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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068093 ID=TCONS_00068093|Name=TCONS_00068093|organism=Clytia hemisphaerica|type=transcript|length=1285bp
TTGGGGAATCACGTTTTCTCATGTATAAGAACAGGTACCCTTAaaatctc
agaccatctgattatccctttaaagacACTCACACACGCGCTACTATCAA
ACGTGTCAGTCGCCTTGGAAAACCATCTCAGGAAAAGAAGCGCCCTTTAT
TAATCTGTCTACTAGTATCTagcgaaaaggaaaaattttcacTTCTCGGA
TACCTTCTTTCTCTCAAGGGCATCCAAAAATACAAGACAACGAGTATAAC
TGAAGATCTAACACCAGTCGAAAGAAAGAACGTAAGGGAACTATCGTTCA
AAGCTAAAACTAGAAATGAGAATGATAACTCTGATATTTATAAATGGAGA
GTTCGAGGGGACTCAAAAAACGGATTCGACATCATCAAGGTCAAAATCAG
ATCTCAAACAAAGAAGACAGACACGAAGAATGTAGTATTTGCCAAGAATC
TTACTCAAACGAAAACAATCGGAGAACAATAATTCAAGAAAACCGTAACG
TAAATCAAGTAGATGATGTTGAAATAAAGATCAACGAAATCATGATCTTT
TATTGCAACGCCGACACGCTAACACCCGAGAAGAAGCGACAACTTGTGCT
TGATGTAAAGAAACATCATCCCCACATCATTGCGATATGTGAGGTGAAAC
CAAAGCACGGTGGACTGCTAGAGCTATACACGAACACGAGCTTAAACATT
ATAAATGTGTCAGTCATACGAACATGACTACTGGCATCGGTCGCGGGATA
ATTATTCTTGCTCATTCATCGATCAAACATTTGGTCACCGATGTCAACCA
ATCAATTTCAATGGAGTATCCACAATCAAAATTCGTCCATTCGGAAACGA
TCTCCTGGTCTTCTCCTGTATCTATCGCTCCCCTACAAACAATGACACGT
CAGCTGAAAATAACAACAAGTTGAATCATCTAACTAATCAAAGATATCGC
ATCAAACAACAAATACTCTCATAAATGCTTTGTTGGAAAAATTGGACGAC
GCCACATCTCGAGgaaagtaaagaagaaaaatttcttgaagcCCTTCGCG
ACTCCTTTCTCCACCAAAGTGTAGACGAACCAACCAGATGCCGTGGGACT
GACGACCCATCTTTAGTCGATCTCATTCTAACAGGTGAAGCTAACCAAGC
TTTATGTCTAGAGTGTCTCAGTCCTTTGTGTTTAAGCGATCATAGTTGCT
TGACCTTCAGTATCAAATGTGATGCTGTATTGAAACCTAAATCAGAAAGA
TACAAGTACGAGGATGCAGACTTTGAAGCAATGAA Run BLAST on NCBI protein sequence of TCONS_00068093-protein >TCONS_00068093-protein ID=TCONS_00068093-protein|Name=TCONS_00068093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MESSRGLKKRIRHHQGQNQISNKEDRHEECSICQESYSNENNRRTIIQEN
RNVNQVDDVEIKINEIMIFYCNADTLTPEKKRQLVLDVKKHHPHIIAICE
VKPKHGGLLELYTNTSLNIINVSVIRT Run BLAST on NCBI transcript from alignment at scaffold_479:93636..94920 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068093 ID=TCONS_00068093|Name=TCONS_00068093|organism=Clytia hemisphaerica|type=transcript|length=1285bp|location=Sequence derived from alignment at scaffold_479:93636..94920 (Clytia hemisphaerica)
TTCATTGCTTCAAAGTCTGCATCCTCGTACTTGTATCTTTCTGATTTAGG
TTTCAATACAGCATCACATTTGATACTGAAGGTCAAGCAACTATGATCGC
TTAAACACAAAGGACTGAGACACTCTAGACATAAAGCTTGGTTAGCTTCA
CCTGTTAGAATGAGATCGACTAAAGATGGGTCGTCAGTCCCACGGCATCT
GGTTGGTTCGTCTACACTTTGGTGGAGAAAGGAGTCGCGAAGGgcttcaa
gaaatttttcttctttactttcCTCGAGATGTGGCGTCGTCCAATTTTTC
CAACAAAGCATTTATGAGAGTATTTGTTGTTTGATGCGATATCTTTGATT
AGTTAGATGATTCAACTTGTTGTTATTTTCAGCTGACGTGTCATTGTTTG
TAGGGGAGCGATAGATACAGGAGAAGACCAGGAGATCGTTTCCGAATGGA
CGAATTTTGATTGTGGATACTCCATTGAAATTGATTGGTTGACATCGGTG
ACCAAATGTTTGATCGATGAATGAGCAAGAATAATTATCCCGCGACCGAT
GCCAGTAGTCATGTTCGTATGACTGACACATTTATAATGTTTAAGCTCGT
GTTCGTGTATAGCTCTAGCAGTCCACCGTGCTTTGGTTTCACCTCACATA
TCGCAATGATGTGGGGATGATGTTTCTTTACATCAAGCACAAGTTGTCGC
TTCTTCTCGGGTGTTAGCGTGTCGGCGTTGCAATAAAAGATCATGATTTC
GTTGATCTTTATTTCAACATCATCTACTTGATTTACGTTACGGTTTTCTT
GAATTATTGTTCTCCGATTGTTTTCGTTTGAGTAAGATTCTTGGCAAATA
CTACATTCTTCGTGTCTGTCTTCTTTGTTTGAGATCTGATTTTGACCTTG
ATGATGTCGAATCCGTTTTTTGAGTCCCCTCGAACTCTCCATTTATAAAT
ATCAGAGTTATCATTCTCATTTCTAGTTTTAGCTTTGAACGATAGTTCCC
TTACGTTCTTTCTTTCGACTGGTGTTAGATCTTCAGTTATACTCGTTGTC
TTGTATTTTTGGATGCCCTTGAGAGAAAGAAGGTATCCGAGAAgtgaaaa
tttttccttttcgctAGATACTAGTAGACAGATTAATAAAGGGCGCTTCT
TTTCCTGAGATGGTTTTCCAAGGCGACTGACACGTTTGATAGTAGCGCGT
GTGTGAGTgtctttaaagggataatcagatggtctgagatttTAAGGGTA
CCTGTTCTTATACATGAGAAAACGTGATTCCCCAA Coding sequence (CDS) from alignment at scaffold_479:93636..94920 >TCONS_00068093 ID=TCONS_00068093|Name=TCONS_00068093|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_479:93636..94920 (Clytia hemisphaerica)
TCATGTTCGTATGACTGACACATTTATAATGTTTAAGCTCGTGTTCGTGT
ATAGCTCTAGCAGTCCACCGTGCTTTGGTTTCACCTCACATATCGCAATG
ATGTGGGGATGATGTTTCTTTACATCAAGCACAAGTTGTCGCTTCTTCTC
GGGTGTTAGCGTGTCGGCGTTGCAATAAAAGATCATGATTTCGTTGATCT
TTATTTCAACATCATCTACTTGATTTACGTTACGGTTTTCTTGAATTATT
GTTCTCCGATTGTTTTCGTTTGAGTAAGATTCTTGGCAAATACTACATTC
TTCGTGTCTGTCTTCTTTGTTTGAGATCTGATTTTGACCTTGATGATGTC
GAATCCGTTTTTTGAGTCCCCTCGAACTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068093-exon-scaffold_479-1491911889:93636..94920 | TCONS_00068093-exon-scaffold_479-1491911889:93636..94920 | Clytia hemisphaerica | exon |
| TCONS_00068093-exon-scaffold_479-1510915933:93636..94920 | TCONS_00068093-exon-scaffold_479-1510915933:93636..94920 | Clytia hemisphaerica | exon |
| TCONS_00068093-exon-scaffold_479-1575043694:93636..94920 | TCONS_00068093-exon-scaffold_479-1575043694:93636..94920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_479 | supercontig | scaffold_479:93636..94920 . |
Blast
The following BLAST results are available for this feature:
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