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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068099 ID=TCONS_00068099|Name=TCONS_00068099|organism=Clytia hemisphaerica|type=transcript|length=1901bp
gagagaaagaggaaaaaaatggATCGATAGATATTTTGATTATATTGTAA
ATTTCAAATAGCTGATTTCTCGAATTCTTATTTGTAGGAATAATCTGTCA
TCTTCAATGTGGACAAGGATGTGGCTTGGTCTACTCACCATCCTTCTCTT
ACCCTGTCTTCACCTGGTGAAAGGCCAAGAATGGGGTAACTGTTATGATG
AAGGTGGTGAGACAGCTTGCTACTACTGGCAAATGAACGGTATGTGTCAT
CAAGCAGGTTACCGAAGCTATATGTACCAGATTTGTAGACGGACCTGTAA
TCTATGTCCTTCAATTTTGATCACGCCTTATCCTCGACCAACGAAGAAAA
TCGCTTACAAACCATGTCACGATATCCGTATAAAATGTCCTTCATGGAAA
GAATACTGTCAACCAGGCAATGAATATTTCAGTTTCATGAAGAAGCATTG
TCGACGGTCTTGTCTCTTCTGCGCAGATCCGAACTGTAAGGATTTGAACG
TGCGCTGTCCAAGATATAAAGCGTCCGGTTATTGTCATCATGATCATCGA
TACCATAATTACATGCGTAAAAATTGTGCCAAAGCTTGTCAATTTTGCGT
CAGAGAGGATAAAGATATCGTCCAAAATGGCGGTAGGAAACCTACTTTGA
AAAAGATTCGAAGATATTTTGAATGTGATTTTGAGAAGGATGAATGTGAT
TGGTGGAATCAACCCTTCGGAGATACGGGAGATTGGGCCGTTGGAATAAA
CAAAAACGGCCCACAACAAGGCTATAATGGTTCTTCCAAATATTTATATG
TGAACGTCCCTTACAGAGGCTATAGAGCTAAACTTTGGTTGCCATGGCAA
TTGGTATTACCTGAAGGTGGATTAAAGTCTTACGGAGAGatgtgttttca
ttttgtttatcaaatcacaCATGGACGACTGACAGTTCACGAGAAAGCAC
AACCTAGCATGGCTGCAAAGCACCCCAACCCTAGGACTTTGATGGAGACG
CTAGACTATAAACATAAGTGGACGAAGGCTAAATTGACCGTCAAAGTAGA
GCCTCAATCATCACTCACCATTATCGGACAACAGGGTGTCTCAACATCTT
TTGTTGCCTTGGATAATTTTTATTTCACAGAGGGTCGATGTTGatgttgt
ttttaatttgtatAGTCTAAAAGTTTTGATAGAATTCTTTAATTTATAGA
AACATTTTTACTACTGCTCAAATATCTCGCAGTTATCGTTATATCTGATC
TGTGTTTTATACACCCTTGGTTTTACTTTCCTAGGGTGATTCTTTCTGAC
TTCGGCAAACCTTTGATAAACTATGAGAAAAAGTAAGGAATTGGCTAGAG
ATGATTAGTTCCTTGTAAATGTTGCTTCaaaattgtattcaatttcCAAG
TACACCTCTGCGTCATAAACCCGCTTGGACCctagccccactgaaaaatt
tggcagaaaattcgtccccggtgggaaaaaactCTGGAGTTTCAGCCCCA
TTGAAAAATTGTCTTTAaattcatccccatttgaaattcaatgtttaaaa
attgcaggAACATTTATCctccactgaggaaaaaagttctacTGGGGCTG
TGATATAGGGGTGTGCAGGTACATTCAATTCAATTCGGTCTTTCCGTAAA
AAACGATTACATTGCCGGTAggtacaaagaataaaaatatataataaaat
atcTCCCGACGAAAGGAATTGAAGCATTATTTTCTATCGAAAAGAAGcag
tagaaaaaagttttataaGTATAACTAACGATTTATGATAATGTTCCACT
CCTTAGtgttttttgcaatttccattGCGCCGTCCCATTCAATATTTAAT
GTTTTAAGATCATTTTTGACAACACTGAGCCAAGTTGTAGTTGGTTTCCC
T Run BLAST on NCBI transcript from alignment at scaffold_48:80060..82645+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068099 ID=TCONS_00068099|Name=TCONS_00068099|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at scaffold_48:80060..82645+ (Clytia hemisphaerica)
gagagaaagaggaaaaaaatggATCGATAGATATTTTGATTATATTGTAA
ATTTCAAATAGCTGATTTCTCGAATTCTTATTTGTAGGAATAATCTGTCA
TCTTCAATGTGGACAAGGATGTGGCTTGGTCTACTCACCATCCTTCTCTT
ACCCTGTCTTCACCTGGTGAAAGGCCAAGAATGGGGTAACTGTTATGATG
AAGGTGGTGAGACAGCTTGCTACTACTGGCAAATGAACGGTATGTGTCAT
CAAGCAGGTTACCGAAGCTATATGTACCAGATTTGTAGACGGACCTGTAA
TCTATGTCCTTCAATTTTGATCACGCCTTATCCTCGACCAACNAGCGACC
GCTATATAGGGTCTGGTCACTCACCCTCTATCTTTCGTCACTTCCGCTCA
AAGAAAAAACAGAACCGAAAGTTCTCATCTTACAATATTCTCTACTCTTT
TTTATGGAATATTGACATGGATATACAGTCACACAGTTTTGTTATGTGTG
TTTAGCCTTTGAAAGAATCATTCTTTTCTTCTCAACGCTTTCTTAGTCAA
AGCCTCTTGTTTGTCATCTATTTTTGTTGAATGTTTTGCTTTGATACGAA
GTGACTACACAGTCAGCTTCTGTGTGTTGATTTTATTGAGGGGTCATCAT
ATCGCTTTCAAAAAAACACAGAACATTTAACTGTCgagagaaagaggaaa
aaaatggAACGATAGATATTTTGATTATATTGTAAATTTCAAATAGCTGA
TTTCTCGAATTCTTATTTGTAGGAATAATCTGTCATCTTCAATGTGGACA
AGGATGTGGCTTGGTCTACTCACCATCCTTCTCTTACCCTGTCTTCACCT
GGTGAAAGGCCAAGAATGGGGTAACTGTTATGATGAAGGTGGTGAGACAG
CTTGCTACTACTGGCAAATGAACGGTATGTGTCATCAAGCAGGTTACCGA
AGCTATATGTACCAGATTTGTAGACGGACCTGTAATCTATGTCCTTCAAT
TTTGATCACGCCTTATCCTCGACCAACGAAGAAAATCGCTTACAAACCAT
GTCACGATATCCGTATAAAATGTCCTTCATGGAAAGAATACTGTCAACCA
GGCAATGAATATTTCAGTTTCATGAAGAAGCATTGTCGACGGTCTTGTCT
CTTCTGCGCAGATCCGAACTGTAAGGATTTGAACGTGCGCTGTCCAAGAT
ATAAAGCGTCCGGTTATTGTCATCATGATCATCGATACCATAATTACATG
CGTAAAAATTGTGCCAAAGCTTGTCAATTTTGCGTCAGAGAGGATAAAGA
TATCGTCCAAAATGGCGGTAGGAAACCTACTTTGAAAAAGATTCGAAGAT
ATTTTGAATGTGATTTTGAGAAGGATGAATGTGATTGGTGGAATCAACCC
TTCGGAGATACGGGAGATTGGGCCGTTGGAATAAACAAAAACGGCCCACA
ACAAGGCTATAATGGTTCTTCCAAATATTTATATGTGAACGTCCCTTACA
GAGGCTATAGAGCTAAACTTTGGTTGCCATGGCAATTGGTATTACCTGAA
GGTGGATTAAAGTCTTACGGAGAGatgtgttttcattttgtttatcaaat
cacaCATGGACGACTGACAGTTCACGAGAAAGCACAACCTAGCATGGCTG
CAAAGCACCCCAACCCTAGGACTTTGATGGAGACGCTAGACTATAAACAT
AAGTGGACGAAGGCTAAATTGACCGTCAAAGTAGAGCCTCAATCATCACT
CACCATTATCGGACAACAGGGTGTCTCAACATCTTTTGTTGCCTTGGATA
ATTTTTATTTCACAGAGGGTCGATGTTGatgttgtttttaatttgtatAG
TCTAAAAGTTTTGATAGAATTCTTTAATTTATAGAAACATTTTTACTACT
GCTCAAATATCTCGCAGTTATCGTTATATCTGATCTGTGTTTTATACACC
CTTGGTTTTACTTTCCTAGGGTGATTCTTTCTGACTTCGGCAAACCTTTG
ATAAACTATGAGAAAAAGTAAGGAATTGGCTAGAGATGATTAGTTCCTTG
TAAATGTTGCTTCaaaattgtattcaatttcCAAGTACACCTCTGCGTCA
TAAACCCGCTTGGACCctagccccactgaaaaatttggcagaaaattcgt
ccccggtgggaaaaaactCTGGAGTTTCAGCCCCATTGAAAAATTGTCTT
TAaattcatccccatttgaaattcaatgtttaaaaattgcaggAACATTT
ATCctccactgaggaaaaaagttctacTGGGGCTGTGATATAGGGGTGTG
CAGGTACATTCAATTCAATTCGGTCTTTCCGTAAAAAACGATTACATTGC
CGGTAggtacaaagaataaaaatatataataaaatatcTCCCGACGAAAG
GAATTGAAGCATTATTTTCTATCGAAAAGAAGcagtagaaaaaagtttta
taaGTATAACTAACGATTTATGATAATGTTCCACTCCTTAGtgttttttg
caatttccattGCGCCGTCCCATTCAATATTTAATGTTTTAAGATCATTT
TTGACAACACTGAGCCAAGTTGTAGTTGGTTTCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068099-exon-scaffold_48-1491911889:80060..80167 | TCONS_00068099-exon-scaffold_48-1491911889:80060..80167 | Clytia hemisphaerica | exon |
| TCONS_00068099-exon-scaffold_48-1510915933:80060..80167 | TCONS_00068099-exon-scaffold_48-1510915933:80060..80167 | Clytia hemisphaerica | exon |
| TCONS_00068099-exon-scaffold_48-1575043694:80060..80167 | TCONS_00068099-exon-scaffold_48-1575043694:80060..80167 | Clytia hemisphaerica | exon |
| TCONS_00068099-exon-scaffold_48-1491911889:80853..82645 | TCONS_00068099-exon-scaffold_48-1491911889:80853..82645 | Clytia hemisphaerica | exon |
| TCONS_00068099-exon-scaffold_48-1510915933:80853..82645 | TCONS_00068099-exon-scaffold_48-1510915933:80853..82645 | Clytia hemisphaerica | exon |
| TCONS_00068099-exon-scaffold_48-1575043694:80853..82645 | TCONS_00068099-exon-scaffold_48-1575043694:80853..82645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:80060..82645 + |
Blast
The following BLAST results are available for this feature:
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