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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068092 ID=TCONS_00068092|Name=TCONS_00068092|organism=Clytia hemisphaerica|type=transcript|length=949bp
TTGATTCTTCCTGATAGTCTTTGTACAGGAATTGCAAACCAAAACAAGAA
ATAACGGAATAAAATCCAACAGCAAGCATATGTCTGATCGCACTGCTGCC
ATCTTGCGAATCGTGCTTAATCGTTTTGATATGAATGAATACAAATCAGT
CGCCACAGCTCTGGAACCAAGTATGAAGTTTGAAAAGTCGATGAGGAGAT
TGTAAAGTTAAAGGATTACCAATCAGCGATTGGATGATTGACCTACGCAT
AATCGGTACCCGCCCAGACATATCGGCAGCAGTGGGAGTTTTGAGCCAAC
ATATGTGAAAGCCTGCCAAACAACATTGGATTGGCGTAAAGAGAGTGCTG
CGTTATTTGAAAGAAACACTTGATTATGGCTTGATCCACAAAGGATCTGA
GTCAGGAGATATTCTGCTTCACAGTTTTGCAGATGCTGATTGGGCTGGAG
AAATTTATAAACGTAAATACACCTCTGGTTACGTATTAAAGTCGGAAATT
CAACAGTATCGTGGAAATCCAAGCGCCAATCGATCATTAAGCACTCTCGA
CAACAGAAGCTGAATATATAGCCTTATCTCAAGCAACACAAGAGGCTATT
TGGCAACAAACTTTATTCAAAGGTATGGATTTCGTACAAACTGATCcaac
aaaaatgtttgaagaaaATCAAGGTGCTACCCAACTCACCAATCTCGAAC
CAAAGACATTGACATAAAGTTTCATCACATGCGCGATGCTGTCACAAAGA
AAGTAATTGATTGGCAATATTGCCCTACTGGGGGTTTTACATTGGCTGTC
CTTTTAATTGTCACTAATTATTTTACTGTAAtgaagtatgtaatttttcc
ttATAGGCTTTTTATTATGAAAATAGTAttgtcaactgctccaacttggg
actatcttacacaacatgggacggccattccaccaccatttcaccgaac Run BLAST on NCBI protein sequence of TCONS_00068092-protein >TCONS_00068092-protein ID=TCONS_00068092-protein|Name=TCONS_00068092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MIDWRLDFHDTVEFPTLIRNQRCIYVYKFLQPNQHLQNCEAEYLLTQILC
GSSHNQVFLSNNAALSLRQSNVVWQAFTYVGSKLPLLPICLGGYRLCVGQ
SSNR Run BLAST on NCBI transcript from alignment at scaffold_479:85847..86795 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068092 ID=TCONS_00068092|Name=TCONS_00068092|organism=Clytia hemisphaerica|type=transcript|length=949bp|location=Sequence derived from alignment at scaffold_479:85847..86795 (Clytia hemisphaerica)
gttcggtgaaatggtggtggaatggccgtcccatgttgtgtaagatagtc
ccaagttggagcagttgacaaTACTATTTTCATAATAAAAAGCCTATaag
gaaaaattacatacttcaTTACAGTAAAATAATTAGTGACAATTAAAAGG
ACAGCCAATGTAAAACCCCCAGTAGGGCAATATTGCCAATCAATTACTTT
CTTTGTGACAGCATCGCGCATGTGATGAAACTTTATGTCAATGTCTTTGG
TTCGAGATTGGTGAGTTGGGTAGCACCTTGATtttcttcaaacatttttg
ttgGATCAGTTTGTACGAAATCCATACCTTTGAATAAAGTTTGTTGCCAA
ATAGCCTCTTGTGTTGCTTGAGATAAGGCTATATATTCAGCTTCTGTTGT
CGAGAGTGCTTAATGATCGATTGGCGCTTGGATTTCCACGATACTGTTGA
ATTTCCGACTTTAATACGTAACCAGAGGTGTATTTACGTTTATAAATTTC
TCCAGCCCAATCAGCATCTGCAAAACTGTGAAGCAGAATATCTCCTGACT
CAGATCCTTTGTGGATCAAGCCATAATCAAGTGTTTCTTTCAAATAACGC
AGCACTCTCTTTACGCCAATCCAATGTTGTTTGGCAGGCTTTCACATATG
TTGGCTCAAAACTCCCACTGCTGCCGATATGTCTGGGCGGGTACCGATTA
TGCGTAGGTCAATCATCCAATCGCTGATTGGTAATCCTTTAACTTTACAA
TCTCCTCATCGACTTTTCAAACTTCATACTTGGTTCCAGAGCTGTGGCGA
CTGATTTGTATTCATTCATATCAAAACGATTAAGCACGATTCGCAAGATG
GCAGCAGTGCGATCAGACATATGCTTGCTGTTGGATTTTATTCCGTTATT
TCTTGTTTTGGTTTGCAATTCCTGTACAAAGACTATCAGGAAGAATCAA Coding sequence (CDS) from alignment at scaffold_479:85847..86795 >TCONS_00068092 ID=TCONS_00068092|Name=TCONS_00068092|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at scaffold_479:85847..86795 (Clytia hemisphaerica)
ATGATCGATTGGCGCTTGGATTTCCACGATACTGTTGAATTTCCGACTTT
AATACGTAACCAGAGGTGTATTTACGTTTATAAATTTCTCCAGCCCAATC
AGCATCTGCAAAACTGTGAAGCAGAATATCTCCTGACTCAGATCCTTTGT
GGATCAAGCCATAATCAAGTGTTTCTTTCAAATAACGCAGCACTCTCTTT
ACGCCAATCCAATGTTGTTTGGCAGGCTTTCACATATGTTGGCTCAAAAC
TCCCACTGCTGCCGATATGTCTGGGCGGGTACCGATTATGCGTAGGTCAA
TCATCCAATCGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068092-exon-scaffold_479-1491911889:85847..86795 | TCONS_00068092-exon-scaffold_479-1491911889:85847..86795 | Clytia hemisphaerica | exon |
| TCONS_00068092-exon-scaffold_479-1510915933:85847..86795 | TCONS_00068092-exon-scaffold_479-1510915933:85847..86795 | Clytia hemisphaerica | exon |
| TCONS_00068092-exon-scaffold_479-1575043694:85847..86795 | TCONS_00068092-exon-scaffold_479-1575043694:85847..86795 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_479 | supercontig | scaffold_479:85847..86795 . |
Blast
The following BLAST results are available for this feature:
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