TCONS_00068108 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068108
Unique NameTCONS_00068108
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068108 ID=TCONS_00068108|Name=TCONS_00068108|organism=Clytia hemisphaerica|type=transcript|length=1456bp
AAACAGTGTCTCACAGAGAGGGGCACAAGGCGCAAACTTCTAAGAAATAT
GCGCTTTCAACTTCTACTTAGTGTTTTTTGGGTGTTTGTGAATTTTCATT
GTGTATCTATGAATGAGTTTGAACTGCCTGAAGATTTCTGCAAAGACAAG
CCCATCTTCAATGAACACCAAGTTGAGTGCAATAAATATATCATATGCGG
CGCCCTCGTGCCGGTTATCCTCAAGTGCCCAGAGCCACTAGCATGGGACA
GCAGACGAAACATTTGTAATTGGAGACGCTACACCAAATGCAAAACAGAA
CCAACAACGACAGCTACACCAAAAGTGACCAAACACACTTTACCTTCTAA
CACCAGAGTGCTTGCTGAATTGAAGTGTGATCATACAAAATGTACCTTAC
CAAATTGTCGTTGTCAAAGCCCACAGGTTCCTGGTGAATTGCCAACTTCA
CAGGTCCCACAAATGGTTCTCATCTCATTCGATGGGCCTGTCAATCAAGC
AAATCATGAATTTTTCACTGAAACTTTTGATGCTCGGTTGAATCCAAATC
GATGTCCAGTAAAAGTGTCCTTCTTCGTATCGGATCATGGAAATGATTAT
AAATTGACTCAGAAGCTTCATCGGAAAGGTCATGAAATCGCTGTCCGATC
GTTAGCACCTGACCAAACACACGGATACTGGAAAAACATCAGCTATCTTG
ATCTCGTCAAAGATGTGATTGGTTTAAAGCTCAAACTCACATTGAATGGA
ATCAATCACGTGACCGGTTATCGAGCACCTTTCCACCAATCAGCTGGTGA
CACAACTTTCGCGGCTCTACAAGAGTATGGGTTCGAGTATGATTCGTCTC
TACCAATCAGATCGAAGGAGAAACAATGGTGGCCGTTCACGATGGATTCT
GGGATACATTCGTTTGATTGTTTGTCCCCTCCCTGTCCGAAATACTCGTA
CCCTGGATTATGGGAGTTACCATTGACGTCATTGAGTGACGGAGAAGAAT
CTTGCAGGACCTATCAATCGTGCACGAATTACGTTCAAACATCAGATGGA
TTCTACGATTTcttgatgaaaaatttcttCCGATTGTACCAAGGAAATAA
GGCACCTCTTACACTGGCAGGAACAGCTTCATGGTTGATGTCCCCAAGCC
ATCCTTACAGAAGACAAGGTTTCATGAAATTCCTAAATCACATCGGTTCG
TTCAAAGATGTTTACGTTGTCAGTGGATCACAGGCGTTAGATTGGATCCG
CAGCCCTGTATCGAGCGAGAAAAAGATTGCCGATCGTCTAAAGTCTTGGT
cgtgttaaaaaaattcccatgttttatGTTTTAATGTGACAACATTCACA
GCTGAATGGCAGAGAGGGGTCTTTTGATTCCAAACTCAGATCTTGTAGAT
AGTTTATATTATAGAAATTATTTATtccaaaagaaatatttacccAATAT
AAAACA
Run BLAST on NCBI

transcript from alignment at scaffold_48:114588..121328+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068108 ID=TCONS_00068108|Name=TCONS_00068108|organism=Clytia hemisphaerica|type=transcript|length=6741bp|location=Sequence derived from alignment at scaffold_48:114588..121328+ (Clytia hemisphaerica)
AAACAGTGTCTCACAGAGAGGGGCACAAGGCGCAAACTTCTAAGAAATAT
GCGCTTTCAACTTCTACTTAGTGTTTTTTGGGTGTTTGTGAATTTTCATT
GTGTATCTATGAATGAGTTTGAACTGCCTGAAGGTAAGCGGCTCTTTGGA
ATGGTAAATGGTTTCGCCttattgattttttcctttgttCCTCGTTTCAT
ATAAGctagtttatgtatgtgtgtttttcagcgacggagaggGTCAGCTT
CTGATTTTTCTAGAACCTGATTGACTGAGGACGACCGTAAATCAACACTT
TTTCCGTCCTCGATTTCGCGGGTCAAACTGAGAGTTATTCAAAATTGCTT
CACTCACTCTGCTACCCTCAAAAGATTCATTCATACTGCACTATCATAAT
AAGTTCAATAGCAAAATAagtaaatacacgtttttttttataaggaacac
gtttataaggaacgcaaggctgaaaatggttcaaaaaataaggaattgtt
aaggaactgctcaggctgagaataagtggatttgaaaataatgtacctta
ttgggactaatttgaccaaATTTTGATCTTTCAAGGGGCAAAAAGTTCAA
AATTTgctatgtagtaaggaactcgataaggaactttgagactgaaattc
tctgtaaaaataaggaactccaggctcagagcaaagttaaggttcctNGT
CCTCGATTTCGCGGGTCAAACTGAGGGTTATTCAAAATTGCTTCACTCAC
TCTGCTACCCTCAAAAGATTCATTCATACTGCACTATCATAATAAGTTCA
ATAGCAAAATAAGTAAATACAATTCCTCTTTCTTAACTTTCAGATTTCTG
CAAAGACAAGCCCATCTTCAATGAACACCAAGTTGAGTGCAATAAATATA
TCATATGCGGCGCCCTCGTGCCGGTTATCCTCAAGTGCCCAGAGCCACTA
GCATGGGACAGCAGACGAAACATTTGTAATTGGAGACGCTACACCAAATG
CAAAACAGGTAAGGGTATCTTAAATGTATTTTGCTGAGGAAAACGCTgct
actttataagaactatcGCTTGGTGGAGAATTGAACTTATTTAGTTTTCT
TTTGCAAATAGTTTcaaaagaaatggaaaatcatACTTTTATCATATTAG
TTAAACCAAATTTGACCTCTCTTTTAGAACCAACAACGACAGCTACACCA
AAAGTGACCAAACACACTTTACCTTCTAACACCAGAGGTTGGTACCATAA
AACTGAGCGTGTAAAACTNACACCAAAAGTGACCAAACACACTATACCTT
CTAACACCAGAGGTTGGTACCATAAAACTGAGCGTGTAAAACTTTAACCG
TTTTTTAAATGGTATTGAGTAATAGCTGAACACTATTCTTCTACCGGTAG
TAAAAAAGTTCAACCTTCTCCTATTTCACAGTGCTTGCTGAATTGAAGTG
TGATCATACAAAATGTACCTTACCAAATTGTCGTTGTCAAAGCCCACAGG
TTCCTGGTGAATTGCCAACTTCACAGGTCCCACAAATGGTTCTCATCTCA
TTCGATGGGCCTGTCAATCAAGCAAATCATGAATTTTTCACTGAAACTTT
TGATGCTCGGTTGAATCCAAATCGATGTCCAGTAAAAGTGTCCTTCTTCG
TATCGGATCATGGAAATGATTATAAATTGACTCAGAAGCTTCATCGGAAA
GGTTGGTACATTGTCATCtttgaattctcaaaaaaaaacctTGGCTTATa
tatagcgagcacctcactaaaaaccgggatttttcatctcgtttttaatg
agttccactttgacgatttttgaaaaatagaagcttttcaagtgttttga
cgcaaattcgattttttcctcctgcaaaggcttcaaaagtttaaagtgac
gtcaaaaaaccgaatgtttggagcccgaaaacctgggcttaaaacattcg
aaaatgtcgcaaagtggaatggacgttaattgcgtagaaaaaacgcgggt
gacgtataggtctagtataggctatggCTTATACAGATGTGGAAAAGTAA
AATTTGTCATGATTGTCCGACAATCTCAATATGACTTGATTCAGGATTGA
AATATTTTAGTGGTCGCAATTTCAGCTTTATCAGTATTTTAGTCCTTATT
CCTAATGAGTTCTGCTTCAGAAAGGCAGAACATCGgagaatttcatgaaa
aaggactTCTGTGTAATGTGgtgaaatttctttcttttttttaaagtagt
ttttttcttttatataaagGTCATGAAATCGCTGTCCGATCGTTAGCACC
TGACCAAACACACGGATACTGGAAAAACATCAGCTATCTTGATCTCGTCA
AAGATGTGATTGGTTTAAAGCTCAAACTCACATTGAATGGAATCAATCAC
GTGACCGGTTATCGAGCACCTTTCCACCAATCAGCTGGTGACACAACTTT
CGCGGCTCTACAAGAGTATGGGTTCGAGTATGATTCGTCTCTACCAATCA
GATCGAAGGAGAAACAATGGTGGCCGTTCACGATGGATTCTGGGATACAT
TCGTTTGATTGTTTGTCCCCTCCCTGTCCGAAATGTAAGTAAGCCCATTC
ATACTCAATACAAGTTGAATAGTTGTAAGAGCTATGAGAACTTTACACCA
CGGTCATTGTATGGGCTAAACATCAAGCGGCGATACTTTTTacaaaaagc
agaaaaaattaGCCAAACCAAGAAATCTCTCTCATTTGGAAATTGATTAT
ATTATATTTCAGTTATATCTTAAACAAAAGATAATTCGCTCTTTCAGACT
CGTACCCTGGATTATGGGAGTTACCATTGACGTCATTGAGTGACGGAGAA
GAATCTTGCAGGACCTATCAATCGTGCACGAATTACGTTCAAACATCAGA
TGGATTCTACGATTTcttgatgaaaaatttcttCCGATTGTACCAAGGAA
ATAAGGCACCTCTTACACTGGCAGGAACAGCTTCATGGTTGATGTCCCCA
AGCCATCCTTACAGAAGACAAGGTATTAGGACTtttctattgtcatttta
cagtGTCTGTGTTTGATAAATGGTTACGATTCTACGGGTGAGTGTATCAT
TGGATTATTCAATATGCAGGTTCATATTGCTGGCCTATTATAAATCAAGT
CTCAGATTATCAATTTATACTGGGGAACTGCGATGCTTTTATTTCCCTAT
TTTCATTGTCTGCCGAATTCCGTTCCNTATGCAGGTTCATATTGCTGGGC
TATCAATCAAGTCTCAGATTATCAATTTATACTGGGGAACTGCGATGCTT
TTATTTCCCTATTTTCATTGTCTGCCGAATTCCGTTCCATACAATACTTC
GGTCCTTTATCCGCTACCTATATCTCTATGTACACGCATGTGTAAATGTA
CTGTTATAAAGTATAGTTTTAAGGATGAATAGAGGGCATGAATTTCAAAG
TTAACAGCGAGAAAGAAGGGATGGAACTTTTACCGTCAGAGAATAAAAAG
ACATAGCCATAGCCTACCATAGGACGTTCTCGTGTCTTGTGAGAACTTTA
AATTGTTTGAAGAAACACGCTTGTCCTGTTCAGAAGTTAGAAGAGGAAAA
GTCAGACACCAAATAGTCACAAAGATTATTCTGAAATAACTAGAAAAAGT
CAGAGCGCTAATGCAAGATGATTGAAACGATTATTGAGCAAGAGAAGCAA
AGAAGGAAAGTTTGGAGGTATGTTTCTTTTATTGATAGAATTTAGAGTTG
TAATCAATTGACAGTACTAattggtcagccccggtgacccttcaaatcgg
tTCCGCTGTTTTTTTCCAGCCGAGTCGCCATCATCATGGTGGGATTTGGA
TAATCAGCTTCAATTCCGATTTTTCCCGATTCGATTTTTGGACAACCGGG
TTATAATGATATGTGTGCGTCGGGATGCGTTGTAATTTCATAATGATTTC
ATATAGCGCGTCGGCGTTATTGCATCAGCCGTTATCTCCCTTATATTGCG
CCACCTCTTTCGAAGCGTACTGTGGACAATTTTCTGAAATGTTTGAGTAG
ATTCGCAGTAGTAGCTGGCTAAGTTGTTTCACAAACGTGATGGTTGAATG
GCTGGAAGAAGAGTTCAAGCAGTCTCAACTTTCATCATATCTTGAGGTTG
AGGTGAGAGTTTATGATTTATATGAatcaaagtttattgattccttgtca
aagttattttcaaaaaagatagcaTATTCAtagtttatattttctttttt
gcataTTATAAATCTCTATTATAAATCAAAATCCTGCAAAATTTACTAAA
AATGAACACTCAAATCTCTCTGTTGATTGACAAAAGAATAATGGACAAAA
TGTATATATGAATGAATTTGGtgttgaaatgaaaatgttggTAATTCGTT
GATTGTTTATTGTTGTTTTACTATCTGGTGTTACATGTTTATAGTATCGA
AGAAGTCCATGGCTTTGCATCGTTTGAGCTTGGTATTACCATCGCCTTCC
TGTTTTTGTTGTTGGTTCGTTTCTTCACACCTGAATACTGCACTGAAAGA
GTTCATAAAAGTGATAGGTAAGCTAAAGGTCTCTTTTTGATCCATCAAAA
TTTGCTAACGCAGACACTTTAACGTGTGTTTCTAGGTATATCTTAGAAAG
CAATCATTTTATAGTCCTTCCATTTTCATTTGAATAATGTCTTTTTATTC
GTCCAGCCATCTCTCAAAGAACGTTAAAAATCTATGATAGTCTTTTGTCT
CAATGAAAGAATAAAAGGGATTTGTTAGCGCTAGTTTGCAAGCGTTCTGT
TTCATTACTTTAACAtacaaaatatttgataaaaagtaTACTGGTATAGG
ACTATACCTTAAGCAATTAATCATGAATGATCTAAGTTTTAAAGAGTGAA
GTGATTTTGTTcatgttgttattattatttacCTGTGTATGGGACTTAAA
TATCTTCATTGTTTTGTTGTAGATATGCTATGCCGGGATCAATCAATAAC
CAAATAAAGACCCTGTcaacgcaccggacttaacgaacacggGACATGCG
AAAGTCcagtgtaaaatgagaatttttttaccatcggacaatctctacac
cggacttaaggaagtcggatgtctggtgtcggagaaggatatttttttcc
accggacaatcaaaacaccggaaaCACTAATTCAATGTCTTGTTATTGGA
ATTATTGCTGTTGGAATAACATTGGTATTGGACAATAATTAAAGACTTTA
TTTCAACTAAAGAGTATTACATATTTCAAATGTATTGCAAagaagtactc
tcgggtacctaatagccgggggggggggtgggaataagcaggggggtggg
aaaaaatctcaaaaattaataagcggggggattggaataaaaatgtcctg
ggtggaaaatgtttgaaaaggaggctaatacagcagaattaagacgaaaa
agggaactttcaaaaacattttcccaaaaattaataagcggggggattgg
aataaaaatgtcctgggtggaaaatgtttgaaaaggaggctaatacagca
gaattaagacaaaaaagggaactttcaaaaacattttcccaaaaattaat
aagcgggttggaataagaatgtcctgggtggaaaattttcgaaaaattaa
ttagcggggggggacggctattaggaaCCTGAGAGTAATTAATATTGTAC
AATAGTAATATTGTTAATATTTATAGACAATTATATGATTATCTAAAACA
AGattgttcaaaatttatgttaaaaatgaatttttttcaaaccttgttac
acattttttttataagcaactccatttTTCGGGCCAGGCCTGGAGTTGCT
AAGGGTTTTTTGAAATCCAGGCTCAAAGTTTGCTTAAAGATTTTCAAGCa
cgtttttgcatttttaacaatttttcaattttgaatgggcAGTAGAGgca
tttttcgaagattttcaaGTTGTGTCAAAGTTCTTTTTTAttgctgagga
aaaaagttgctAATTTGGATTTGAGGCCTCAGGGTTGCTAAGCAAGGTCC
TTATTTTTTGGGCCATATTGAGGCCTGAGCCCTAATcaactcggttgctt
ataaaaaaaatgtgtaatcgaCCCTGACAAAATGTTGACGATTtttgcac
ccattttgcctaagccACCTCCAGGAGTAGTTTATCGTTATCTTGTGATC
ACATATCCTTTTTGCTACTCTCTCTTGATCCAGCTTATCCTTTGATCTAT
CTTATCCTTtagggctgaccttccagcgcagctggtttattttataTCGA
TTCGACTCGGTTCCCAACCCATCCATAACGTCATAAAACGAATGAATGTT
ATTGATTATCTTTGCTGATATTCCCAACCCATTGACTCTATACCATTACC
AATACTTGTTTACGTTTTGAATTCTTAGTTTTGAtggtttcaatttcttt
taGGTTTCATGAAATTCCTAAATCACATCGGTTCGTTCAAAGATGTTTAC
GTTGTCAGTGGATCACAGGCGTTAGATTGGATCCGCAGCCCTGTATCGAG
CGAGAAAAAGATTGCCGATCGTCTAAAGTCTTGGTcgtgttaaaaaaatt
cccatgttttatGTTTTAATGTGACAACATTCACAGCTGAATGGCAGAGA
GGGGTCTTTTGATTCCAAACTCAGATCTTGTAGATAGTTTATATTATAGA
AATTATTTATtccaaaagaaatatttacccAATATAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042520XLOC_042520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068108-exon-scaffold_48-1491911889:114588..114720TCONS_00068108-exon-scaffold_48-1491911889:114588..114720Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1510915933:114588..114720TCONS_00068108-exon-scaffold_48-1510915933:114588..114720Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1575043694:114588..114720TCONS_00068108-exon-scaffold_48-1575043694:114588..114720Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1491911889:115431..115595TCONS_00068108-exon-scaffold_48-1491911889:115431..115595Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1510915933:115431..115595TCONS_00068108-exon-scaffold_48-1510915933:115431..115595Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1575043694:115431..115595TCONS_00068108-exon-scaffold_48-1575043694:115431..115595Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1491911889:115765..115824TCONS_00068108-exon-scaffold_48-1491911889:115765..115824Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1510915933:115765..115824TCONS_00068108-exon-scaffold_48-1510915933:115765..115824Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1575043694:115765..115824TCONS_00068108-exon-scaffold_48-1575043694:115765..115824Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1491911889:116019..116288TCONS_00068108-exon-scaffold_48-1491911889:116019..116288Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1510915933:116019..116288TCONS_00068108-exon-scaffold_48-1510915933:116019..116288Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1575043694:116019..116288TCONS_00068108-exon-scaffold_48-1575043694:116019..116288Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1491911889:116857..117171TCONS_00068108-exon-scaffold_48-1491911889:116857..117171Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1510915933:116857..117171TCONS_00068108-exon-scaffold_48-1510915933:116857..117171Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1575043694:116857..117171TCONS_00068108-exon-scaffold_48-1575043694:116857..117171Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1491911889:117385..117609TCONS_00068108-exon-scaffold_48-1491911889:117385..117609Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1510915933:117385..117609TCONS_00068108-exon-scaffold_48-1510915933:117385..117609Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1575043694:117385..117609TCONS_00068108-exon-scaffold_48-1575043694:117385..117609Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1491911889:121041..121328TCONS_00068108-exon-scaffold_48-1491911889:121041..121328Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1510915933:121041..121328TCONS_00068108-exon-scaffold_48-1510915933:121041..121328Clytia hemisphaericaexon
TCONS_00068108-exon-scaffold_48-1575043694:121041..121328TCONS_00068108-exon-scaffold_48-1575043694:121041..121328Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:114588..121328 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.59129	7.83496	3.00877	2.33837	9.37529	7.3133	8.68246	12.2078	13.954	22.1931	14.5294	92.1544	14.9679	16.6167	12.427	10.5422	28.1126	47.7194	17.202	14.9962	10.3234	10.5161	8.5342	8.29236	7.0504	8.82753	18.2952	9.33265	7.1718	5.21845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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