|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068131 ID=TCONS_00068131|Name=TCONS_00068131|organism=Clytia hemisphaerica|type=transcript|length=817bp
CTGCTTTGGCTCATAcccataattttttttaaagaaaattataatGCTAT
AATGTACAAATGATGAAGTTATACTTGTGGGAATCTCTCTGAAATTCTGA
TGATAACCTTGCAAGTTTCTGATGTATTTGAAAGCAAGAGTGTATAGAAG
TTTCTGGAAAGGTAGGCCCAAATCTTGAATAGATCGCATGTGGCCAATAA
GTAAATTCCATAATTTGATACTGGAAGTTTTTTACCATGGAAACTACCAA
TAGTTCATAATTATTATATGACCCATTTTTAAGAATTCAATGCCAAATCT
CAGCTAGTAGATTCAGTTTAAAGGtttaaacattttgattttgacttggT
CTCTTTGTTTTAGATTTATTACTCATTTAATGAAACGAATTGAGGTTGGA
CCAGTTCGTGGAATTTCAATCAAATTGCAAGAAGAAGAACGTGAAAGAAG
AGATAACTATGTTCCAGAGACCTCTGCTTTGGAGCAAGATATGATTGAGG
TTGACCCAGACACCAAAGAAATGTTGAAGATCTTGgacTTCGCTAACATT
CCAAACTTGCAAGTGACGCAACCATTGACGAGCACATCAGGTTATAAGAA
AATGTAAATTAATAAATTCCTGAAAAGGGCAGCGAAAAAACCAATTGTTT
TATTTGTGTCTTGCCCTTCACATCCGTCTTTCTATCTTATTCGagcatga
aataaaaaatagagtTAACTCTTTTTGTTCTATTACGAACTGCTCCCTCT
ATTTTATAAGAgtgatttttttcgtgccttgcgtgccttcgtgcccttcg
tgccttttgaaaaaaag Run BLAST on NCBI transcript from alignment at scaffold_48:335725..340630+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068131 ID=TCONS_00068131|Name=TCONS_00068131|organism=Clytia hemisphaerica|type=transcript|length=4906bp|location=Sequence derived from alignment at scaffold_48:335725..340630+ (Clytia hemisphaerica)
CTGCTTTGGCTCATAcccataattttttttaaagaaaattataatGCTAT
AATGTACAAATGATGAAGTTATACTTGTGGGAATCTCTCTGAAATTCTGA
TGATAACCTTGCAAGTTTCTGATGTATTTGAAAGCAAGAGTGTATAGAAG
TTTCTGGAAAGGTAGGCCCAAATCTTGAATAGATCGCATGTGGCCAATAA
GTAAATTCCATAATTTGATACTGGAAGTTTTTTACCATGGAAACTACCAA
TAGTTCATAATTATTATATGACCCATTTTTAAGAATTCAATGCCAAATCT
CAGCTAGTAGATTCAGTTTAAAGGtttaaacattttgattttgacttggT
CTCTTTGTTTTAGATTTATTACTCATTTAATGAAACGAATTGAGGTTGGA
CCAGTTCGTGGAATTTCAATCAAATTGCAAGAAGAAGAACGTGAAAGAAG
AGATAACTATGTTCCAGAGGTAATTAATATTGTTAAgctaaatttttttc
agactaattaaatagttttaaagaattttgaaaattaaagcaGACTTAGA
ATGTGACTTTAAGATCTCGAGAAAAAATCTTACACATACTTCTGAATATG
CTATTGTTCAATGCTACTTTGAGTAAACAAGCATTTTTATAAGAGAGATT
CTCTAACAGATTTTTTTGCTCTCTTAGACTCAGTTTTGAACAAGCAAAAC
ATAGGGACTAAAATAGATTTTGGTTATTCTTGCCTTTTATAAGTTACTCA
AAAACTATTGCgtccttttttcaaatttttaccctttttaaCAACTATTT
TcaacaagaaataaaaaaaacacaaagataTATTTGTTGGTCATgtgatt
gaaaatttcaaagtttaagCTATGtcccaatcaaaagttacaaccTCATT
TGTCCAAGCTATTATTTTGCACAATGAAAAAGTCATGTTAATTGATACTT
TTTTCCCTATTTTACAGACCTCTGCTTTGGAGCAAGATATGATTGAGGTT
GACCCAGACACCAAAGAAATGTTGAAGATCTTGGTATGTTACTTTCATTG
TATTTAGTGTCAAGCTGTCTTAAATAGTCGGGACCCCTCTTTCTATGAGA
GGAATTGAACTTTTCAAGGAAGGCTTTTGTAGGGGATATAACTTTTTCCA
ACTAGAATAGGGAGTGATTTGAGCTTAAAGGTGGGTGCGGAAAAGGGTCT
gacccccttcttggcatcctcTTTAAAAAATGCTTATCCCCCAagaattt
tggacaaaaatagctaacaaatttatgtgaaatatctttagagagagaaa
gcgaaatagtaaacttctttcttctttttgactcgaactactctaacaga
aaacttctTTTCATGAAGACCAAGTTTCATAACAGTGATTGGAAATAATC
TGCAATATATATATGTAATCTACCTTGCTATTCCTCTTTTTATGAAACTT
TCTGACCcctcttcttcaattttcagaagGTGTcatctcccccccccccc
ttaagaaagggggaaCAAACTATGGGAGTCAAATAATGGGAGTCAAATAA
TGGTTGGGGGCCTAGcaatatattttggccaaaatatGCATCATCTCATA
TTTGCCAAAGAATATTGTAATTTGTGAACAAAAAGTCAatataaaaacta
aatttttttgccttagGTACTACAACTTACAccatagtgtccttcagggt
ctcttccccccatgcctagaatgtaAATTTCCCATTCCCCCCTcattttt
cctccaaaaaattctctgtccccccccctcaagcataaaggtagttctaa
ttcaagaataaatggaaaggatggttgTTTTTAAATCGTAATATTGCTGG
TTGAAATAAATGATCTTCATATTCTTGATcacaaccacagatatctgtaa
agcccgaagggctagataggcaactttaagctttctccagcaaaaaaaag
tgaagcaaaaatttgactttttaaattttgtgNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCcccccccc
catgcctagaatgaaaattttccattccatTTGCGTgcatattttaacat
tttgtaaACCGCGTCCTTTGGTAGCACAGAATTAGCCTTTTCTGTAGGAT
ATTACATTACAAAGGTCGATAAAGTGATGGTACAAGTACATCTACACTAC
ATTTGTGGGCTATAATTTTAAGTTCATAAGAACTAGAACTTTATGTCCCA
AATTGGTACTGTGCTCGACAATTTTCATAGCAAATTCGCGTTTTTCCTCt
acatttaaaggttttgttttgattgaaagttcttagatgctgatgtagta
aaaacaagtgactagaaaaaggttttgaaaaatgaaaatacattgaataa
aaaaacattcctcaaacAAAGGGACTTACTGATACTtatttgaatgttct
tatgtttataataaatagaacgtttttatcttataatcaaaacattcgat
tttaaatttgctcgaaatcaactttgctatttttttgtttacaaaaacaa
tagaatgtgaTGTCACATCTCGAAACATATTTCGAACATCTCGAAACATA
TTTtcgatctttcacttgtttgcagaatatcgttgcgtaaaaaaaaagct
ttaatttttctgactcagcatgaagacactgcccaaaataagctcctttt
attcccgTAGAAAACCATTAAGGGAAACTAGTCTTGTCATTCCTTATTAT
TGTTTCAAGATCCTCAAATGTTGCAAGCATTATTTCCATAGGCGGTCACA
ATCTTTGCAATTTTAAGCTTCTGCACTCAAGGTTCGGACATATCTTGGAA
CGGATAGGATTTTAGAATAATCTCCAAGCACCTCAGAAACTCATTTTGAT
TACTCTATAATGTTAAATATAATGGTGTTGAATCGCTTTCTCTCACTTTC
ATCAAAATTGTGTAGGCTCCATTTGTGTTTCATTCTAACCCTTGATTCTG
TGTGAACCCTGCTCTATTTTCAGGCCATCATTTTATCGTTTCTTAAACTC
TCTGGTTAAACAGCGTAAAGTACAAAGAGTAGGCTTGAATAGGTGGTACT
CGCTAACAAGTTCGGGGTTTGAGATGGCTTAAGATGTCAGTCTTTATTGT
CGTTCTTTGACGTTATTTCTCACAGGGTATTGGGTCATTACCAATTTGGG
TCTGGGTTGGACTAGATAGTCACTATTTAAGGACACTCGTACCCAGTGGC
TAAACCTTAACGTTCTCTCAGCGAAAACCAACATCGTAATTAGCTAATTA
AGATCGTACAGTATAGAGGATTCTGGcatgtagatttatcagaattagac
gattttttgtttattttgatgcagTCAttctttgcaaaatataggagaaa
aacaattttatataatagcttaatattttcagtttcagttaagccgtttt
tctaaaattttcacagcatattccatacatgaatggaaccaTTTCCAAAA
GATGTTGGCTTTCAGAAACTTAAGAAGtcgttaaatcaaaattgtaactt
tgaaagtttttaaattttcagtttggactttgtatCATCGataatcttga
aatattttataaaaattattaattttacatccatcgggtcacgtaaattt
aagggaaaatttATGTTTATAGTTTCTCCACCTATTACGACTTGGCTTAT
TTAACTGCACCTActttttgggggccccaaacctgttTTAACAACCGGGG
GTATACtgtattttatcaaacaaattcatGCCgaaaaccctcttaatcgc
atttccaaactatggtcaaaatttcgtATTCATATCTGAAAGGGATCTCG
AGAAAttactaaaattgcaaacctagGCTTTGGGAGCTAACAGCTACCTA
TCTTTAGGcgattgaaaaattgaaaattttgaaaaagaactttcgGGAAA
TATAGTAGAAATGTTATAACCTCTAGATAtgagagaaattttagatttga
tcgacgttttgggggccacatactgtacacGCCCGTCTTTCTATCTTGTT
CGAgcgttaaaaaaaaaagagttgacTAGCTTTTTGTTCTATTACATTAC
ATGGAGCTAGCTGTGTGACCTCAGTCAGAGAAAGGTTCATTCCGAAGAGT
TAAAAAAATCGGACTTCTGCattaacacgcatgcgtaatttgtcgttctt
ttagaccacatatatagttaattcccgtgataaacaatcAGGAATGAATC
GGTAGGGGTGGTTCAGTCacttttcggtcggggttgtggatggccaTGGT
TGTGGACTTTTTACTCTTTCTTTTGaccttttcgatatttttgaattttg
atcaTTTCGATCTTATCAGtgagggtcagggttggagctcgaaacataAC
GTCATTATTTGGATGATCTGTAAAGTGTAGAAGAGGCTTTCTGGGGGGAA
TTGTATACTCTTCGGAATAGGACCTTTCTTCCCCTGTAACAGTCATGAAT
gcatgattttttcttttttttcaggacTTCGCTAACATTCCAAACTTGCA
AGTGACGCAACCATTGACGAGCACATCAGGTTATAAGAAAATGTAAATTA
ATAAATTCCTGAAAAGGGCAGCGAAAAAACCAATTGTTTTATTTGTGTCT
TGCCCTTCACATCCGTCTTTCTATCTTATTCGagcatgaaataaaaaata
gagtTAACTCTTTTTGTTCTATTACGAACTGCTCCCTCTATTTTATAAGA
gtgatttttttcgtgccttgcgtgccttcgtgcccttcgtgccttttgaa
aaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068131-exon-scaffold_48-1491911889:335725..336193 | TCONS_00068131-exon-scaffold_48-1491911889:335725..336193 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1510915933:335725..336193 | TCONS_00068131-exon-scaffold_48-1510915933:335725..336193 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1575043694:335725..336193 | TCONS_00068131-exon-scaffold_48-1575043694:335725..336193 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1491911889:336692..336757 | TCONS_00068131-exon-scaffold_48-1491911889:336692..336757 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1510915933:336692..336757 | TCONS_00068131-exon-scaffold_48-1510915933:336692..336757 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1575043694:336692..336757 | TCONS_00068131-exon-scaffold_48-1575043694:336692..336757 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1491911889:340349..340630 | TCONS_00068131-exon-scaffold_48-1491911889:340349..340630 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1510915933:340349..340630 | TCONS_00068131-exon-scaffold_48-1510915933:340349..340630 | Clytia hemisphaerica | exon |
| TCONS_00068131-exon-scaffold_48-1575043694:340349..340630 | TCONS_00068131-exon-scaffold_48-1575043694:340349..340630 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:335725..340630 + |
Blast
BLAST of TCONS_00068131 vs. Swiss-Prot (Human)
Match: RS17 (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 1.658e-34 Identity = 57/70 (81.43%), Postives = 66/70 (94.29%), Query Frame = 2
Query: 365 FITHLMKRIEVGPVRGISIKLQEEERERRDNYVPETSALEQDMIEVDPDTKEMLKILDFANIPNLQVTQP 574
++THLMKRI+ GPVRGISIKLQEEERERRDNYVPE SAL+Q++IEVDPDTKEMLK+LDF ++ NLQVTQP
Sbjct: 53 YVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
The following BLAST results are available for this feature:
|
