGGCTGGTAAACATGATGGTGAT
CCATAGAGACCTCATAACGCCTGAAGAACGACGAGCGACCCCATGACGTC
AGTGCGGGCGCTAGACTGAATATAGACATGACGGAAGAAAAAGCAAGGCA
ATTGATAGAGTGCACCGGGTCTACGGACGAGGAAGATGGTGAAATTGAAA
CAGGTAAACTTTCTGCTTTCANAGTGCACCGGGTCTACGGACGAGGAAGA
TAGTGAAATTGAAACAGGTAAACTTTCTGCTTTCAGACGTATGGACTGTC
GAAGTGCTCGTtactctttttttaattttgaccaaattaagAGGAAGAGG
GAGTCAGAAGTAAGGGTATAGGTTTGATACTGTCAAAACTAAAAACCATT
TCAAATTATCTTCTTCTCTCTTTTAAGGCTACCATGTTCAAATGTTCAGT
CCATTGGGGACCTTGTCCATTGAAACTTCACCAGCGACAACACCATCTTC
ACAAGAAACAGCATCACCGTTCTTTACAGGTGAGAGCTTTACATGTTGCC
TTATTGATCAATTGGACGACTGGTactttctttgatggtgtttgTCTTTG
TGTAACCTTTTCGATAAGATTCAACTCACATTTTCTATTCATTTGACTGG
AATTCTTTCTATTTTGCACCAAATTGAGACACCTAGTTTAAATGCAATAT
TTTAATGAATGTGatgcaattttttaatgaatgtgatgcaatttttttca
tctcaaAGGTCAAGAAGATGTGCTGACGTTGCGAGCACAGTATTCGCCTT
CAGTCCACCGCGCGCCCCTTTGACGCCAATGATACCGGTGACGCCGATCC
CAACAATACCAGATTCCTTATGGGATGGTAAGACTACTTTTACGTCCTAT
CTGAAATCTCTATTATTTGATTCTATGATGATCTTTTTTTCTAGCTTGTA
TTATGTCAATACGTACATTGTCATTATATTGCATCTCATTTTACATTTCA
GATGATGAGTACTATTCTTGTGATGAGAACAGAGATTCCAGGCTTGGAAA
TGGCGAGGAAAATGACAGTGACGGTAAGATTGTTTtcaatttgctttatt
tcttggCTATTTAATCTGACAAGGCGCACCATTCTATGTCATTTTCCCAC
ATGAAAGTCTCAACttgaaatctaatttttttattcttccttG

Coding sequence (CDS) from alignment at scaffold_48:473961..476553+

>TCONS_00068139 ID=TCONS_00068139|Name=TCONS_00068139|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_48:473961..476553+ (Clytia hemisphaerica)
ATGATGATAAACAAAAGAACAGAACTTTTTTTCATTGACGAGTGGGTCTA
TGAAACAATGGCTCCTGACCAGGTCAAATCTATTCTACAAGGTGGTTACT
TCAGCCAAGCGGTGAGAAACCAAAAGCCAAGAAGAACAAAGATGAATGGT
GGCATCTACATCACCTGCCAGGCTATGCCAAAATTTGATTTCATCGACGT
AGGTGCCGTGGACTGTCGTGTCCAAGAATTCACAGCACGAAAGCTGGAAA
CAAAGGACATGACGGCACCAGCATGGATGCTGGAACACTCTTTTGAGTGT
TCGATGTGGCTGGTAAACATGATGGTGATCCATAGAGACCTCATAACGCC
TGAAGAACGACGAGCGACCCCATGAATGATGATAAACAAAAGAACAGAAC
TTTTTTTCATTGACGAGTGGGTCTATGAAACAATGGCTCCTGACCAGGTC
AAATCTATTCTACAAGGTGGTTACTTCAGCCAAGCGGTGAGAAACCAAAA
GCCAAGAAGAACAAAGATGAATGGTGGCATCTACATCACCTGCCAGGCTA
TGCCAAAATTTGATTTCATCGACGTAGGTGCCGTGGACTGTCGTGTCCAA
GAATTCACAGCACGAAAGCTGGAAACAAAGGACATGACGGCACCAGCATG
GATGCTGGAACACTCTTTTGAGTGTTCGATGTGGCTGGTAAACATGATGG
TGATCCATAGAGACCTCATAACGCCTGAAGAACGACGAGCGACCCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042533XLOC_042533Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068139-proteinTCONS_00068139-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068139-exon-scaffold_48-1491911889:473961..474616TCONS_00068139-exon-scaffold_48-1491911889:473961..474616Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1510915933:473961..474616TCONS_00068139-exon-scaffold_48-1510915933:473961..474616Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1575043694:473961..474616TCONS_00068139-exon-scaffold_48-1575043694:473961..474616Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1491911889:474810..474980TCONS_00068139-exon-scaffold_48-1491911889:474810..474980Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1510915933:474810..474980TCONS_00068139-exon-scaffold_48-1510915933:474810..474980Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1575043694:474810..474980TCONS_00068139-exon-scaffold_48-1575043694:474810..474980Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1491911889:475154..475563TCONS_00068139-exon-scaffold_48-1491911889:475154..475563Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1510915933:475154..475563TCONS_00068139-exon-scaffold_48-1510915933:475154..475563Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1575043694:475154..475563TCONS_00068139-exon-scaffold_48-1575043694:475154..475563Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1491911889:475788..475889TCONS_00068139-exon-scaffold_48-1491911889:475788..475889Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1510915933:475788..475889TCONS_00068139-exon-scaffold_48-1510915933:475788..475889Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1575043694:475788..475889TCONS_00068139-exon-scaffold_48-1575043694:475788..475889Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1491911889:476119..476237TCONS_00068139-exon-scaffold_48-1491911889:476119..476237Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1510915933:476119..476237TCONS_00068139-exon-scaffold_48-1510915933:476119..476237Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1575043694:476119..476237TCONS_00068139-exon-scaffold_48-1575043694:476119..476237Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1491911889:476362..476553TCONS_00068139-exon-scaffold_48-1491911889:476362..476553Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1510915933:476362..476553TCONS_00068139-exon-scaffold_48-1510915933:476362..476553Clytia hemisphaericaexon
TCONS_00068139-exon-scaffold_48-1575043694:476362..476553TCONS_00068139-exon-scaffold_48-1575043694:476362..476553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:473961..476553 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165812	0.319607	0.0773377	0.0545452	0.239886	0.0854972	0.200144	0.158476	0.105782	0.0917943	0.161711	0.335931	0.48514	0.137527	0.0442514	0.0640457	0.0377233	0.0532307	0.0523437	0.0302816	0.053409	0	0.114427	0.111681	0.422938	0.398805	0.205782	0	0.0970981	0.105485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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