TCONS_00068121 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068121
Unique NameTCONS_00068121
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068121 ID=TCONS_00068121|Name=TCONS_00068121|organism=Clytia hemisphaerica|type=transcript|length=2797bp
ATACAGTGATGACGAGAGTGAAGTAGATGGGCTTACATCAGACTATTACG
ATGGAATaccatttgaaaaaagaaacaagGCAAACTATGAAAGCCTTTTT
AATATGAGGGACATTGAAAGAAACGCAGCAATAGAAGACAATAAGCCAAA
GACGGAAGTGATGGTGAAGAGAGCCAAGGTGGATGATGGTGGTGAAAATG
GTCCTTTTTCATGTGGCTTTGAAACAGATTGcacgaaatattttcaattc
gtCGGAACAAAACTACAGTGGAAGAAAAGCACTCGAATTCCTGATCGGAA
AAGTTCACATGGTGCATCCATGGAGGTGGACGTCAAGAAGACGAACACGA
GAAAAGATCGTGCTTCCATGTCGTACAAATTCAACGTACGTCACGCGGCA
CAATGTAATGAGTTCTACTACAACATGTTCGACGAGGAAGGATGTGACGT
CGTCAGATTGTTGGTCACCATGCAATGTGACGGAGAAAACAAGCCAACTG
AATTGTTCAGAAAAAGTTGGAATGAAAAGGGTGGTTGGAATCGTGTGTTG
ATGAATATCAAAAAAACACCAGGAACTATTTGCACTATCACATGGCGAGC
ATCTCAAAGTTTGTCACCAGAAGGCAGGTTGAATTTGGATGACATCACAA
TGTACAACCGCGCATGTCCAAAACCAAATGAAGTGGAGATTCCAAGTGCA
GCTAGTTGTACACTGGAAGGGAACACGTGTGAATGGAAGGAGACTGGGCT
CAAGTGGAGTTACTCCAATAAAACCACGCCTACTCTTTACACTGGTCCTG
ATCTCTACTATGGAAAGAAAGTCGGACCTAAATATGCTTTCCTTGAGGCA
AGTGGAAGCAACTTCCCATCCGTCAAAGGTGTATTGACAAGTCGCAAGTT
GAAGGGAGACACTGACAACTGTTTCCGAATGATGGCTTACATGTATGGTG
AGGATTTGGGTACACTACAAGTGTCATTCAAAAGTCCAAATGTCACCGAT
AAAGTGGTGTATGAGAGGAAAGGCGATCAAGGCAAAAGATGGTTCGAAGC
TTTCGTAACCATTCCAGCTAATACTGAAACCCAGATCGAAATCAAAGGGG
TGACAGGGACTGGACCTCGTTCTGATATTGCCATTGATGACATTCTGGTT
GAACCTGGAAATTGTGATGAGCAAGGAGAGCTTGTTGGGTGTTCATATGA
TGTTGCTGGTTCAAACGATCTATGCCACTTCACTGGAAACCCAAACTGTG
GAGAGGTTGAAATCAATATCCCTAATCTTGGTGAGGCCAAGCAGAATCGT
TTGGTACAAATtataccctaccaagccaaagattttgaaatttcatttga
tGTTCAACCTGGCGATAAATCTAGCGGTTACGCAAGTTTAGTACACTTGA
CAACTGGATCAGATTGTTGTGGAAGGGGTTCACGCCATCCAGCCATTTAT
TTCCATCCCAACACACTGAGAGTGATGGTGTGTACGACCGAAGCTGTCGG
AGGTCATAGATGTATCATAATGCGAAGAGATATCCCCACTGGTCAAACAA
GTCATGTTCAATATACTTTCAAAGAAAACCCATCGACACCAGGCCGCGGA
GTTTGTGAGTTATTTGTGAACGGACAAAAGATTGGAGCTCTTAATGTGTA
CACAGCTGAGTTCCCCAATGTCAAGATATTCTCTGGAGACATACAAAAGC
AACCAGTTAACAACAAACACATTATCACTAATTTCTTCTACAAGAATACA
GCAAAAGTGGAATCATGCACGAAAACATGCACTGcaaacgtcatcaaaac
aaaggtcaaCAAAAAGGAAGTCACTGTCGCTAAATACAACAAAACGCAAT
GTCCGGTATCTTTCGAAAATGAAATCGAAATCCCACTGTCCATTCGCAAC
GGACGTTTGGCCTGCATGGCGTTCGATTATCTGATTGGACAAAACAAGAA
GGGCAATGCTGAATGTGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCA
ACAGATGGGTGGCTAAACCTGTTCACACGTTCAAAGATAAATTCGAGTTC
AATGTATGGATGCCCTTCAGACGTGATTTTGATGTCATCTTGGAAGAAAA
CAAGAAATACAGGATTGGTGTGATTCACAAATTGACCGATCAATGTCCAG
AGATTTCTTTTGCCAACATGAAACTCTTGGATGGACCTTGCGCTTTACCT
GAAACTCATCAAGAACACTGATCAATGGAACACGGTACATCACTGAAACT
GATGTGAGCAGGATCGTAAATGGTAAATGGAAAATGGAAAACTTATAACT
TAAATAGGATTAGAAACTTATAATCGTAATAGTGTTTCAGCGAGTGATAA
AAGTAGTTGTTTACTATAAGAATCATAAGCCAATGCCACGagtttcaaaa
ttatttcaaaaacattaacCTTCCCTtcgagatttttcaaaaaacaggCC
CTGCGGAAGCGGaaagactggggagacttcagccacTTTTgattaaatta
gattttttttctcaaatttctagcgaatttaattttattatgagccttca
gcctccccacttttacggtcgttccgccgggcctgaaaAAGATATTTagg
gaattaatttttcttttttcgtgGTTTTACAACCCTAACACAGGCTTAAA
AATCGGAACGGTGTTCGCCCTGAAATTATTCATTCGACTATTCATTatat
catagtataagaaagccgcggctggaatatgtaccgcattgtcttttcag
ttaattgctgttccatctctgtctccgagctttataagaacatcgag
Run BLAST on NCBI

transcript from alignment at scaffold_48:172617..182013+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068121 ID=TCONS_00068121|Name=TCONS_00068121|organism=Clytia hemisphaerica|type=transcript|length=9397bp|location=Sequence derived from alignment at scaffold_48:172617..182013+ (Clytia hemisphaerica)
ATACAGTGATGACGAGAGTGAAGGTAAAAACATCTACTTTCCTTTTTCTA
TTAAAAATTGGATCAAAAACTCTAAGTCAATGACCAAGAACAATTCCAAA
AATAAAGAAGCGATCGAGAAAACTACACCCTACAAAGACTGAATATACTG
TAGATCGGAGCTCCGTTGAATGTTTTCCTGGTCGCTTAAGAGAATTTTTC
GGCTTCCTTCCTTTTCGTAACTCAACTCTCACCGTCCCTTCGAAGTTTCA
GTTATGGATATTCGACCGCCATTTCAAATATCACCTTGAAAAAAGTGTGA
GGTCAAAAGTTTATGTATTCAGGAGTAAGCCACTTTGGCTGCAAGTTTTT
AGCTCAACCTAACGATGATAAGTTCTTATTGATTTCTTTTTACAAGTAGA
TGGGCTTACATCAGACTATTACGATGGAATaccatttgaaaaaagaaaca
agGCAAACTATGAAAGCCGTAAGTAATTTACGCAGTGCTAAGGGTTTGCG
ATTGTAACGTCCCAGTTTCTTCATATGGTTTGAAGTTTCAAGCATCGGGT
GTTTTGATTAAGGTTGAAGGGCGTCTGCTTACCGAATTTTGCAACGCTAT
GCATTTAAAATCGTTGCTTTTAAAAAGCATTCTATAATCAAACTCGGACA
TTTTACCGAGAGTGTCAAGCATCTTCCAATGAAAGATTTCTTTGTAAATG
AATCATCTTTTCCATTTCATTCAGTTTTTAATATGAGGGACATTGAAAGA
AACGCAGGTGAGTCAAAATTCTTCCGTATAATTATTTCctttatttcctt
tttcaacaaccctcgaattttcaaatgaaacaatTTACCGCTACTTATCT
GAGGCCGAAAATATTACATGAAAGTGCATTAAATTTtgtattgaaaacaa
atttatcaaacaaTTTCTGCAAGGTCTTTCGTAGTTTATTATATCATCAT
TCCTAAAACATACCGGGAACATACCATTAAAAACATCAATTCTAAAAGAA
CCTTTGTCCTCAAATTAAACAAGAGCAGGATAAAGAGGCTAAAGATGCCA
AAAAAAAGAGAGcttaaagaaaacttttttgattaagCAATAGAAGACAA
TAAGCCAAAGACGGAAGTGATGGTGAAGAGAGCCAAGGTGGATGATGGTG
GTGAAAATGGTCCTTTTTGTAAGTTGACTTCTTGTTCATTTTATGTATCG
GTATCAAGGTATGTTTGTTAGGTGAGCAAAGATATATGACTTCATCTATA
TCAGAACACACTACGAAGCCTGAATACTGTCCATAGATATCTAACACTAG
GCGCAGCTACTCTGTTCCTAGATGAAGAAAAACAATATGCAATCTTAGCC
GAGTTGAcgtaaatcaatcaatcaatcaatcaatcacatTACAATATATT
CCTGCCGTTTCAGTTTCTAATTGCCTGTACCATACTGTGGTCTACTCAGC
AAaatggcgcattattttgcttcaactgGGGTCAACTGGCATCTCTTGAG
AATGACAGAGTAGCTTTATCTTTTGTTTAGTATAAGATAACTGTGGTACT
GTACTGCACTGACAGAAAGGCCAAAAAGGACATTTATTTTGGGATTTCTT
GATgataaatttttctttcataatCTACCTATGACAGTATCCTCATAAGT
AAGACTACAGTCCCACTCCACCCTCTTTATATTCACGAGCCTTTAGATGG
ATATTTCTTTTCCAAATACTCTTGCAGCATGTGGCTTTGAAACAGATTGc
acgaaatattttcaattcgtCGGAACAAAACTACAGTGGAAGAAAAGCAC
TCGAATTCCTGATCGGAAAAGTTCACATGGTGCATCCATGGAGGTGGACG
TCAAGAAGGTACGCATTGTGAAATACCCAGCCACGTCCCCTGTGTACTAT
CGGCTTTTTATGCTTGCTGGTAGCgccatcagtaacgtaaataaagcctg
ggatataCAGGCACGAGGTTCTGTAATACCATATAGGTATCGCGGGGTTG
GGGATTTTAAGTACGGGTAAACGACAATTATTCGTGgacgttaattttta
tttttgggcgTTGATTTTTATTTGTGGGCGTTAGTTTGAACACCAGTAAA
ACAGTggaataaaatagaaaaaaaaatagaagagCTTTTAACTTGCTTTG
CCGGGTGTTTGAATGACTGTTTATAATTAAATTATTCGCTGTTCAGCGGA
ATTTACCAAACTAGAACTCTTTTCAGTCCTCGAGAATAACTAAAGATAGT
TCAGCCTGAAAGTCTATACACTTGACAAACCCGTCAAATATAAATATCTT
ATTTCGGAGTGGCCAGAAAATCATATTTTTACACATTCAAAATCTGTTGA
ATACCTTGTGGAATGTACAATAAAGAATCTTGCAATAATACACATATAAT
ACACACTTTACTTTTTCAGACGAACACGAGAAAAGATCGTGCTTCCATGT
CGTACAAATTCAACGTACGTCACGCGGCACAATGTAATGAGTTCTACTAC
AACATGTTCGACGAGGAAGGATGTGACGTCGTCAGATTGTTGGTCACCAT
GCAATGTGACGGAGAAAACAAGCCAACTGAATTGTTCAGAAAAAGTTGGA
ATGAAAAGGGTGGTTGGAATCGTGTGTTGATGAATATCAAAAAAACACCA
GGAACTATTTGCACTGTGAGTTGAGTGTTTATACTAAGAAAGAGTGCTAG
CATCTATACAGCGTGGAGTGCAccatttaaaatctttttggTCTGAAGCC
TATATTACTATAGCCCCATCGCGGGTACCATCGACTTCGCTAATTCGAGC
AAATGGGGAATCTAATCACTTTCGACTTACAAGATATATCCCAAATATAG
AAATTTATTATCATATTGGTTATTAATAAGACTGTGTtcgagttttcaaa
aatatccaGGTGGTGCTTAAACAAATCAAAGGAATAGTAATTTCGTTAGC
AGCAAAACGTATTGTAACCACACCAAACCAACTTCGTTTAGATCACATGG
CGAGCATCTCAAAGTTTGTCACCAGAAGGCAGGTTGAATTTGGATGACAT
CACAATGTACAACCGCGCATGTCCAAAACCAAATGAAGTGGAGATTCCAA
GTAGGTTAATGTACAACAATACCAATACAATCTCATCTCCACTGTAAACC
TTCTGATTTATGATGGGGCGtataaaagtttatttgatGACATATAGTAG
ATATAAAAAGACTAAAACACCCAAAATCTCTCAAGGATTATGAGTTTGTA
AAAGTTTATTGTCTTGGCTCCATTCTATAAGACTCGActttaatttgaaa
tattacgcAGAAAAAATGCAAGgtcaaaagtgttttcggtACTTTGAGTT
CTAAACCCTTCCTGTACCGGTGTCGCTATGCCGACACGGGGTATGGGAAA
AAGgcgaattttgattttgaaatcgatttctttttttaaggttACACAAG
TATATTACAAGTACTTAATGAATTAACAGGATCgaatttcatgaaaataa
ctttattgaaattttgaccgtttttggACAATATTCTTATTAAGTCATTA
GGACAAGAAAGCACCAAATTTGTATATTGTACCAGATTGTATGTCTTTCC
AGGGGtgggggcactccaggtaagtgacctaccggacgtgcgacccttaa
gggtaggtttttttggactttggaaagcgcaatgtaagggttgatttgtg
agcaagtgggaaaaagggcactgtaagggtgtaaaatttgagtaaatacc
aaattttgaggtaaaatttgagaaatttcaaaaaattttcgaaaaattgc
actataaaggtcgattttcagccaaatttttcctgcactgtaagggtccg
attttagagacttgatttttggccgaacgtacggtcgttttcaaaatcga
gtgcccccccggaTGTCTTCCAAAGGAACCCATCGTTTCATTCACAAATA
GAACAGGATACACTAGACTTTTACGATGAAATACCACATGAAAAAGAAAC
AAggcaaaatttacattttttgatcAGATTACACAGTGCAAAGGAGGCAT
GATCATAATCCGccaaattcatttttattttatacccAAGACAGTTTGTG
AAATATAATATGGTTAAATACACTTGTAGCTTGTTTGATTGTTAGACTGG
TCCACATTTCGCCATTTGTTAATCAAACCTTTCTCAAAGAACCCCCTTAT
ATTTTTAGCTTTGGTTGGAAAACGTCTTGGGTGACATCAGCATAGTTCGG
ATTCGACAATATTGTAATGGAAGGATTTTGACCACCCTCCTTgtcattca
atatcaaaaaagtccaaaaaaagatcattttgacATTAATACCTCTTCCA
ACAACAGTGAAATCATCCTAAAAGGTATTCTTTCGATTCATTTCAGGTGC
AGCTAGTTGTACACTGGAAGGGAACACGTGTGAATGGAAGGAGACTGGGC
TCAAGTGGAGTTACTCCAATAAAACCACGCCTACTCTTTACACTGGTCCT
GATCTCTACTATGGAAAGAAAGTCGGACGTAAGTTGGATAATATTGAAGA
CATGTACACATTTTttcatataagaacaaactaagaaCATAAGCCTTTGA
TTGCCAAAatattaggaacattttaaggctttgcagaccataaaatacct
attttcttaggagaattgacaaaaatactcataaaatggtgaaaataaga
acatgttaagaacattttgaggctttaaaatcaaaaagttaagaacatcc
aaaggttctaacaattttggatgttcttacaatAAAAACGTGTAACCTGA
TGAACCGATACCTATCAGTAACCCACTTGGATCTAAAACACATTGGGTTT
TGGACTCGATCACTGAAGTATACAAATCTTTAACACCACTGTTTTTATTT
CACACACTGTATCAATGTATCGCAAACATAAGAAATACTGGTAAAAACTT
TCCATACCAAACAAACTTATTTAAAATGTTTCTCACATTTTACTACAGCT
AAATATGCTTTCCTTGAGGCAAGTGGAAGCAACTTCCCATCCGTCAAAGG
TGTATTGACAAGTCGCAAGTTGAAGGGAGACACTGACAACTGTTTCCGAA
TGATGGCTTACATGTATGGTGAGGATTTGGGTACACTACAAGTGTCATTC
AAAAGTCCAAATGTCACCGATAAAGTGGTGTATGAGAGGAAAGGCGATCA
AGGCAAAAGATGGTTCGAAGCTTTCGTAACCATTCCAGCTAATACTGAAA
CCCAGGTATCATTACTATGAAACTCTATATTCTTAACAGAAAACAGTGTT
AAATTGGTTTGTTGGTTACAAAGAAAGTGGGTAAAAGAATTTTTCACCCA
TAGCTACAGACGATACTTTAATAGACATTCTCCTATTGCTTATAGATCGA
AATCAAAGGGGTGACAGGGACTGGACCTCGTTCTGATATTGCCATTGATG
ACATTCTGGTTGAACCTGGAAATTGTGATGAGCAAGGAGAGCTTGTTGGG
TGTTCATATGATGTTGCTGGTTCAAACGATCTATGCCACTTCACTGGAAA
CCCAAACTGTGGAGAGGTTGAAATCAATATCCCTAGTAAGCTCATAGAGT
caatttaaagttttctttccAAACTTCTCAATGTGCAACTTTTTTGCAAT
ACTACAGTTCCATCGAAAACCTGAGATATCTGGGTATGTAGATTTCTTGG
AAAGCGATGATCAAGTTTAATGAATATAACAACCATAGTGTCGTTGGACA
GCTCTGCTACAAATCTACAAGAAGCAGCGGACTTCTTTTCCTTCTATCTT
TTATGGGGTTAATTACCAACAGTGCACAGTGCGACAACCATTGAGAACGT
AACTAAGGTTTGAAACATTATGTTCTTATCATCAATTCACAGATCTTGGT
GAGGCCAAGCAGAATCGTTTGGTACAAATtataccctaccaagccaaaga
ttttgaaatttcatttgatGTTCAACCTGGCGATAAATCTAGCGGTTACG
CAAGTTTAGTACACTTGACAACTGGATCAGATTGTTGTGGAAGGGGTTTG
TATTCATTACAACGATAAACAATTTTCCCGATCGCAGGACATACCCATGG
TTATTAGTTTACCCCATCTTTCGTATCAGTTTTACAATTTATCTCTTATG
TCCTGTACACGACTCTTTCAAAGCAGCCCCTCCTCATTCTGAAAATGCAT
GAAATATGAACAATCAACGACTAGTATAATTATGCGTTCTTTACTTGTAG
GTTCACGCCATCCAGCCATTTATTTCCATCCCAACACACTGAGAGTGATG
GTGTGTACGACCGAAGCTGTCGGAGGTCATAGATGTATCATAATGCCAAG
AGATATCCCCACTGGTCAAACAAGTCATGTTCAATATACTTTCAAAGAAA
ACGTAAGACCTTAAGGATATCTGTACTTAAGTGTTTTTGAAGTATAGAAA
TTAGATCTAATAATTATATAGGAAAGGGGTCAATATGAAATTGATAACAC
GAGGTTCGTAGATAATTCGCCGTTTGCAGTGTAAAAATTAAACCCCTGAT
TACAATTTCATAGGCTCATCATCTCAATTTTTCATCATAGCCATCGACAC
CAGGCCGCGGAGTTTGTGAGTTATTTGTGAACGGACAAAAGATTGGAGCT
CTTAATGTGTACACAGCTGAGTTCCCCAACGTCAAGATATTCTCTGGAGA
CATACAAAAGCAACCAGTTAACAACAAACACATTATCACTAATTTCTTCT
ACAAGAATACAGGTAAGGCTGGTCATCGCAAAGACATAGTGTTTTTTCTT
GAGTTGAAAAAAATGTCCCCTGAGATAAGCTTCGAAAAAAGACCAACTCT
ACCGACTCAAATTCTAATCGTATTCAATTCAAATGCAAATGTTGAAGAAC
TTTGTAATAGAGGGAAGGGTGTTGCCTGACATAATGAGATTCAGAAACCT
AAACGTGTACCTGTACTGTGTTATGAATCGCAGCGATGTATATTTgatga
agatgatgattttctacGAGGTCAATAAATTTGTCAATGTAAACTTTCGA
ATCTCTCTTTCTCTCATCAGCAAAAGTGGAATCATGCACGAAGACATGCA
CTGcaaacgtcatcaaaacaaaNTACTTGTAGGTTCACGCCATCCAGCCA
TTTATTTCCATCCCAACACACTGAGAGTGATGGTGTGTACGACCGAAGCT
GTCGGAGGTCATAGATGTATCATAATGCGAAGAGATATCCCCACTGGTCA
AACAAGTCATGTTCAATATACTTTCAAAGAAAACGTAAGACCTTAAGGAT
ATCTGTACTTAAGTGTTTTTGAAGTATAGAAATTAGATCTAATAATTATA
TAGGAAAGGGGTCAATATGAAATTGATAACACGAGGTTCGTAGATAATTC
GCCGTTTGCAGTGTAAAAATTAAACCCCTGATTACAATTTCATAGGCTCA
TCATCTCAATTTTTCATCATAGCCATCGACACCAGGCCGCGGAGTTTGTG
AGTTATTTGTGAACGGACAAAAGATTGGAGCTCTTAATGTGTACACAGCT
GAGTTCCCCAATGTCAAGATATTCTCTGGAGACATACAAAAGCAACCAGT
TAACAACAAACACATTATCACTAATTTCTTCTACAAGAATACAGGTAAGG
CTGGTCATCGCAAAGACATAGTGTTTTTTCTTGAGTTGAAAAAAATGTCC
CCTGAGATAAGCTTCGAAAAAAGACCAACTCTACCGACTCAAATTCTAAT
CGTATTCAATTCAAATGCAAATGTTGAAGAACTTTGTAATAGAGGGAAGG
GTGTTGCCTGACATAATGAGATTCAGAAACCTAAACGTGTACCTGTACTG
TGTTATGAATCGCAGCGATGTATATTTgatgaagatgatgattttctacG
AGGTCAATAAATTTGTCAATGTAAACTTTCGAATCTCTCTTTCTCTCATC
AGCAAAAGTGGAATCATGCACGAAAACATGCACTGcaaacgtcatcaaaa
caaaggtcaaCAAAAAGGAAGGTGAGAGAACAGGTTTCCCTTTACTTTGG
AGCTACATGTTATATTGGTGCTCGAgaattcaaaatgaaataaagatACT
AAATTCAAATTGCGCATTTCCATGAGCTTagatttgaattgaatttatGT
GATTCGATCCAGGGTGATAGATGTTGtaaagaaagtttcaataatTCTGC
ACCATTTTCGTTTATAGTCACTGTCGCTAAATACAACAAAACGCAATGTC
CGGTATCTTTCGAAAATGAAATCGAAATCCCACTGTCCATTCGCAACGGA
CGTTTGGCCTGCATGGCGTTCGATTATCTGATTGGACAAAACAAGAAGGG
CAATGCTGAATGTGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCAACA
GATGGGTGGCTAAACCTGTTCACACGTTCAAAGATAAATTCGAGTTCAAT
GTATGGATGCCCTTCAGACGTGATTTTGATGTCATCTTGGAAGAAAACAA
GAAATACAGGGTGAGTGCGGACCGATATATAATTATCTCCATTTGCATAT
ATTCGCTTGTTTAGACATAAGAACAATATTCaacttaatatttttatttc
tatattCAATCTTAGTAACGGAGGTCTGTAATAGAATTGACTTTTCTCCC
TTCCATGCATCTTTGAATTATACCTCTCGACCGAAGCTATTCATCAAATG
ACTTTTTCATTAGATTGGTGTGATTCACAAATTGACCGATCAATGTCCAG
AGATTTCTTTTGCCAACATGAAACTCTTGGATGGACCTTGCGCTTTACCT
GAAACTCATCAAGAACACTGATCAATGGAACACGGTACATCACTGAAACT
GATGTGAGCAGGATCGTAAATGGTAAATGGAAAATGGAAAACTTATAACT
TAAATAGGATTAGAAACTTATAATCGTAATAGTGTTTCAGCGAGTGATAA
AAGTAGTTGTTTACTATAAGAATCATAAGCCAATGCCACGagtttcaaaa
ttatttcaaaaacattaacCTTCCCTtcgagatttttcaaaaaacaggCC
CTGCGGAAGCGGaaagactggggagacttcagccacTTTTgattaaatta
gattttttttctcaaatttctagcgaatttaattttattatgagccttca
gcctccccacttttacggtcgttccgccgggcctgaaaAAGATATTTagg
gaattaatttttcttttttcgtgGTTTTACAACCCTAACACAGGCTTAAA
AATCGGAACGGTGTTCGCCCTGAAATTATTCATTCGACTATTCATTatat
catagtataagaaagccgcggctggaatatgtaccgcattgtcttttcag
ttaattgctgttccatctctgtctccgagctttataagaacatcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042523XLOC_042523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068121-exon-scaffold_48-1491911889:172617..172639TCONS_00068121-exon-scaffold_48-1491911889:172617..172639Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:172617..172639TCONS_00068121-exon-scaffold_48-1510915933:172617..172639Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:172617..172639TCONS_00068121-exon-scaffold_48-1575043694:172617..172639Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:173013..173084TCONS_00068121-exon-scaffold_48-1491911889:173013..173084Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:173013..173084TCONS_00068121-exon-scaffold_48-1510915933:173013..173084Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:173013..173084TCONS_00068121-exon-scaffold_48-1575043694:173013..173084Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:173341..173373TCONS_00068121-exon-scaffold_48-1491911889:173341..173373Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:173341..173373TCONS_00068121-exon-scaffold_48-1510915933:173341..173373Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:173341..173373TCONS_00068121-exon-scaffold_48-1575043694:173341..173373Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:173704..173784TCONS_00068121-exon-scaffold_48-1491911889:173704..173784Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:173704..173784TCONS_00068121-exon-scaffold_48-1510915933:173704..173784Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:173704..173784TCONS_00068121-exon-scaffold_48-1575043694:173704..173784Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:174344..174474TCONS_00068121-exon-scaffold_48-1491911889:174344..174474Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:174344..174474TCONS_00068121-exon-scaffold_48-1510915933:174344..174474Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:174344..174474TCONS_00068121-exon-scaffold_48-1575043694:174344..174474Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:175036..175281TCONS_00068121-exon-scaffold_48-1491911889:175036..175281Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:175036..175281TCONS_00068121-exon-scaffold_48-1510915933:175036..175281Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:175036..175281TCONS_00068121-exon-scaffold_48-1575043694:175036..175281Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:175608..175716TCONS_00068121-exon-scaffold_48-1491911889:175608..175716Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:175608..175716TCONS_00068121-exon-scaffold_48-1510915933:175608..175716Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:175608..175716TCONS_00068121-exon-scaffold_48-1575043694:175608..175716Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:177013..177144TCONS_00068121-exon-scaffold_48-1491911889:177013..177144Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:177013..177144TCONS_00068121-exon-scaffold_48-1510915933:177013..177144Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:177013..177144TCONS_00068121-exon-scaffold_48-1575043694:177013..177144Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:177615..177871TCONS_00068121-exon-scaffold_48-1491911889:177615..177871Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:177615..177871TCONS_00068121-exon-scaffold_48-1510915933:177615..177871Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:177615..177871TCONS_00068121-exon-scaffold_48-1575043694:177615..177871Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:178012..178201TCONS_00068121-exon-scaffold_48-1491911889:178012..178201Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:178012..178201TCONS_00068121-exon-scaffold_48-1510915933:178012..178201Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:178012..178201TCONS_00068121-exon-scaffold_48-1575043694:178012..178201Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:178509..178661TCONS_00068121-exon-scaffold_48-1491911889:178509..178661Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:178509..178661TCONS_00068121-exon-scaffold_48-1510915933:178509..178661Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:178509..178661TCONS_00068121-exon-scaffold_48-1575043694:178509..178661Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:179749..179900TCONS_00068121-exon-scaffold_48-1491911889:179749..179900Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:179749..179900TCONS_00068121-exon-scaffold_48-1510915933:179749..179900Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:179749..179900TCONS_00068121-exon-scaffold_48-1575043694:179749..179900Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:180089..180260TCONS_00068121-exon-scaffold_48-1491911889:180089..180260Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:180089..180260TCONS_00068121-exon-scaffold_48-1510915933:180089..180260Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:180089..180260TCONS_00068121-exon-scaffold_48-1575043694:180089..180260Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:180569..180637TCONS_00068121-exon-scaffold_48-1491911889:180569..180637Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:180569..180637TCONS_00068121-exon-scaffold_48-1510915933:180569..180637Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:180569..180637TCONS_00068121-exon-scaffold_48-1575043694:180569..180637Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:180834..181126TCONS_00068121-exon-scaffold_48-1491911889:180834..181126Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:180834..181126TCONS_00068121-exon-scaffold_48-1510915933:180834..181126Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:180834..181126TCONS_00068121-exon-scaffold_48-1575043694:180834..181126Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1491911889:181330..182013TCONS_00068121-exon-scaffold_48-1491911889:181330..182013Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1510915933:181330..182013TCONS_00068121-exon-scaffold_48-1510915933:181330..182013Clytia hemisphaericaexon
TCONS_00068121-exon-scaffold_48-1575043694:181330..182013TCONS_00068121-exon-scaffold_48-1575043694:181330..182013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:172617..182013 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.930584	0	0	0	0.0171495	0.0719578	1.03032	0.26694	0.00466403	0.00712293	0.506131	0.0994732	0.0295193	0.00176443	0.000724614	0.00178906	1.13367e-08	1.75994e-09	0.00474381	0.00632476	0	0	0	0.644357	0.0762416	0.081707	0	0.0122277	0.603162	0
Blast
[Close]
BLAST of TCONS_00068121 vs. Swiss-Prot (Human)
Match: MAMC2 (MAM domain-containing protein 2 OS=Homo sapiens GN=MAMDC2 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.941e-18
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 2 
Query:  527 KGGWNRVLMNIKKTPGTICTITWRASQSLSPEGRLNLDDITMYNRACPKPNEVEIPSAASCTLEGNTCEW---KETGLKWSYSNKTTPTLYTGPDLYYGKKVGPKYAFLEASGSNFPSVKGVLTSRKLKGDT-DNCFRMMAYMYGEDLGTLQVSFKSPNVTDK-VVYERKGDQGKRWFEAFVTIPANTETQIEIKGVTGTGPRSDIAIDDILVEPGNCDE 1171
            +G W +  +  KK P     +     +S    G + LDDIT+   +C    ++  P    CT E + C +   K     W      TPT YTGP   +   VG  Y ++EAS   +   K  L SR L+G +  +C     +MYG   G L V  K    +++ +++ R+G+Q   W  A +      + QI  + + G   RSDIAIDD+  + G C E
Sbjct:  451 RGVWMQAEITFKK-PMPTKVVFMSLCKSFWDCGLVALDDITIQLGSCSSSEKLP-PPPGECTFEQDECTFTQEKRNRSSWHRRRGETPTSYTGPKGDHTTGVG-YYMYIEASHMVYGQ-KARLLSRPLRGVSGKHCLTFFYHMYGGGTGLLSVYLKKEEDSEESLLWRRRGEQSISWLRALIEYSCERQHQIIFEAIRGVSIRSDIAIDDVKFQAGPCGE 666
The following BLAST results are available for this feature:
BLAST of TCONS_00068121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAMC21.941e-1830.00MAM domain-containing protein 2 OS=Homo sapiens GN... [more]
back to top