TCONS_00068138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068138
Unique NameTCONS_00068138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068138 ID=TCONS_00068138|Name=TCONS_00068138|organism=Clytia hemisphaerica|type=transcript|length=1575bp
TTTGGAAACTATTTGCAAACGATCAAAGGTGGATTTTTCGACATTCAGAA
TGGAAAACTACGCTGCAACAGCCGGTGGAGGTTTGAGTTTGCCATCCACC
ACCTCATCATTCAATGAACAACTTCACACATATGCACCTGTCATATCCTC
TACTGCACCTTCAACAACCAGCGACTACCAGCATCAACACCAATACCAAC
ATCTGATGGGTGCATACAATAACTTGATGCCAACTACAGCAACTTTTTCA
ACATCTTCATCATCAAGCCATGAAGCAACTGGTAAACACATTGACTTCAA
CCCTGCACCATTGGAGAGTAGCAGTTTACAATCATGGGGGTCGACCATTT
CTTTGAGGTCCAACACATCATCTGCTTCATCCAGCTCTCCAACAACACCT
TGCTCCTCAACACAAGGTGAAGATAAGTTGAGTGATGGAAATGTGCAATG
TGCTGTTTGCGAAGATAAAGCTTCTGGAAAACATTATGGAGTCATGACTT
GCGAAGggtgcaaaagttttttcaagagaagcatAAGGAGAAATCTTCAA
TACGCATGTCGAGTGGACAACAACTGCAATGTGGACAAACACAGACGAAA
CCAATGCCAAGCTTGCAGATTGACCAAGTGCTTCAAAGCTGGAATGAAAA
AGGATtCTGTTCAGCGAGGTCGACAAACAGTAACCAGATACAGTCCATAC
AACAAGTACCAACAAACACAAGCCAACGAACTAACCACCACCATGATCTC
ACAATTCATTGCATCTCCTACACATCATGaacaaaatactgaaaatctCA
ATACTAAAGGCGTCAGTATTCTTTTAAACATCATTCAATGGGCCAAAACA
AACCCGTACTTCCCATCTTTGACGGCAAACGATCAATTATCATTGCTTAG
AATGTCATGGAAGGAACTCTTTGTTTTACATCTTGCCGAATCTTCAACTA
TACCACCCCAAATAgagaatttgataagaaataATACCTCCCTGCAGGGA
GGTTCATTCGCAAATTACGTCAAGTCATTCCAACGACAATTGGACACTTT
GGCTTCAATGCAACTCGATCAAGCAGAATATGCATGCCTTAAAGCACTTC
TACTTTTCACTGCAGATTCTCCTGGACTTGAAAACGCTTCATACGTACAA
AACTTACAAGACAAAATATTGACGTCATTTGAAAATTATGAACGAACAAA
ATACCCAACACAAATTGAACGATGCAGCAAACTGCTTTTATTGTTATCAT
CATTAAGAACAATCAACCCTGTCCTTCTTagtcaaattttctttgtatgG
TCTTATGGCAAAGCACCTATTCTGGATGAGATCGTTCAAGACATGTTACT
GGCATCTTACAACAACACCAGTGCATCATATGTTGGTGGTATTCAAATAC
CAACCACAACTCAAAATCCTTACAGTAATGAGCAACCAACGAACTATCCA
AATTATAGTTCTTCTTCCATATAATTCTTTTATagcttttgattattttt
ttaaatattctaaaaatgaaatttaaccGTTTGTAAATAGAGGGATTGTT
TCCAAGAAGAAAGGTCAGAATCTGC
Run BLAST on NCBI

protein sequence of TCONS_00068138-protein

>TCONS_00068138-protein ID=TCONS_00068138-protein|Name=TCONS_00068138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=490bp
LETICKRSKVDFSTFRMENYAATAGGGLSLPSTTSSFNEQLHTYAPVISS
TAPSTTSDYQHQHQYQHLMGAYNNLMPTTATFSTSSSSSHEATGKHIDFN
PAPLESSSLQSWGSTISLRSNTSSASSSSPTTPCSSTQGEDKLSDGNVQC
AVCEDKASGKHYGVMTCEGCKSFFKRSIRRNLQYACRVDNNCNVDKHRRN
QCQACRLTKCFKAGMKKDSVQRGRQTVTRYSPYNKYQQTQANELTTTMIS
QFIASPTHHEQNTENLNTKGVSILLNIIQWAKTNPYFPSLTANDQLSLLR
MSWKELFVLHLAESSTIPPQIENLIRNNTSLQGGSFANYVKSFQRQLDTL
ASMQLDQAEYACLKALLLFTADSPGLENASYVQNLQDKILTSFENYERTK
YPTQIERCSKLLLLLSSLRTINPVLLSQIFFVWSYGKAPILDEIVQDMLL
ASYNNTSASYVGGIQIPTTTQNPYSNEQPTNYPNYSSSSI
Run BLAST on NCBI

transcript from alignment at scaffold_48:443694..453033+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068138 ID=TCONS_00068138|Name=TCONS_00068138|organism=Clytia hemisphaerica|type=transcript|length=9340bp|location=Sequence derived from alignment at scaffold_48:443694..453033+ (Clytia hemisphaerica)
TTTGGAAACTATTTGCAAACGATCAAAGGTAAGAATCTTTTGAAATAATT
GATTATTCCTCCTACATAACCGCCCCCGCCCCCAACTTTCTGTTTCGAAA
ATGAAATACATAGATGAAGGTTAGAAAAAGATTCCGATCGAccttaaatt
ttttataaaactttgTAAAATGAAAATTGGGTTAATTTCGCAGTACAGTG
GATACCTCTTAAACACGCATAGTTTTAAACTCTCAAAGCTGCTTTTTGTT
ATCTCAGAACCATCAAAGATAATTTGTCAtgataatttttaaactttcat
aAATACTTACAATAAAAGTCATaacatttgagaaaaaagagaaaaccccA
CGAAATCTTTaacaatggtccaatagggctcagcaTATAGCGTGGAAGTC
TATATAAACCTCTCCCGAATTGTGATATCTGAATGAATTTATCAAtttag
cccaaaagcgactttctcacccgaactttaaattgctaaaaacgaagaat
taaccaaaattttcaatatattttgaccaagaTTGTAGTTTTACTATCTT
CAATTACattaaaatttcctaaaatgcaatttttgaaaagttatatCGAA
AATCCCTTCCAAAATTAGGTCCTCTCGTCTCAgaagattttcaaaatcaa
aaaaaatataggTCTTTTCGTCTCAGAAGATTTTTTCAATCacattgaaa
atttcttcaaaaaataggTTTATTCGtcttagaaaattttcaaaacttct
tCAAAAAGTTAGGTCCTTTCGcctcaaaagattttcaaaagaatatcgaa
aattccttcaaaaaataGGTCATGCTTTCGCCTCAGgagattttcaaaat
tacgTCGAAAATCCCTTGAAAAAATTAAGTGTTTCGGTCTCAGAGATAGC
GCTACTGTATTAAAGGATACACTtatacttttaaaatattttttccataa
ttCCCAAATCATTCATTACCTATATCCTCATAAATTTACTAGCCGGCGTA
TTTTTGgcataacattttcaaatactTAGATTTTTCTCATGAGATTccta
gcatcatgaaaaacattccttAGTTTGAGTAAGTTGTGAGAGTAAAGACA
CTTTGCGTGGTACTTAGGCTTTTATTTCGGGTTTTATTTCAGTTTTCACG
TACATTGTTGTTGGAAAAATAATACTTGAAAAAAAGATAGCAATCACCGT
TCTAAATTGggttattccagaaaaaattgtaTACCCTACAATCAAGGttg
taatatttgaaaaaatcgactttctcgacggaactttaaatcttgaaaaa
cgttaaaataactggaattctcattatattacattatattggcatttttg
gatttccGTAAATGGGACCTtctgaaaaagtgaaatatttcaccaaaaac
ttatTTTGACCCAGTGAAAATGCAATGGGAATGCAGCAAAGGGttatttt
ctacatttttggggttttctggtaattttagaccccccacAGAGCAGAAG
Tcggcattttgaattttcaaagacaatcaaggtcgtaatatttgagaaaa
aagagaaatccaccgggaagttttggaaccacaatcgatttgtaagtgct
ttaaagtaggttcgaaaggtagagttttaactctaacTCTTGACTTAAAA
CTTAGGACCTTatgatctgaggatccaaaagttcaaaaatagtccaataa
ggctcagaatatagcctggaagtctgctaacccctcccaaattgaaatat
tcgattaaataaaagagatggcccaaaatcgactttctcgccggaacttt
aaatcttgaaaaacgctaaaataaccggaattctcattatATTTCAACCT
TTATTGTAGGTTAAGaaggtctttttttaaaaatgtgacCTCGCctttaa
accttttttcttattgttgattCAAAGTTGATCGAGAATCGATCATCAAT
GAATCGATCATCTTTATCTTGACTGTTTCAAAACCTACTTAGCTTTTTCT
AGGTTTTGCCGTCTGGCCCTAATTGAGGTATTCTGAAATTAGTCAGTAGC
AGATATTAAGCCTTTCACTTAGGGTGGGCTTTAGAAGAATCAACGAGTGA
GCTAGATTCGTCTTGCCAGCGCATACTTTATAAAAACGTCCAATGTTGAC
TATGAAAACACGAACATTTCCTAACCTTCTCAGGCTTCAGAAAAGAAAAC
ACTGCTACTTTCATTCAAACTTCACGCTATATTTTACTGCCGATTGATTG
GTTGAATACGAGCTGATAAAAGGCGTATAGAAAGATACATTGTATGCATC
AACTTCAGCACCGAGGGCTATAAATCCACATGCCTTTAACCTTTTGTAAA
TCAAAAGTTACCAGGTGCCCTGACCAGCGCCACATCCTCGTACCCCTATT
TGCCCAAGTCCCCTGGGGATATGATGTCTCGCcgtttttttaatgtttgt
CAAAACATTCGTCACTTATCTAAAATGATTACCACTCTTccttaagcaaa
aaaaaagaaattacggaaaaatacagaaaaaaaactttgaactcaaagaa
ataaaataaaatgaagaatgAAGAAAAAACTAAACAATCATAATTcaagt
tgaaaatcaaaaaaaattaaaataagcgTATTTTTCGCAGTTATTGAGCC
CTCGAAATCCCATTAGTATGAGACAATCGATAGAAAAAGTACGAACTTGA
AGTGGTAATGGAATCcgaataaaatatttcaaaactcgtTCCCTGCTTTC
GTAAGATTTAAAAGTATTATGTATTTTTTCGATAATGCATAATGATACAC
ATTGCTTAGTAGAGgccaaattaattttcaaatattaacaTATTCAAAAT
ATTACATGTCATTCAAGAAAGTCTGTAGTGCAAAAGACATTGATTAGGTC
AGAAAATGAAGCACAAAAAAGATCAACATTTTCAAGacattgaattttct
ttttttttaatttaatattttaattctaaatttcccaaatttgaattaaa
gaaacaattaaagtggtctctcaaaaaataaaaaatgcggGGTCAAATGG
GAGGAAAGGAGAAATTATGCAATTACTTTGACATGTGGAATAAATCACGT
CCACAGCCATTACCCACAGGATAATTAATCCAAGGCTTACATTCTCCATT
TCgaaattgaaatattattttccgtttatctttgaaagatatttaaaCTT
TACGAGATATTTTGTAGATTGGATATTTTTTTACAAGCTATACaaaattg
tattgaaaaaatttttatgaaaagaaaaaaaacgtttttccatacctaaa
aaatgaattaatttcttacaaaataaatGAACTCGCAATacaagagattt
tttttggcaactcagtataccctaaagaacatctgtgccaattttcagct
tgataGCAATTTTGTCCAGGTCTCAGGCTAATTCTACCTGACAATAAGGC
AACAATTGTGGCAGTAAaattgatatttcaaaaaaaacaaaatcaagagg
CAAATAGATTGGATTcacaaacaaataaaaatgaaaacccTCTGTGGCAA
gtttgatgaaaaaagtttgtccaTGGATCTGAAATTTAATCGATGACTAG
TTCTAACATAATTTCGCataaattttttacattttgtcaattgatgaaaa
aaagttgaatgatgGGGAGAAGGAATTGAGACATTTTGGGAAGGGTTTGT
GGGTGTGATTGTTGTCTGTTGGGAAGTGGAAATGTAGGATTCAAAGTGTT
GTCGATATTGCAATTCCTGCATCCAATGGCAATCATATTTTCATATTGTA
TTTTCAATATTCTGGCACGCCTTAAAGGTGTATATTTTTGATTCATTGGT
AAAGTTATTATATTCGTGGTTCCAATTGGACAGAATGTTTATTACCTTTA
TTACCTGGTGAGTACGAATACGGCGTTATTTATTCAGATTGAAAAAGTTG
GTAATGAAGATCTGACATTGTGAAGAATTCAATGATCAATTATCTAGAAA
CAACATTTACATATCAATTGCAATGTTGTTTCAAGCACTGTTATTATATT
ATAATTTCATTTTAGATTCAATAAAGAAATAGGTACATcatttcaaagat
attttttcCTTACTTCTGGAAGAAATACCATATACAAATTTATAAGCAAT
TCATTGGACAACATTCTTTATTCCCTGCAAACTCACTCACATCCCCATTT
TTTACtaagatgaatttttttcgtatttaaaaataaataaatttgcagtt
attcttcaaaattgaataggtttaaattttcttaattttcatgaaaatat
tcATCAACTTTcttaattttcataaaaatattgatcaatttaaatgtgtt
tttcttgtatgtaacaatgtgaaaaataacttttttatcgatgatttgaa
attgaaatccaAAATGTTTTTCCGATAATTTAAATTTTGGCTTTCTTTTC
GTTAAACGGAGAAATTGACcggttttatttttgaaaagctgataaaatta
tcaTTCCAACGGTATTTAGAAACCTTAATGatcaaataataatttttcta
GGTTGACCCTAAATTTTACAGGACTACATGGCTGGCAAAAAAAACTATTT
GATTCCCATCCGaaagttttgaataaataatctttaatttctacatcaaa
tattttctgtctaatctgctattttttgtgtCTTTCTAAATCTTAAATCT
AATACGCAAGCGTCAGATTTTGTTATTTCCTAATAGATGCCCTAACTTGA
ATCAAACCTACCAATTCTAAATTTaagtctttaaaaaagaatCTACAATA
CAGCTTTGTCTGAAGATTCTGCCTGTGTAAAGCATGCAAAATAACATTTA
TTTGTATAAGTtagttttttaacttttcgacATCCATAAACAAGTCTGAA
GAATTTGTTATCAATTTACATTAACGTTGATAAATTTGACAAACTGACTT
TTTTCCGCCATTATTGATAGTGACTCACTATACGCCTCTCAAGCTCTCCA
TTTTGTTTTCGGTTTTATTGTTATTGTATTCAAAATGGCAGGATTTCAGT
TAAGGCCTCCTTCACCTTAATGTCGTATCCTCCCGCGGAAATAAAACGCA
TCGAgcacaaaacaaataaaatttggaataaTATTTTCTCTTGAATTTCA
TATTTACTGTTTTACCACGATTTGTAAATCTCCAAAACTGGTGAggtaat
tttcttaaatttagaATATAGAGcctgtttaaaaaatattcgtTGAAAAA
TAAGGTGAATGTTGCGAATGCAAAATCGTTAGATAATTTCCTTTTTTATG
taataaatgtaatttttaGTGTGGAAAAAGTTAAAGGACATGCAGGAACC
ACTAATAGGGCCACATTGGTGATCAGCACGTTTCTTGGCGTAAATCACTT
GCTTGAGGATGCTCTCACTtccccaaaaaaatttaaaacgctAGAATAAT
AATAATCAAACGGCTTTTTATGATATTTATCAACATATTTCTCGACAAAG
TTAAGTAACTATTTTTCTAGTTTCTGAACATACTAAAAGTCCTGAGAAAG
CTTGTTTGGAAAACTactaaaactatgaaaatatgAACGCTATGAATCCC
TAAAACGTCTCCATAGAACCATAGTTTTAATAAACTGCAACGGTTTCAAC
TTAAAGGAAAATTCGAAGCTGGGACAGAAAATTGGAAATATCGTCTAACT
TGATTTAACAACGTACTTTCATTGTTGTCAAAAATATAGTCATCCGAACT
TCAATATGAAATTGACTGAAGAATATTTTAATCAGTGATATAGGGGTAAA
GTAAATAATCCACAAGGAATACTCAAGGCTGATACCTCGAAAAAAGGGGG
TCAAAAGATGATTGTGAACGATGTATAATCTGTAGGTAAAACGAATTTAC
TACGAATAAAATTTAGTTCGTTGATtatgaatttcaagattttcaatacT
GGACATTATTGGGTTACAGAAAAAACCTCAATTGTGTATACCCATAGTGA
AAACGGTCAACCTGTAATGGAATTTAAAAGCtggaaaaattgtgaaaatc
taGTTGTTTGTTTTACCGGGAAAAGACTGGTCGTTAAGGCGATTTGATAT
CTTTTAATAGGGGATAGTAAACCGAAAATGGAAGAAACGAGTCTAAATAC
CTTTTGTGAAATAATATTTGGTATATTTCTCTTAGAGATCGAATGTTAGT
TAGGTCGGACTTACCAAATAAATAAGGGGAGTTTCAATTTTCAGCCCATC
GATGGAATCTGATTTAATCGAATTCAATTAACATGAAGGAATGACCTATC
TTTGCATTAATGATAGTCATCAGCTGAATGAGGGTGTAGGCAGAAAATTA
AGCAAAGGTATTTACCCAAATATCTTACTAAAAACAGGGTAGGcgttaaa
ataaataaaatgaggGGAGCAGTAAACAGACTCATTCCCAGCCTACGTGC
TGCGAGAACAACAACATTTCATAATCGAACGCCAAAAGTACAAACGCTTT
GTGGCTAGGATGACAATTAACTGTGGAGGATGGTCTTGTCTGACGTCATA
TCTCTTAaaatttaagtaaaaaaaattcgCGACGCTTTACATCATTAAAC
CCTTTAATGTCAAAAAAAACGGCTTATGGAAGACCAAATTTATTATGATT
AATAACCCAATTTTTAACATGTTAATTTTGCGAGAATTACATAGTTTTCT
ATGGCTAAAAATAGAGTATAATATCGGTAAAATGCAACTGAAAAGTATTT
ATTGGCAAATCTACGTAAACGAAAATATACGATGATTAGAAAGTTCAAAC
TTAGGTCTTTTAGAAAGTAAACTAAGCGAAAAACTGAGTAACTTGAATTG
GGAAAGAAAATACTCTAAggacaaattttacaaaatttttaacCAATGGA
GACAGTGACGAAAAGAGCTTGAGTGATTAGAAACCgaaacttttaaagaa
tattttaactGCCAAGTAATATTTCAAGATAATCGTACTGTCTGGAATAA
ATTAATAGTTTATTGTTTATACGATGCATAATTAGTGACAAACAATTAGA
CTGCATATTAATTTATTAGACTTGATGAATTCCGATTGAGAAAGAGAGCA
GTTATTAATTAAATTTGACATCTCGTCATTGTTGTTGTCTATAAAACTTA
GTGTACAGACACTTCTTGTATACCATTCGACTAATTAACACGGTCCGTAC
ACCACACtgtaaacaaaataaacaatttaactttgagctcaaatttttaa
aacactATGATTAAAGTCGAACCGTGTATTCGGCAGACTTTCCAACACGT
AAGTATTCATGCATTTTGTTTGAATTAAGGTCATACAAATTTCTATGTTA
TGCAGCTTACAGCCATCAGCACATTGGAAACAATGCTACAAAATATTTGA
ACCACCTTTTGCTTACTCGTTCATTTACAGGTGGATTTTTCGACATTCAG
AATGGAAAACTACGCTGCAACAGCCGGTGGAGGTTTGAGTTTGCCATCCA
CCACCTCATCATTCAATGAACAACTTCACACATATGCACCTGTCATATCC
TCTACTGCACCTTCAACAACCAGCGACTACCAGCATCAACACCAATACCA
ACATCTGATGGGTGCATACAATAACTTGATGCCAACTACAGCAACTTTTT
CAACATCTTCATCATCAAGCCATGAAGCAACTGGTAAACACATTGACTTC
AACCCTGCACCATTGGAGAGTAGCAGTTTACAATCATGGGGGTCGACCAT
TTCTTTGAGGTCCAACACATCATCTGCTTCATCCAGCTCTCCAACAACAC
CTTGCTCCTCAACACAAGGTGAAGATAAGTTGAGTGATGGAAATGTGCAA
TGTGCTGTTTGCGAAGATAAAGCTTCTGGAAAACATTATGGAGTCATGAC
TTGCGAAGGTAATTCAACAAATGTTGTTTATAACTGTTGtttaacaaacc
tttccataggataaaTATATTTCTTTGTAAGATTTGTGTGATTCTGGCTA
TATTTATTGATATGTTGATTTTCTTTCATTCTAGggtgcaaaagtttttt
caagagaagcatAAGGAGAAATCTTCAATACGCATGTCGAGTGGACAACA
ACTGCAATGTGGACAAACACAGACGAAACCAATGCCAAGCTTGCAGATTG
ACCAAGTGCTTCAAAGCTGGAATGAAAAAGGATtgtaagttttcaaaaaa
cgttttcaaaaaaacagtATTCAAACTTTGTTTACCTAACCTTTAAACCC
AATTcctgttttatttttaaatttttaaattcgcTTTTTGTTTTCTTACA
GCTGTTCAGCGAGGTCGACAAACAGTAACCAGATACAGTCCATACAACAA
GTACCAACAAACACAAGCCAACGAACTAACCACCACCATGATCTCACAAT
TCATTGCATCTCCTACACATCATGaacaaaatactgaaaatctCAATACT
AAAGGCGTCAGTATTCTTTTAAACATCATTCAATGGGCCAAAACAAACCC
GTACTTCCCATCTTTGACGGCAAACGATCAATTATCATTGCTTAGAATGT
CATGGAAGGAACTCTTTGTTTTACATCTTGCCGAATCTTCAACTATACCA
CCCCAAATAgagaatttgataagaaataATACCTCCCTGCAGGGAGGTTC
ATTCGCAAATTACGTCAAGTCATTCCAACGACAATTGGACACTTTGGCTT
CAATGCAACTCGATCAAGCAGAATATGCATGCCTTAAAGCACTTCTACTT
TTCACTGCAGGTAACAATCTCTTCTTAACATAGCTAGTTCTTCTTAATCa
agttcttcaaaaatgttaagtgaaaatatagcatagaaaatatttatttt
tctaaaacctATTGTCTTCTCTTACTTTAGATTCTCCTGGACTTGAAAAC
GCTTCATACGTACAAAACTTACAAGACAAAATATTGACGTCATTTGAAAA
TTATGAACGAACAAAATACCCAACACAAATTGAACGATGCAGCAAACTGC
TTTTATTGTTATCATCATTAAGAACAATCAACCCTGTCCTTCTTagtcaa
attttctttgtatgGTCTTATGGCAAAGCACCTATTCTGGATGAGATCGT
TCAAGACATGTTACTGGCATCTTACAACAACACCAGTGCATCATATGTTG
GTGGTATTCAAATACCAACCACAACTCAAAATCCTTACAGTAATGAGCAA
CCAACGAACTATCCAAATTATAGTTCTTCTTCCATATAATTCTTTTATag
cttttgattatttttttaaatattctaaaaatgaaatttaaccGTTTGTA
AATAGAGGGATTGTTTCCAAGAAGAAAGGTCAGAATCTGC

Coding sequence (CDS) from alignment at scaffold_48:443694..453033+

>TCONS_00068138 ID=TCONS_00068138|Name=TCONS_00068138|organism=Clytia hemisphaerica|type=CDS|length=7365bp|location=Sequence derived from alignment at scaffold_48:443694..453033+ (Clytia hemisphaerica)
TTGGAAACTATTTGCAAACGATCAAAGGTGGATTTTTCGACATTCAGAAT
GGAAAACTACGCTGCAACAGCCGGTGGAGGTTTGAGTTTGCCATCCACCA
CCTCATCATTCAATGAACAACTTCACACATATGCACCTGTCATATCCTCT
ACTGCACCTTCAACAACCAGCGACTACCAGCATCAACACCAATACCAACA
TCTGATGGGTGCATACAATAACTTGATGCCAACTACAGCAACTTTTTCAA
CATCTTCATCATCAAGCCATGAAGCAACTGGTAAACACATTGACTTCAAC
CCTGCACCATTGGAGAGTAGCAGTTTACAATCATGGGGGTCGACCATTTC
TTTGAGGTCCAACACATCATCTGCTTCATCCAGCTCTCCAACAACACCTT
GCTCCTCAACACAAGGTGAAGATAAGTTGAGTGATGGAAATGTGCAATGT
GCTGTTTGCGAAGATAAAGCTTCTGGAAAACATTATGGAGTCATGACTTG
CGAAGggtgcaaaagttttttcaagagaagcatAAGGAGAAATCTTCAAT
ACGCATGTCGAGTGGACAACAACTGCAATGTGGACAAACACAGACGAAAC
CAATGCCAAGCTTGCAGATTGACCAAGTGCTTCAAAGCTGGAATGAAAAA
GGATtCTGTTCAGCGAGGTCGACAAACAGTAACCAGATACAGTCCATACA
ACAAGTACCAACAAACACAAGCCAACGAACTAACCACCACCATGATCTCA
CAATTCATTGCATCTCCTACACATCATGaacaaaatactgaaaatctCAA
TACTAAAGGCGTCAGTATTCTTTTAAACATCATTCAATGGGCCAAAACAA
ACCCGTACTTCCCATCTTTGACGGCAAACGATCAATTATCATTGCTTAGA
ATGTCATGGAAGGAACTCTTTGTTTTACATCTTGCCGAATCTTCAACTAT
ACCACCCCAAATAgagaatttgataagaaataATACCTCCCTGCAGGGAG
GTTCATTCGCAAATTACGTCAAGTCATTCCAACGACAATTGGACACTTTG
GCTTCAATGCAACTCGATCAAGCAGAATATGCATGCCTTAAAGCACTTCT
ACTTTTCACTGCAGATTCTCCTGGACTTGAAAACGCTTCATACGTACAAA
ACTTACAAGACAAAATATTGACGTCATTTGAAAATTATGAACGAACAAAA
TACCCAACACAAATTGAACGATGCAGCAAACTGCTTTTATTGTTATCATC
ATTAAGAACAATCAACCCTGTCCTTCTTagtcaaattttctttgtatgGT
CTTATGGCAAAGCACCTATTCTGGATGAGATCGTTCAAGACATGTTACTG
GCATCTTACAACAACACCAGTGCATCATATGTTGGTGGTATTCAAATACC
AACCACAACTCAAAATCCTTACAGTAATGAGCAACCAACGAACTATCCAA
ATTATAGTTCTTCTTCCATATAATTGGAAACTATTTGCAAACGATCAAAG
GTGGATTTTTCGACATTCAGAATGGAAAACTACGCTGCAACAGCCGGTGG
AGGTTTGAGTTTGCCATCCACCACCTCATCATTCAATGAACAACTTCACA
CATATGCACCTGTCATATCCTCTACTGCACCTTCAACAACCAGCGACTAC
CAGCATCAACACCAATACCAACATCTGATGGGTGCATACAATAACTTGAT
GCCAACTACAGCAACTTTTTCAACATCTTCATCATCAAGCCATGAAGCAA
CTGGTAAACACATTGACTTCAACCCTGCACCATTGGAGAGTAGCAGTTTA
CAATCATGGGGGTCGACCATTTCTTTGAGGTCCAACACATCATCTGCTTC
ATCCAGCTCTCCAACAACACCTTGCTCCTCAACACAAGGTGAAGATAAGT
TGAGTGATGGAAATGTGCAATGTGCTGTTTGCGAAGATAAAGCTTCTGGA
AAACATTATGGAGTCATGACTTGCGAAGggtgcaaaagttttttcaagag
aagcatAAGGAGAAATCTTCAATACGCATGTCGAGTGGACAACAACTGCA
ATGTGGACAAACACAGACGAAACCAATGCCAAGCTTGCAGATTGACCAAG
TGCTTCAAAGCTGGAATGAAAAAGGATtCTGTTCAGCGAGGTCGACAAAC
AGTAACCAGATACAGTCCATACAACAAGTACCAACAAACACAAGCCAACG
AACTAACCACCACCATGATCTCACAATTCATTGCATCTCCTACACATCAT
GaacaaaatactgaaaatctCAATACTAAAGGCGTCAGTATTCTTTTAAA
CATCATTCAATGGGCCAAAACAAACCCGTACTTCCCATCTTTGACGGCAA
ACGATCAATTATCATTGCTTAGAATGTCATGGAAGGAACTCTTTGTTTTA
CATCTTGCCGAATCTTCAACTATACCACCCCAAATAgagaatttgataag
aaataATACCTCCCTGCAGGGAGGTTCATTCGCAAATTACGTCAAGTCAT
TCCAACGACAATTGGACACTTTGGCTTCAATGCAACTCGATCAAGCAGAA
TATGCATGCCTTAAAGCACTTCTACTTTTCACTGCAGATTCTCCTGGACT
TGAAAACGCTTCATACGTACAAAACTTACAAGACAAAATATTGACGTCAT
TTGAAAATTATGAACGAACAAAATACCCAACACAAATTGAACGATGCAGC
AAACTGCTTTTATTGTTATCATCATTAAGAACAATCAACCCTGTCCTTCT
TagtcaaattttctttgtatgGTCTTATGGCAAAGCACCTATTCTGGATG
AGATCGTTCAAGACATGTTACTGGCATCTTACAACAACACCAGTGCATCA
TATGTTGGTGGTATTCAAATACCAACCACAACTCAAAATCCTTACAGTAA
TGAGCAACCAACGAACTATCCAAATTATAGTTCTTCTTCCATATAATTGG
AAACTATTTGCAAACGATCAAAGGTGGATTTTTCGACATTCAGAATGGAA
AACTACGCTGCAACAGCCGGTGGAGGTTTGAGTTTGCCATCCACCACCTC
ATCATTCAATGAACAACTTCACACATATGCACCTGTCATATCCTCTACTG
CACCTTCAACAACCAGCGACTACCAGCATCAACACCAATACCAACATCTG
ATGGGTGCATACAATAACTTGATGCCAACTACAGCAACTTTTTCAACATC
TTCATCATCAAGCCATGAAGCAACTGGTAAACACATTGACTTCAACCCTG
CACCATTGGAGAGTAGCAGTTTACAATCATGGGGGTCGACCATTTCTTTG
AGGTCCAACACATCATCTGCTTCATCCAGCTCTCCAACAACACCTTGCTC
CTCAACACAAGGTGAAGATAAGTTGAGTGATGGAAATGTGCAATGTGCTG
TTTGCGAAGATAAAGCTTCTGGAAAACATTATGGAGTCATGACTTGCGAA
GggtgcaaaagttttttcaagagaagcatAAGGAGAAATCTTCAATACGC
ATGTCGAGTGGACAACAACTGCAATGTGGACAAACACAGACGAAACCAAT
GCCAAGCTTGCAGATTGACCAAGTGCTTCAAAGCTGGAATGAAAAAGGAT
tCTGTTCAGCGAGGTCGACAAACAGTAACCAGATACAGTCCATACAACAA
GTACCAACAAACACAAGCCAACGAACTAACCACCACCATGATCTCACAAT
TCATTGCATCTCCTACACATCATGaacaaaatactgaaaatctCAATACT
AAAGGCGTCAGTATTCTTTTAAACATCATTCAATGGGCCAAAACAAACCC
GTACTTCCCATCTTTGACGGCAAACGATCAATTATCATTGCTTAGAATGT
CATGGAAGGAACTCTTTGTTTTACATCTTGCCGAATCTTCAACTATACCA
CCCCAAATAgagaatttgataagaaataATACCTCCCTGCAGGGAGGTTC
ATTCGCAAATTACGTCAAGTCATTCCAACGACAATTGGACACTTTGGCTT
CAATGCAACTCGATCAAGCAGAATATGCATGCCTTAAAGCACTTCTACTT
TTCACTGCAGATTCTCCTGGACTTGAAAACGCTTCATACGTACAAAACTT
ACAAGACAAAATATTGACGTCATTTGAAAATTATGAACGAACAAAATACC
CAACACAAATTGAACGATGCAGCAAACTGCTTTTATTGTTATCATCATTA
AGAACAATCAACCCTGTCCTTCTTagtcaaattttctttgtatgGTCTTA
TGGCAAAGCACCTATTCTGGATGAGATCGTTCAAGACATGTTACTGGCAT
CTTACAACAACACCAGTGCATCATATGTTGGTGGTATTCAAATACCAACC
ACAACTCAAAATCCTTACAGTAATGAGCAACCAACGAACTATCCAAATTA
TAGTTCTTCTTCCATATAATTGGAAACTATTTGCAAACGATCAAAGGTGG
ATTTTTCGACATTCAGAATGGAAAACTACGCTGCAACAGCCGGTGGAGGT
TTGAGTTTGCCATCCACCACCTCATCATTCAATGAACAACTTCACACATA
TGCACCTGTCATATCCTCTACTGCACCTTCAACAACCAGCGACTACCAGC
ATCAACACCAATACCAACATCTGATGGGTGCATACAATAACTTGATGCCA
ACTACAGCAACTTTTTCAACATCTTCATCATCAAGCCATGAAGCAACTGG
TAAACACATTGACTTCAACCCTGCACCATTGGAGAGTAGCAGTTTACAAT
CATGGGGGTCGACCATTTCTTTGAGGTCCAACACATCATCTGCTTCATCC
AGCTCTCCAACAACACCTTGCTCCTCAACACAAGGTGAAGATAAGTTGAG
TGATGGAAATGTGCAATGTGCTGTTTGCGAAGATAAAGCTTCTGGAAAAC
ATTATGGAGTCATGACTTGCGAAGggtgcaaaagttttttcaagagaagc
atAAGGAGAAATCTTCAATACGCATGTCGAGTGGACAACAACTGCAATGT
GGACAAACACAGACGAAACCAATGCCAAGCTTGCAGATTGACCAAGTGCT
TCAAAGCTGGAATGAAAAAGGATtCTGTTCAGCGAGGTCGACAAACAGTA
ACCAGATACAGTCCATACAACAAGTACCAACAAACACAAGCCAACGAACT
AACCACCACCATGATCTCACAATTCATTGCATCTCCTACACATCATGaac
aaaatactgaaaatctCAATACTAAAGGCGTCAGTATTCTTTTAAACATC
ATTCAATGGGCCAAAACAAACCCGTACTTCCCATCTTTGACGGCAAACGA
TCAATTATCATTGCTTAGAATGTCATGGAAGGAACTCTTTGTTTTACATC
TTGCCGAATCTTCAACTATACCACCCCAAATAgagaatttgataagaaat
aATACCTCCCTGCAGGGAGGTTCATTCGCAAATTACGTCAAGTCATTCCA
ACGACAATTGGACACTTTGGCTTCAATGCAACTCGATCAAGCAGAATATG
CATGCCTTAAAGCACTTCTACTTTTCACTGCAGATTCTCCTGGACTTGAA
AACGCTTCATACGTACAAAACTTACAAGACAAAATATTGACGTCATTTGA
AAATTATGAACGAACAAAATACCCAACACAAATTGAACGATGCAGCAAAC
TGCTTTTATTGTTATCATCATTAAGAACAATCAACCCTGTCCTTCTTagt
caaattttctttgtatgGTCTTATGGCAAAGCACCTATTCTGGATGAGAT
CGTTCAAGACATGTTACTGGCATCTTACAACAACACCAGTGCATCATATG
TTGGTGGTATTCAAATACCAACCACAACTCAAAATCCTTACAGTAATGAG
CAACCAACGAACTATCCAAATTATAGTTCTTCTTCCATATAATTGGAAAC
TATTTGCAAACGATCAAAGGTGGATTTTTCGACATTCAGAATGGAAAACT
ACGCTGCAACAGCCGGTGGAGGTTTGAGTTTGCCATCCACCACCTCATCA
TTCAATGAACAACTTCACACATATGCACCTGTCATATCCTCTACTGCACC
TTCAACAACCAGCGACTACCAGCATCAACACCAATACCAACATCTGATGG
GTGCATACAATAACTTGATGCCAACTACAGCAACTTTTTCAACATCTTCA
TCATCAAGCCATGAAGCAACTGGTAAACACATTGACTTCAACCCTGCACC
ATTGGAGAGTAGCAGTTTACAATCATGGGGGTCGACCATTTCTTTGAGGT
CCAACACATCATCTGCTTCATCCAGCTCTCCAACAACACCTTGCTCCTCA
ACACAAGGTGAAGATAAGTTGAGTGATGGAAATGTGCAATGTGCTGTTTG
CGAAGATAAAGCTTCTGGAAAACATTATGGAGTCATGACTTGCGAAGggt
gcaaaagttttttcaagagaagcatAAGGAGAAATCTTCAATACGCATGT
CGAGTGGACAACAACTGCAATGTGGACAAACACAGACGAAACCAATGCCA
AGCTTGCAGATTGACCAAGTGCTTCAAAGCTGGAATGAAAAAGGATtCTG
TTCAGCGAGGTCGACAAACAGTAACCAGATACAGTCCATACAACAAGTAC
CAACAAACACAAGCCAACGAACTAACCACCACCATGATCTCACAATTCAT
TGCATCTCCTACACATCATGaacaaaatactgaaaatctCAATACTAAAG
GCGTCAGTATTCTTTTAAACATCATTCAATGGGCCAAAACAAACCCGTAC
TTCCCATCTTTGACGGCAAACGATCAATTATCATTGCTTAGAATGTCATG
GAAGGAACTCTTTGTTTTACATCTTGCCGAATCTTCAACTATACCACCCC
AAATAgagaatttgataagaaataATACCTCCCTGCAGGGAGGTTCATTC
GCAAATTACGTCAAGTCATTCCAACGACAATTGGACACTTTGGCTTCAAT
GCAACTCGATCAAGCAGAATATGCATGCCTTAAAGCACTTCTACTTTTCA
CTGCAGATTCTCCTGGACTTGAAAACGCTTCATACGTACAAAACTTACAA
GACAAAATATTGACGTCATTTGAAAATTATGAACGAACAAAATACCCAAC
ACAAATTGAACGATGCAGCAAACTGCTTTTATTGTTATCATCATTAAGAA
CAATCAACCCTGTCCTTCTTagtcaaattttctttgtatgGTCTTATGGC
AAAGCACCTATTCTGGATGAGATCGTTCAAGACATGTTACTGGCATCTTA
CAACAACACCAGTGCATCATATGTTGGTGGTATTCAAATACCAACCACAA
CTCAAAATCCTTACAGTAATGAGCAACCAACGAACTATCCAAATTATAGT
TCTTCTTCCATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042532XLOC_042532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068138-exon-scaffold_48-1491911889:443694..443721TCONS_00068138-exon-scaffold_48-1491911889:443694..443721Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1510915933:443694..443721TCONS_00068138-exon-scaffold_48-1510915933:443694..443721Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1575043694:443694..443721TCONS_00068138-exon-scaffold_48-1575043694:443694..443721Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1491911889:451124..451601TCONS_00068138-exon-scaffold_48-1491911889:451124..451601Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1510915933:451124..451601TCONS_00068138-exon-scaffold_48-1510915933:451124..451601Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1575043694:451124..451601TCONS_00068138-exon-scaffold_48-1575043694:451124..451601Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1491911889:451728..451877TCONS_00068138-exon-scaffold_48-1491911889:451728..451877Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1510915933:451728..451877TCONS_00068138-exon-scaffold_48-1510915933:451728..451877Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1575043694:451728..451877TCONS_00068138-exon-scaffold_48-1575043694:451728..451877Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1491911889:451995..452453TCONS_00068138-exon-scaffold_48-1491911889:451995..452453Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1510915933:451995..452453TCONS_00068138-exon-scaffold_48-1510915933:451995..452453Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1575043694:451995..452453TCONS_00068138-exon-scaffold_48-1575043694:451995..452453Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1491911889:452574..453033TCONS_00068138-exon-scaffold_48-1491911889:452574..453033Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1510915933:452574..453033TCONS_00068138-exon-scaffold_48-1510915933:452574..453033Clytia hemisphaericaexon
TCONS_00068138-exon-scaffold_48-1575043694:452574..453033TCONS_00068138-exon-scaffold_48-1575043694:452574..453033Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068138-proteinTCONS_00068138-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:443694..453033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.025972	0	0	0	1.26089	1.02405	1.60277	1.59428	0.744127	1.40969	0.210505	1.2281	1.88277	0.735472	0.176973	0.74385	0	0.0399678	0.138044	0.0866719	0.0251112	0	0	0.0270734	0.0836549	0.0497734	0	0.0380069	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001628Znf_hrmn_rcpt
IPR001723Nuclear_hrmn_rcpt
IPR000536Nucl_hrmn_rcpt_lig-bd
IPR013088Znf_NHR/GATA
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0008270zinc ion binding
GO:0003707steroid hormone receptor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0043401steroid hormone mediated signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043401 steroid hormone mediated signaling pathway
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003707 steroid hormone receptor activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00068138 vs. Swiss-Prot (Human)
Match: COT1 (COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 2.807e-80
Identity = 136/333 (40.84%), Postives = 207/333 (62.16%), Query Frame = 2 
Query:  431 SDGNVQCAVCEDKASGKHYGVMTCEGCKSFFKRSIRRNLQYACRVDNNCNVDKHRRNQCQACRLTKCFKAGMKKDSVQRGRQTVTRYSPYNKYQQTQANELTT-TMISQFIASPTHHE-----------------QNTENLNTKGVSILLNIIQWAKTNPYFPSLTANDQLSLLRMSWKELFVLHLAESST---IPPQIENLIRNNTSLQGG---SFANYVKSFQRQLDTLASMQLDQAEYACLKALLLFTADSPGLENASYVQNLQDKILTSFENYERTKYPTQIERCSKXXXXXXXXRTINPVLLSQIFFVWSYGKAPILDEIVQDMLLAS 1357
            S  +++C VC DK+SGKHYG  TCEGCKSFFKRS+RRNL Y CR + NC +D+H RNQCQ CRL KC K GM++++VQRGR   T+ +P  +Y  T  + L     +S +I+     E                    EN+      +L + ++WA+  P+FP L   DQ+SLLR++W ELFVL+ A+ S    + P +     + + +      +F ++++ FQ Q++ L ++ +D AEY+CLKA++LFT+D+ GL +A+++++LQ+K   + E Y R++YP Q  R  KLLL L SLRT++  ++ Q+FFV   GK PI + +++DMLL+ 
Sbjct:   80 SQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNP-GQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI-ETLIRDMLLSG 410
The following BLAST results are available for this feature:
BLAST of TCONS_00068138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COT12.807e-8040.84COUP transcription factor 1 OS=Homo sapiens GN=NR2... [more]
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