TCONS_00068116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068116
Unique NameTCONS_00068116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068116 ID=TCONS_00068116|Name=TCONS_00068116|organism=Clytia hemisphaerica|type=transcript|length=2796bp
ANATACAGTGATGACGAGAGTGAAGATGGGCTTACATCAGACTATTACGA
TGGAATaccatttgaaaaaagaaacaagGCAAACTATGAAAGCCTTTTTA
ATATGAGGGACATTGAAAGAAACGCAGCAATAGAAGACAATAAGCCAAAG
ACGGAAGTGATGGTGAAGAGAGCCAAGGTGGATGATGGTGGTGAAAATGG
TCCTTTTTCATGTGGCTTTGAAACAGATTGcacgaaatattttcaattcg
tCGGAACAAAACTACAGTGGAAGAAAAGCACTCGAATTCCTGATCGGAAA
AGTTCACATGGTGCATCCATGGAGGTGGACGTCAAGAAGACGAACACGAG
AAAAGATCGTGCTTCCATGTCGTACAAATTCAACGTACGTCACGCGGCAC
AATGTAATGAGTTCTACTACAACATGTTCGACGAGGAAGGATGTGACGTC
GTCAGATTGTTGGTCACCATGCAATGTGACGGAGAAAACAAGCCAACTGA
ATTGTTCAGAAAAAGTTGGAATGAAAAGGGTGGTTGGAATCGTGTGTTGA
TGAATATCAAAAAAACACCAGGAACTATTTGCACTATCACATGGCGAGCA
TCTCAAAGTTTGTCACCAGAAGGCAGGTTGAATTTGGATGACATCACAAT
GTACAACCGCGCATGTCCAAAACCAAATGAAGTGGAGATTCCAAGTGCAG
CTAGTTGTACACTGGAAGGGAACACGTGTGAATGGAAGGAGACTGGGCTC
AAGTGGAGTTACTCCAATAAAACCACGCCTACTCTTTACACTGGTCCTGA
TCTCTACTATGGAAAGAAAGTCGGACCTAAATATGCTTTCCTTGAGGCAA
GTGGAAGCAACTTCCCATCCGTCAAAGGTGTATTGACAAGTCGCAAGTTG
AAGGGAGACACTGACAACTGTTTCCGAATGATGGCTTACATGTATGGTGA
GGATTTGGGTACACTACAAGTGTCATTCAAAAGTCCAAATGTCACCGATA
AAGTGGTGTATGAGAGGAAAGGCGATCAAGGCAAAAGATGGTTCGAAGCT
TTCGTAACCATTCCAGCTAATACTGAAACCCAGATCGAAATCAAAGGGGT
GACAGGGACTGGACCTCGTTCTGATATTGCCATTGATGACATTCTGGTTG
AACCTGGAAATTGTGATGAGCAAGGAGAGCTTGTTGGGTGTTCATATGAT
GTTGCTGGTTCAAACGATCTATGCCACTTCACTGGAAACCCAAACTGTGG
AGAGGTTGAAATCAATATCCCTAATCTTGGTGAGGCCAAGCAGAATCGTT
TGGTACAAATtataccctaccaagccaaagattttgaaatttcatttgat
GTTCAACCTGGCGATAAATCTAGCGGTTACGCAAGTTTAGTACACTTGAC
AACTGGATCAGATTGTTGTGGAAGGGGTTCACGCCATCCAGCCATTTATT
TCCATCCCAACACACTGAGAGTGATGGTGTGTACGACCGAAGCTGTCGGA
GGTCATAGATGTATCATAATGCGAAGAGATATCCCCACTGGTCAAACAAG
TCATGTTCAATATACTTTCAAAGAAAACCCATCGACACCAGGCCGCGGAG
TTTGTGAGTTATTTGTGAACGGACAAAAGATTGGAGCTCTTAATGTGTAC
ACAGCTGAGTTCCCCAATGTCAAGATATTCTCTGGAGACATACAAAAGCA
ACCAGTTAACAACAAACACATTATCACTAATTTCTTCTACAAGAATACAG
CAAAAGTGGAATCATGCACGAAAACATGCACTGcaaacgtcatcaaaaca
aaggtcaaCAAAAAGGAAGTCACTGTCGCTAAATACAACAAAACGCAATG
TCCGGTATCTTTCGAAAATGAAATCGAAATCCCACTGTCCATTCGCAACG
GACGTTTGGCCTGCATGGCGTTCGATTATCTGATTGGACAAAACAAGAAG
GGCAATGCTGAATGTGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCAA
CAGATGGGTGGCTAAACCTGTTCACACGTTCAAAGATAAATTCGAGTTCA
ATGTATGGATGCCCTTCAGACGTGATTTTGATGTCATCTTGGAAGAAAAC
AAGAAATACAGGATTGGTGTGATTCACAAATTGACCGATCAATGTCCAGA
GATTTCTTTTGCCAACATGAAACTCTTGGATGGACCTTGCGCTTTACCTG
AAACTCATCAAGAACACTGATCAATGGAACACGGTACATCACTGAAACTG
ATGTGAGCAGGATCGTAAATGGTAAATGGAAAATGGAAAACTTATAACTT
AAATAGGATTAGAAACTTATAATCGTAATAGTGTTTCAGCGAGTGATAAA
AGTAGTTGTTTACTATAAGAATCATAAGCCAATGCCACGagtttcaaaat
tatttcaaaaacattaacCTTCCCTtcgagatttttcaaaaaacaggCCC
TGCGGAAGCGGaaagactggggagacttcagccacTTTTgattaaattag
attttttttctcaaatttctagcgaatttaattttattatgagccttcag
cctccccacttttacggtcgttccgccgggcctgaaaAAGATATTTaggg
aattaatttttcttttttcgtgGTTTTACAACCCTAACACAGGCTTAAAA
ATCGGAACGGTGTTCGCCCTGAAATTATTCATTCGACTATTCATTatatc
atagtataagaaagccgcggctggaatatgtaccgcattgtcttttcagt
taattgctgttccatctctgtctccgagctttataagaacatcgag
Run BLAST on NCBI

transcript from alignment at scaffold_48:172615..182013+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068116 ID=TCONS_00068116|Name=TCONS_00068116|organism=Clytia hemisphaerica|type=transcript|length=9399bp|location=Sequence derived from alignment at scaffold_48:172615..182013+ (Clytia hemisphaerica)
ANATACAGTGATGACGAGAGTGAAGGTAAAAACATCTACTTTCCTTTTTC
TATTAAAAATTGGATCAAAAACTCTAAGTCAATGACCAAGAACAATTCCA
AAAATAAAGAAGCGATCGAGAAAACTACACCCTACAAAGACTGAATATAC
TGTAGATCGGAGCTCCGTTGAATGTTTTCCTGGTCGCTTAAGAGAATTTT
TCGGCTTCCTTCCTTTTCGTAACTCAACTCTCACCGTCCCTTCGAAGTTT
CAGTTATGGATATTCGACCGCCATTTCAAATATCACCTTGAAAAAAGTGT
GAGGTCAAAAGTTTATGTATTCAGGAGTAAGCCACTTTGGCTGCAAGTTT
TTAGCTCAACCTAACGATGATAAGTTCTTATTGATTTCTTTTTACAAGTA
GATGGGCTTACATCAGACTATTACGATGGAATaccatttgaaaaaagaaa
caagGCAAACTATGAAAGCCGTAAGTAATTTACGCAGTGCTAAGGGTTTG
CGATTGTAACGTCCCAGTTTCTTCATATGGTTTGAAGTTTCAAGCATCGG
GTGTTTTGATTAAGGTTGAAGGGCGTCTGCTTACCGAATTTTGCAACGCT
ATGCATTTAAAATCGTTGCTTTTAAAAAGCATTCTATAATCAAACTCGGA
CATTTTACCGAGAGTGTCAAGCATCTTCCAATGAAAGATTTCTTTGTAAA
TGAATCATCTTTTCCATTTCATTCAGTTTTTAATATGAGGGACATTGAAA
GAAACGCAGGTGAGTCAAAATTCTTCCGTATAATTATTTCctttatttcc
tttttcaacaaccctcgaattttcaaatgaaacaatTTACCGCTACTTAT
CTGAGGCCGAAAATATTACATGAAAGTGCATTAAATTTtgtattgaaaac
aaatttatcaaacaaTTTCTGCAAGGTCTTTCGTAGTTTATTATATCATC
ATTCCTAAAACATACCGGGAACATACCATTAAAAACATCAATTCTAAAAG
AACCTTTGTCCTCAAATTAAACAAGAGCAGGATAAAGAGGCTAAAGATGC
CAAAAAAAAGAGAGcttaaagaaaacttttttgattaagCAATAGAAGAC
AATAAGCCAAAGACGGAAGTGATGGTGAAGAGAGCCAAGGTGGATGATGG
TGGTGAAAATGGTCCTTTTTGTAAGTTGACTTCTTGTTCATTTTATGTAT
CGGTATCAAGGTATGTTTGTTAGGTGAGCAAAGATATATGACTTCATCTA
TATCAGAACACACTACGAAGCCTGAATACTGTCCATAGATATCTAACACT
AGGCGCAGCTACTCTGTTCCTAGATGAAGAAAAACAATATGCAATCTTAG
CCGAGTTGAcgtaaatcaatcaatcaatcaatcaatcacatTACAATATA
TTCCTGCCGTTTCAGTTTCTAATTGCCTGTACCATACTGTGGTCTACTCA
GCAAaatggcgcattattttgcttcaactgGGGTCAACTGGCATCTCTTG
AGAATGACAGAGTAGCTTTATCTTTTGTTTAGTATAAGATAACTGTGGTA
CTGTACTGCACTGACAGAAAGGCCAAAAAGGACATTTATTTTGGGATTTC
TTGATgataaatttttctttcataatCTACCTATGACAGTATCCTCATAA
GTAAGACTACAGTCCCACTCCACCCTCTTTATATTCACGAGCCTTTAGAT
GGATATTTCTTTTCCAAATACTCTTGCAGCATGTGGCTTTGAAACAGATT
GcacgaaatattttcaattcgtCGGAACAAAACTACAGTGGAAGAAAAGC
ACTCGAATTCCTGATCGGAAAAGTTCACATGGTGCATCCATGGAGGTGGA
CGTCAAGAAGGTACGCATTGTGAAATACCCAGCCACGTCCCCTGTGTACT
ATCGGCTTTTTATGCTTGCTGGTAGCgccatcagtaacgtaaataaagcc
tgggatataCAGGCACGAGGTTCTGTAATACCATATAGGTATCGCGGGGT
TGGGGATTTTAAGTACGGGTAAACGACAATTATTCGTGgacgttaatttt
tatttttgggcgTTGATTTTTATTTGTGGGCGTTAGTTTGAACACCAGTA
AAACAGTggaataaaatagaaaaaaaaatagaagagCTTTTAACTTGCTT
TGCCGGGTGTTTGAATGACTGTTTATAATTAAATTATTCGCTGTTCAGCG
GAATTTACCAAACTAGAACTCTTTTCAGTCCTCGAGAATAACTAAAGATA
GTTCAGCCTGAAAGTCTATACACTTGACAAACCCGTCAAATATAAATATC
TTATTTCGGAGTGGCCAGAAAATCATATTTTTACACATTCAAAATCTGTT
GAATACCTTGTGGAATGTACAATAAAGAATCTTGCAATAATACACATATA
ATACACACTTTACTTTTTCAGACGAACACGAGAAAAGATCGTGCTTCCAT
GTCGTACAAATTCAACGTACGTCACGCGGCACAATGTAATGAGTTCTACT
ACAACATGTTCGACGAGGAAGGATGTGACGTCGTCAGATTGTTGGTCACC
ATGCAATGTGACGGAGAAAACAAGCCAACTGAATTGTTCAGAAAAAGTTG
GAATGAAAAGGGTGGTTGGAATCGTGTGTTGATGAATATCAAAAAAACAC
CAGGAACTATTTGCACTGTGAGTTGAGTGTTTATACTAAGAAAGAGTGCT
AGCATCTATACAGCGTGGAGTGCAccatttaaaatctttttggTCTGAAG
CCTATATTACTATAGCCCCATCGCGGGTACCATCGACTTCGCTAATTCGA
GCAAATGGGGAATCTAATCACTTTCGACTTACAAGATATATCCCAAATAT
AGAAATTTATTATCATATTGGTTATTAATAAGACTGTGTtcgagttttca
aaaatatccaGGTGGTGCTTAAACAAATCAAAGGAATAGTAATTTCGTTA
GCAGCAAAACGTATTGTAACCACACCAAACCAACTTCGTTTAGATCACAT
GGCGAGCATCTCAAAGTTTGTCACCAGAAGGCAGGTTGAATTTGGATGAC
ATCACAATGTACAACCGCGCATGTCCAAAACCAAATGAAGTGGAGATTCC
AAGTAGGTTAATGTACAACAATACCAATACAATCTCATCTCCACTGTAAA
CCTTCTGATTTATGATGGGGCGtataaaagtttatttgatGACATATAGT
AGATATAAAAAGACTAAAACACCCAAAATCTCTCAAGGATTATGAGTTTG
TAAAAGTTTATTGTCTTGGCTCCATTCTATAAGACTCGActttaatttga
aatattacgcAGAAAAAATGCAAGgtcaaaagtgttttcggtACTTTGAG
TTCTAAACCCTTCCTGTACCGGTGTCGCTATGCCGACACGGGGTATGGGA
AAAAGgcgaattttgattttgaaatcgatttctttttttaaggttACACA
AGTATATTACAAGTACTTAATGAATTAACAGGATCgaatttcatgaaaat
aactttattgaaattttgaccgtttttggACAATATTCTTATTAAGTCAT
TAGGACAAGAAAGCACCAAATTTGTATATTGTACCAGATTGTATGTCTTT
CCAGGGGtgggggcactccaggtaagtgacctaccggacgtgcgaccctt
aagggtaggtttttttggactttggaaagcgcaatgtaagggttgatttg
tgagcaagtgggaaaaagggcactgtaagggtgtaaaatttgagtaaata
ccaaattttgaggtaaaatttgagaaatttcaaaaaattttcgaaaaatt
gcactataaaggtcgattttcagccaaatttttcctgcactgtaagggtc
cgattttagagacttgatttttggccgaacgtacggtcgttttcaaaatc
gagtgcccccccggaTGTCTTCCAAAGGAACCCATCGTTTCATTCACAAA
TAGAACAGGATACACTAGACTTTTACGATGAAATACCACATGAAAAAGAA
ACAAggcaaaatttacattttttgatcAGATTACACAGTGCAAAGGAGGC
ATGATCATAATCCGccaaattcatttttattttatacccAAGACAGTTTG
TGAAATATAATATGGTTAAATACACTTGTAGCTTGTTTGATTGTTAGACT
GGTCCACATTTCGCCATTTGTTAATCAAACCTTTCTCAAAGAACCCCCTT
ATATTTTTAGCTTTGGTTGGAAAACGTCTTGGGTGACATCAGCATAGTTC
GGATTCGACAATATTGTAATGGAAGGATTTTGACCACCCTCCTTgtcatt
caatatcaaaaaagtccaaaaaaagatcattttgacATTAATACCTCTTC
CAACAACAGTGAAATCATCCTAAAAGGTATTCTTTCGATTCATTTCAGGT
GCAGCTAGTTGTACACTGGAAGGGAACACGTGTGAATGGAAGGAGACTGG
GCTCAAGTGGAGTTACTCCAATAAAACCACGCCTACTCTTTACACTGGTC
CTGATCTCTACTATGGAAAGAAAGTCGGACGTAAGTTGGATAATATTGAA
GACATGTACACATTTTttcatataagaacaaactaagaaCATAAGCCTTT
GATTGCCAAAatattaggaacattttaaggctttgcagaccataaaatac
ctattttcttaggagaattgacaaaaatactcataaaatggtgaaaataa
gaacatgttaagaacattttgaggctttaaaatcaaaaagttaagaacat
ccaaaggttctaacaattttggatgttcttacaatAAAAACGTGTAACCT
GATGAACCGATACCTATCAGTAACCCACTTGGATCTAAAACACATTGGGT
TTTGGACTCGATCACTGAAGTATACAAATCTTTAACACCACTGTTTTTAT
TTCACACACTGTATCAATGTATCGCAAACATAAGAAATACTGGTAAAAAC
TTTCCATACCAAACAAACTTATTTAAAATGTTTCTCACATTTTACTACAG
CTAAATATGCTTTCCTTGAGGCAAGTGGAAGCAACTTCCCATCCGTCAAA
GGTGTATTGACAAGTCGCAAGTTGAAGGGAGACACTGACAACTGTTTCCG
AATGATGGCTTACATGTATGGTGAGGATTTGGGTACACTACAAGTGTCAT
TCAAAAGTCCAAATGTCACCGATAAAGTGGTGTATGAGAGGAAAGGCGAT
CAAGGCAAAAGATGGTTCGAAGCTTTCGTAACCATTCCAGCTAATACTGA
AACCCAGGTATCATTACTATGAAACTCTATATTCTTAACAGAAAACAGTG
TTAAATTGGTTTGTTGGTTACAAAGAAAGTGGGTAAAAGAATTTTTCACC
CATAGCTACAGACGATACTTTAATAGACATTCTCCTATTGCTTATAGATC
GAAATCAAAGGGGTGACAGGGACTGGACCTCGTTCTGATATTGCCATTGA
TGACATTCTGGTTGAACCTGGAAATTGTGATGAGCAAGGAGAGCTTGTTG
GGTGTTCATATGATGTTGCTGGTTCAAACGATCTATGCCACTTCACTGGA
AACCCAAACTGTGGAGAGGTTGAAATCAATATCCCTAGTAAGCTCATAGA
GTcaatttaaagttttctttccAAACTTCTCAATGTGCAACTTTTTTGCA
ATACTACAGTTCCATCGAAAACCTGAGATATCTGGGTATGTAGATTTCTT
GGAAAGCGATGATCAAGTTTAATGAATATAACAACCATAGTGTCGTTGGA
CAGCTCTGCTACAAATCTACAAGAAGCAGCGGACTTCTTTTCCTTCTATC
TTTTATGGGGTTAATTACCAACAGTGCACAGTGCGACAACCATTGAGAAC
GTAACTAAGGTTTGAAACATTATGTTCTTATCATCAATTCACAGATCTTG
GTGAGGCCAAGCAGAATCGTTTGGTACAAATtataccctaccaagccaaa
gattttgaaatttcatttgatGTTCAACCTGGCGATAAATCTAGCGGTTA
CGCAAGTTTAGTACACTTGACAACTGGATCAGATTGTTGTGGAAGGGGTT
TGTATTCATTACAACGATAAACAATTTTCCCGATCGCAGGACATACCCAT
GGTTATTAGTTTACCCCATCTTTCGTATCAGTTTTACAATTTATCTCTTA
TGTCCTGTACACGACTCTTTCAAAGCAGCCCCTCCTCATTCTGAAAATGC
ATGAAATATGAACAATCAACGACTAGTATAATTATGCGTTCTTTACTTGT
AGGTTCACGCCATCCAGCCATTTATTTCCATCCCAACACACTGAGAGTGA
TGGTGTGTACGACCGAAGCTGTCGGAGGTCATAGATGTATCATAATGCCA
AGAGATATCCCCACTGGTCAAACAAGTCATGTTCAATATACTTTCAAAGA
AAACGTAAGACCTTAAGGATATCTGTACTTAAGTGTTTTTGAAGTATAGA
AATTAGATCTAATAATTATATAGGAAAGGGGTCAATATGAAATTGATAAC
ACGAGGTTCGTAGATAATTCGCCGTTTGCAGTGTAAAAATTAAACCCCTG
ATTACAATTTCATAGGCTCATCATCTCAATTTTTCATCATAGCCATCGAC
ACCAGGCCGCGGAGTTTGTGAGTTATTTGTGAACGGACAAAAGATTGGAG
CTCTTAATGTGTACACAGCTGAGTTCCCCAACGTCAAGATATTCTCTGGA
GACATACAAAAGCAACCAGTTAACAACAAACACATTATCACTAATTTCTT
CTACAAGAATACAGGTAAGGCTGGTCATCGCAAAGACATAGTGTTTTTTC
TTGAGTTGAAAAAAATGTCCCCTGAGATAAGCTTCGAAAAAAGACCAACT
CTACCGACTCAAATTCTAATCGTATTCAATTCAAATGCAAATGTTGAAGA
ACTTTGTAATAGAGGGAAGGGTGTTGCCTGACATAATGAGATTCAGAAAC
CTAAACGTGTACCTGTACTGTGTTATGAATCGCAGCGATGTATATTTgat
gaagatgatgattttctacGAGGTCAATAAATTTGTCAATGTAAACTTTC
GAATCTCTCTTTCTCTCATCAGCAAAAGTGGAATCATGCACGAAGACATG
CACTGcaaacgtcatcaaaacaaaNTACTTGTAGGTTCACGCCATCCAGC
CATTTATTTCCATCCCAACACACTGAGAGTGATGGTGTGTACGACCGAAG
CTGTCGGAGGTCATAGATGTATCATAATGCGAAGAGATATCCCCACTGGT
CAAACAAGTCATGTTCAATATACTTTCAAAGAAAACGTAAGACCTTAAGG
ATATCTGTACTTAAGTGTTTTTGAAGTATAGAAATTAGATCTAATAATTA
TATAGGAAAGGGGTCAATATGAAATTGATAACACGAGGTTCGTAGATAAT
TCGCCGTTTGCAGTGTAAAAATTAAACCCCTGATTACAATTTCATAGGCT
CATCATCTCAATTTTTCATCATAGCCATCGACACCAGGCCGCGGAGTTTG
TGAGTTATTTGTGAACGGACAAAAGATTGGAGCTCTTAATGTGTACACAG
CTGAGTTCCCCAATGTCAAGATATTCTCTGGAGACATACAAAAGCAACCA
GTTAACAACAAACACATTATCACTAATTTCTTCTACAAGAATACAGGTAA
GGCTGGTCATCGCAAAGACATAGTGTTTTTTCTTGAGTTGAAAAAAATGT
CCCCTGAGATAAGCTTCGAAAAAAGACCAACTCTACCGACTCAAATTCTA
ATCGTATTCAATTCAAATGCAAATGTTGAAGAACTTTGTAATAGAGGGAA
GGGTGTTGCCTGACATAATGAGATTCAGAAACCTAAACGTGTACCTGTAC
TGTGTTATGAATCGCAGCGATGTATATTTgatgaagatgatgattttcta
cGAGGTCAATAAATTTGTCAATGTAAACTTTCGAATCTCTCTTTCTCTCA
TCAGCAAAAGTGGAATCATGCACGAAAACATGCACTGcaaacgtcatcaa
aacaaaggtcaaCAAAAAGGAAGGTGAGAGAACAGGTTTCCCTTTACTTT
GGAGCTACATGTTATATTGGTGCTCGAgaattcaaaatgaaataaagatA
CTAAATTCAAATTGCGCATTTCCATGAGCTTagatttgaattgaatttat
GTGATTCGATCCAGGGTGATAGATGTTGtaaagaaagtttcaataatTCT
GCACCATTTTCGTTTATAGTCACTGTCGCTAAATACAACAAAACGCAATG
TCCGGTATCTTTCGAAAATGAAATCGAAATCCCACTGTCCATTCGCAACG
GACGTTTGGCCTGCATGGCGTTCGATTATCTGATTGGACAAAACAAGAAG
GGCAATGCTGAATGTGAGATTAAAGTGCAATACCGTGAGTTCGTTTCCAA
CAGATGGGTGGCTAAACCTGTTCACACGTTCAAAGATAAATTCGAGTTCA
ATGTATGGATGCCCTTCAGACGTGATTTTGATGTCATCTTGGAAGAAAAC
AAGAAATACAGGGTGAGTGCGGACCGATATATAATTATCTCCATTTGCAT
ATATTCGCTTGTTTAGACATAAGAACAATATTCaacttaatatttttatt
tctatattCAATCTTAGTAACGGAGGTCTGTAATAGAATTGACTTTTCTC
CCTTCCATGCATCTTTGAATTATACCTCTCGACCGAAGCTATTCATCAAA
TGACTTTTTCATTAGATTGGTGTGATTCACAAATTGACCGATCAATGTCC
AGAGATTTCTTTTGCCAACATGAAACTCTTGGATGGACCTTGCGCTTTAC
CTGAAACTCATCAAGAACACTGATCAATGGAACACGGTACATCACTGAAA
CTGATGTGAGCAGGATCGTAAATGGTAAATGGAAAATGGAAAACTTATAA
CTTAAATAGGATTAGAAACTTATAATCGTAATAGTGTTTCAGCGAGTGAT
AAAAGTAGTTGTTTACTATAAGAATCATAAGCCAATGCCACGagtttcaa
aattatttcaaaaacattaacCTTCCCTtcgagatttttcaaaaaacagg
CCCTGCGGAAGCGGaaagactggggagacttcagccacTTTTgattaaat
tagattttttttctcaaatttctagcgaatttaattttattatgagcctt
cagcctccccacttttacggtcgttccgccgggcctgaaaAAGATATTTa
gggaattaatttttcttttttcgtgGTTTTACAACCCTAACACAGGCTTA
AAAATCGGAACGGTGTTCGCCCTGAAATTATTCATTCGACTATTCATTat
atcatagtataagaaagccgcggctggaatatgtaccgcattgtcttttc
agttaattgctgttccatctctgtctccgagctttataagaacatcgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042523XLOC_042523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068116-exon-scaffold_48-1491911889:172615..172639TCONS_00068116-exon-scaffold_48-1491911889:172615..172639Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:172615..172639TCONS_00068116-exon-scaffold_48-1510915933:172615..172639Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:172615..172639TCONS_00068116-exon-scaffold_48-1575043694:172615..172639Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:173016..173084TCONS_00068116-exon-scaffold_48-1491911889:173016..173084Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:173016..173084TCONS_00068116-exon-scaffold_48-1510915933:173016..173084Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:173016..173084TCONS_00068116-exon-scaffold_48-1575043694:173016..173084Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:173341..173373TCONS_00068116-exon-scaffold_48-1491911889:173341..173373Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:173341..173373TCONS_00068116-exon-scaffold_48-1510915933:173341..173373Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:173341..173373TCONS_00068116-exon-scaffold_48-1575043694:173341..173373Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:173704..173784TCONS_00068116-exon-scaffold_48-1491911889:173704..173784Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:173704..173784TCONS_00068116-exon-scaffold_48-1510915933:173704..173784Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:173704..173784TCONS_00068116-exon-scaffold_48-1575043694:173704..173784Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:174344..174474TCONS_00068116-exon-scaffold_48-1491911889:174344..174474Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:174344..174474TCONS_00068116-exon-scaffold_48-1510915933:174344..174474Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:174344..174474TCONS_00068116-exon-scaffold_48-1575043694:174344..174474Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:175036..175281TCONS_00068116-exon-scaffold_48-1491911889:175036..175281Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:175036..175281TCONS_00068116-exon-scaffold_48-1510915933:175036..175281Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:175036..175281TCONS_00068116-exon-scaffold_48-1575043694:175036..175281Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:175608..175716TCONS_00068116-exon-scaffold_48-1491911889:175608..175716Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:175608..175716TCONS_00068116-exon-scaffold_48-1510915933:175608..175716Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:175608..175716TCONS_00068116-exon-scaffold_48-1575043694:175608..175716Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:177013..177144TCONS_00068116-exon-scaffold_48-1491911889:177013..177144Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:177013..177144TCONS_00068116-exon-scaffold_48-1510915933:177013..177144Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:177013..177144TCONS_00068116-exon-scaffold_48-1575043694:177013..177144Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:177615..177871TCONS_00068116-exon-scaffold_48-1491911889:177615..177871Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:177615..177871TCONS_00068116-exon-scaffold_48-1510915933:177615..177871Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:177615..177871TCONS_00068116-exon-scaffold_48-1575043694:177615..177871Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:178012..178201TCONS_00068116-exon-scaffold_48-1491911889:178012..178201Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:178012..178201TCONS_00068116-exon-scaffold_48-1510915933:178012..178201Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:178012..178201TCONS_00068116-exon-scaffold_48-1575043694:178012..178201Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:178509..178661TCONS_00068116-exon-scaffold_48-1491911889:178509..178661Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:178509..178661TCONS_00068116-exon-scaffold_48-1510915933:178509..178661Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:178509..178661TCONS_00068116-exon-scaffold_48-1575043694:178509..178661Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:179749..179900TCONS_00068116-exon-scaffold_48-1491911889:179749..179900Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:179749..179900TCONS_00068116-exon-scaffold_48-1510915933:179749..179900Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:179749..179900TCONS_00068116-exon-scaffold_48-1575043694:179749..179900Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:180089..180260TCONS_00068116-exon-scaffold_48-1491911889:180089..180260Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:180089..180260TCONS_00068116-exon-scaffold_48-1510915933:180089..180260Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:180089..180260TCONS_00068116-exon-scaffold_48-1575043694:180089..180260Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:180569..180637TCONS_00068116-exon-scaffold_48-1491911889:180569..180637Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:180569..180637TCONS_00068116-exon-scaffold_48-1510915933:180569..180637Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:180569..180637TCONS_00068116-exon-scaffold_48-1575043694:180569..180637Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:180834..181126TCONS_00068116-exon-scaffold_48-1491911889:180834..181126Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:180834..181126TCONS_00068116-exon-scaffold_48-1510915933:180834..181126Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:180834..181126TCONS_00068116-exon-scaffold_48-1575043694:180834..181126Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1491911889:181330..182013TCONS_00068116-exon-scaffold_48-1491911889:181330..182013Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1510915933:181330..182013TCONS_00068116-exon-scaffold_48-1510915933:181330..182013Clytia hemisphaericaexon
TCONS_00068116-exon-scaffold_48-1575043694:181330..182013TCONS_00068116-exon-scaffold_48-1575043694:181330..182013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:172615..182013 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.0719	37.7347	15.9716	15.5231	0.0272581	0.1176	1.68017e-08	0.447009	0.0082956	0.0112256	0.799197	0.161941	0.0502411	0.0032695	0.00125831	0.00310314	15.6118	16.0737	0.00763678	0.0106199	23.9016	21.2214	19.1968	25.4096	3.07575	0.135299	0	0.0201308	4.13393	7.87795
Blast
[Close]
BLAST of TCONS_00068116 vs. Swiss-Prot (Human)
Match: MAMC2 (MAM domain-containing protein 2 OS=Homo sapiens GN=MAMDC2 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 2.027e-18
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 1 
Query:  526 KGGWNRVLMNIKKTPGTICTITWRASQSLSPEGRLNLDDITMYNRACPKPNEVEIPSAASCTLEGNTCEW---KETGLKWSYSNKTTPTLYTGPDLYYGKKVGPKYAFLEASGSNFPSVKGVLTSRKLKGDT-DNCFRMMAYMYGEDLGTLQVSFKSPNVTDK-VVYERKGDQGKRWFEAFVTIPANTETQIEIKGVTGTGPRSDIAIDDILVEPGNCDE 1170
            +G W +  +  KK P     +     +S    G + LDDIT+   +C    ++  P    CT E + C +   K     W      TPT YTGP   +   VG  Y ++EAS   +   K  L SR L+G +  +C     +MYG   G L V  K    +++ +++ R+G+Q   W  A +      + QI  + + G   RSDIAIDD+  + G C E
Sbjct:  451 RGVWMQAEITFKK-PMPTKVVFMSLCKSFWDCGLVALDDITIQLGSCSSSEKLP-PPPGECTFEQDECTFTQEKRNRSSWHRRRGETPTSYTGPKGDHTTGVG-YYMYIEASHMVYGQ-KARLLSRPLRGVSGKHCLTFFYHMYGGGTGLLSVYLKKEEDSEESLLWRRRGEQSISWLRALIEYSCERQHQIIFEAIRGVSIRSDIAIDDVKFQAGPCGE 666
The following BLAST results are available for this feature:
BLAST of TCONS_00068116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MAMC22.027e-1830.00MAM domain-containing protein 2 OS=Homo sapiens GN... [more]
back to top